Wall clock time and date at job start Tue Mar 31 2020 06:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47063 * 2 1 4 4 N 1.46505 * 109.46902 * 185.63502 * 3 2 1 5 5 C 1.36933 * 120.00313 * 82.70529 * 4 3 2 6 6 H 1.08000 * 119.99782 * 171.29852 * 5 4 3 7 7 C 1.38810 * 119.99875 * 351.29073 * 5 4 3 8 8 N 1.31620 * 120.00095 * 1.49841 * 7 5 4 9 9 Si 1.86798 * 120.00004 * 181.49910 * 7 5 4 10 10 H 1.48505 * 109.47165 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47390 * 119.99815 * 9 7 5 12 12 H 1.48501 * 109.47578 * 240.00162 * 9 7 5 13 13 C 1.46499 * 119.99357 * 262.70418 * 4 3 2 14 14 C 1.50701 * 109.47201 * 275.49447 * 13 4 3 15 15 C 1.38390 * 120.13499 * 100.78497 * 14 13 4 16 16 C 1.38217 * 120.21671 * 180.02562 * 15 14 13 17 17 C 1.38382 * 120.21320 * 359.95602 * 16 15 14 18 18 C 1.38416 * 119.71230 * 359.97438 * 17 16 15 19 19 C 1.38419 * 120.14739 * 280.76497 * 14 13 4 20 20 O 1.36461 * 120.30958 * 0.09219 * 19 14 13 21 21 C 1.42910 * 115.92159 * 248.26677 * 20 19 14 22 22 C 1.52072 * 110.73687 * 275.59753 * 21 20 19 23 23 C 1.52060 * 112.37270 * 64.85931 * 22 21 20 24 24 O 1.36471 * 120.32442 * 180.02562 * 18 17 16 25 25 H 1.08993 * 109.47052 * 184.96403 * 1 2 3 26 26 H 1.08997 * 109.46926 * 304.96595 * 1 2 3 27 27 H 1.09004 * 109.46916 * 64.96445 * 1 2 3 28 28 H 1.08997 * 109.46873 * 239.99405 * 2 1 3 29 29 H 1.08999 * 109.47059 * 119.99678 * 2 1 3 30 30 H 1.08997 * 109.47289 * 65.62912 * 3 2 1 31 31 H 1.09007 * 109.46946 * 305.62620 * 3 2 1 32 32 H 0.97000 * 119.99383 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.46780 * 155.49882 * 13 4 3 34 34 H 1.08998 * 109.47370 * 35.50111 * 13 4 3 35 35 H 1.07991 * 119.89353 * 0.02562 * 15 14 13 36 36 H 1.08002 * 119.89278 * 179.97438 * 16 15 14 37 37 H 1.08007 * 120.14388 * 180.02562 * 17 16 15 38 38 H 1.09000 * 109.21574 * 35.95183 * 21 20 19 39 39 H 1.08998 * 109.21680 * 155.32768 * 21 20 19 40 40 H 1.08996 * 108.93920 * 304.09581 * 22 21 20 41 41 H 1.08994 * 108.86627 * 185.58166 * 22 21 20 42 42 H 1.08994 * 109.21501 * 174.77780 * 23 22 21 43 43 H 1.09002 * 109.21643 * 55.40762 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4988 1.4447 -0.1356 5 6 4.0715 1.3337 -1.3745 6 1 5.1356 1.4757 -1.4921 7 6 3.2843 1.0386 -2.4791 8 7 1.9833 0.8946 -2.3405 9 14 4.0712 0.8459 -4.1622 10 1 5.5373 1.0545 -4.0500 11 1 3.8044 -0.5202 -4.6800 12 1 3.4979 1.8494 -5.0946 13 6 4.3448 1.5656 1.0543 14 6 4.5093 3.0213 1.4078 15 6 3.7595 3.5772 2.4295 16 6 3.9087 4.9122 2.7548 17 6 4.8095 5.7014 2.0616 18 6 5.5621 5.1481 1.0401 19 6 5.4114 3.8079 0.7124 20 8 6.1559 3.2726 -0.2982 21 6 7.5588 3.1616 -0.0494 22 6 8.2673 4.4686 -0.3691 23 6 7.8339 5.6014 0.5481 24 8 6.4545 5.9148 0.3486 25 1 -0.3633 -1.0237 0.0889 26 1 -0.3633 0.5889 0.8421 27 1 -0.3633 0.4349 -0.9312 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.7614 1.9264 0.9361 31 1 1.5967 1.9846 -0.8354 32 1 1.4333 0.6887 -3.1125 33 1 5.3223 1.1284 0.8510 34 1 3.8777 1.0399 1.8871 35 1 3.0555 2.9660 2.9744 36 1 3.3205 5.3408 3.5529 37 1 4.9255 6.7445 2.3170 38 1 7.7185 2.9135 0.9998 39 1 7.9720 2.3685 -0.6725 40 1 8.0492 4.7463 -1.4003 41 1 9.3423 4.3215 -0.2649 42 1 8.4368 6.4845 0.3370 43 1 7.9872 5.3020 1.5850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092397997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:18 Heat of formation + Delta-G solvation = -14.655278 kcal Electronic energy + Delta-G solvation = -24711.885960 eV Core-core repulsion = 21338.094499 eV Total energy + Delta-G solvation = -3373.791461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.48858 -37.59435 -37.02004 -35.87968 -32.66059 -32.26470 -31.39479 -29.66334 -28.65754 -26.44889 -25.55518 -25.27048 -22.34066 -21.64966 -21.55061 -20.59065 -19.57191 -17.96582 -16.84184 -16.45703 -16.40513 -15.14253 -15.08324 -14.82967 -14.79826 -13.78187 -13.73016 -13.58240 -13.37367 -13.14820 -12.97284 -12.84576 -12.28279 -11.94175 -11.62646 -11.54514 -11.21809 -11.00807 -10.88769 -10.70264 -10.66889 -10.54330 -10.17561 -10.14288 -9.95905 -9.73278 -9.55804 -9.39254 -9.27984 -8.23381 -8.13909 -8.01595 -6.69694 -5.44585 -2.93547 1.54194 1.67778 3.47597 3.54686 3.56398 3.68870 3.86854 4.25790 4.64542 4.76044 4.86424 5.18537 5.22212 5.31212 5.39022 5.43596 5.59643 5.61252 5.66626 5.73293 5.76954 5.90466 5.93383 6.08960 6.22587 6.30746 6.40089 6.42566 6.60259 6.64935 6.75415 6.79106 6.88345 7.02168 7.03454 7.11382 7.42832 7.51239 7.53286 7.92417 8.06246 8.09364 8.30469 8.60896 9.45248 10.01966 10.43517 11.46614 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014924 B = 0.006724 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.671955 B = 4162.880369 C = 5510.339026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.112 4.112 3 C 0.173 3.827 4 N -0.589 5.589 5 C -0.216 4.216 6 H 0.082 0.918 7 C -0.017 4.017 8 N -0.911 5.911 9 Si 0.907 3.093 10 H -0.282 1.282 11 H -0.294 1.294 12 H -0.294 1.294 13 C 0.191 3.809 14 C -0.084 4.084 15 C -0.111 4.111 16 C -0.118 4.118 17 C -0.136 4.136 18 C 0.056 3.944 19 C 0.086 3.914 20 O -0.290 6.290 21 C 0.057 3.943 22 C -0.186 4.186 23 C 0.063 3.937 24 O -0.322 6.322 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.003 0.997 30 H -0.006 1.006 31 H 0.102 0.898 32 H 0.245 0.755 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.050 0.950 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.568 6.041 9.946 14.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.151 4.151 3 C 0.048 3.952 4 N -0.307 5.307 5 C -0.345 4.345 6 H 0.100 0.900 7 C -0.211 4.211 8 N -0.560 5.560 9 Si 0.739 3.261 10 H -0.207 1.207 11 H -0.222 1.222 12 H -0.222 1.222 13 C 0.063 3.937 14 C -0.088 4.088 15 C -0.130 4.130 16 C -0.137 4.137 17 C -0.155 4.155 18 C 0.012 3.988 19 C 0.041 3.959 20 O -0.206 6.206 21 C -0.018 4.018 22 C -0.224 4.224 23 C -0.012 4.012 24 O -0.239 6.239 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.022 0.978 30 H 0.012 0.988 31 H 0.119 0.881 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.372 6.046 9.453 14.000 hybrid contribution 0.521 0.014 -0.766 0.926 sum 8.893 6.061 8.688 13.831 Atomic orbital electron populations 1.21568 0.98693 0.98376 1.00336 1.22155 0.92850 1.00220 0.99880 1.21104 0.81999 0.94955 0.97102 1.44243 1.01618 1.83402 1.01464 1.19573 0.93240 1.37705 0.84019 0.89984 1.24794 0.95876 1.02510 0.97903 1.70234 1.02978 1.55523 1.27304 0.86093 0.78316 0.76917 0.84758 1.20724 1.22181 1.22167 1.19631 0.95862 0.87857 0.90379 1.21315 0.94608 1.00899 0.92006 1.20997 0.99285 0.94990 0.97745 1.20939 0.98643 0.93944 1.00144 1.20860 0.99352 1.00204 0.95101 1.19190 0.95172 0.89850 0.94558 1.18919 0.96003 0.90087 0.90908 1.86667 1.16884 1.81106 1.35926 1.22541 0.81612 0.96772 1.00896 1.22481 1.00844 0.96479 1.02619 1.22531 0.81626 0.98589 0.98452 1.86337 1.14708 1.56484 1.66349 0.95518 0.95490 0.92498 0.88626 0.97808 0.98786 0.88057 0.94400 0.92416 0.93710 0.85877 0.85993 0.85852 0.93143 0.88312 0.89946 0.89933 0.88593 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.91 37.16 0.37 -2.33 16 2 C -0.11 -2.62 5.33 -26.73 -0.14 -2.76 16 3 C 0.17 4.25 5.01 -4.04 -0.02 4.23 16 4 N -0.59 -14.62 2.53 -174.61 -0.44 -15.07 16 5 C -0.22 -5.86 9.30 -15.06 -0.14 -6.00 16 6 H 0.08 2.23 6.58 -52.49 -0.35 1.89 16 7 C -0.02 -0.47 5.19 -17.43 -0.09 -0.56 16 8 N -0.91 -25.35 7.27 55.49 0.40 -24.94 16 9 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 13 C 0.19 3.97 5.44 -5.19 -0.03 3.94 16 14 C -0.08 -1.62 5.47 -104.50 -0.57 -2.19 16 15 C -0.11 -1.85 9.67 -39.53 -0.38 -2.23 16 16 C -0.12 -1.74 10.04 -39.54 -0.40 -2.14 16 17 C -0.14 -2.12 10.01 -39.46 -0.39 -2.51 16 18 C 0.06 1.00 5.73 -39.31 -0.23 0.78 16 19 C 0.09 1.69 5.70 -39.31 -0.22 1.46 16 20 O -0.29 -5.87 7.73 -36.66 -0.28 -6.15 16 21 C 0.06 0.85 6.51 36.68 0.24 1.09 16 22 C -0.19 -2.31 5.92 -27.68 -0.16 -2.48 16 23 C 0.06 0.79 6.51 36.68 0.24 1.03 16 24 O -0.32 -5.50 10.16 -36.69 -0.37 -5.88 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.10 2.56 6.02 -51.93 -0.31 2.25 16 29 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 30 H -0.01 -0.14 8.02 -51.93 -0.42 -0.56 16 31 H 0.10 2.83 5.91 -51.93 -0.31 2.53 16 32 H 0.24 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.06 1.19 7.75 -51.93 -0.40 0.79 16 34 H 0.04 0.86 7.97 -51.93 -0.41 0.44 16 35 H 0.12 1.84 8.03 -52.49 -0.42 1.42 16 36 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 37 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.05 0.67 7.93 -51.93 -0.41 0.26 16 39 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.60 7.93 -51.93 -0.41 0.19 16 LS Contribution 340.01 15.07 5.12 5.12 Total: -1.00 -30.37 340.01 -9.33 -39.70 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.81 Total: 0.38 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -1.93 Total: -10.66 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: -0.04 Total: -40.01 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.66 Total: -12.03 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.37 -9.33 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092397997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.045 kcal (2) G-P(sol) polarization free energy of solvation -30.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds