Wall clock time and date at job start Tue Mar 31 2020 06:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47063 * 2 1 4 4 N 1.46505 * 109.46902 * 185.63502 * 3 2 1 5 5 C 1.36933 * 120.00313 * 82.70529 * 4 3 2 6 6 H 1.08000 * 119.99782 * 171.29852 * 5 4 3 7 7 C 1.38810 * 119.99875 * 351.29073 * 5 4 3 8 8 N 1.31620 * 120.00095 * 1.49841 * 7 5 4 9 9 Si 1.86798 * 120.00004 * 181.49910 * 7 5 4 10 10 H 1.48505 * 109.47165 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47390 * 119.99815 * 9 7 5 12 12 H 1.48501 * 109.47578 * 240.00162 * 9 7 5 13 13 C 1.46499 * 119.99357 * 262.70418 * 4 3 2 14 14 C 1.50701 * 109.47201 * 275.49447 * 13 4 3 15 15 C 1.38390 * 120.13499 * 100.78497 * 14 13 4 16 16 C 1.38217 * 120.21671 * 180.02562 * 15 14 13 17 17 C 1.38382 * 120.21320 * 359.95602 * 16 15 14 18 18 C 1.38416 * 119.71230 * 359.97438 * 17 16 15 19 19 C 1.38419 * 120.14739 * 280.76497 * 14 13 4 20 20 O 1.36461 * 120.30958 * 0.09219 * 19 14 13 21 21 C 1.42910 * 115.92159 * 248.26677 * 20 19 14 22 22 C 1.52072 * 110.73687 * 275.59753 * 21 20 19 23 23 C 1.52060 * 112.37270 * 64.85931 * 22 21 20 24 24 O 1.36471 * 120.32442 * 180.02562 * 18 17 16 25 25 H 1.08993 * 109.47052 * 184.96403 * 1 2 3 26 26 H 1.08997 * 109.46926 * 304.96595 * 1 2 3 27 27 H 1.09004 * 109.46916 * 64.96445 * 1 2 3 28 28 H 1.08997 * 109.46873 * 239.99405 * 2 1 3 29 29 H 1.08999 * 109.47059 * 119.99678 * 2 1 3 30 30 H 1.08997 * 109.47289 * 65.62912 * 3 2 1 31 31 H 1.09007 * 109.46946 * 305.62620 * 3 2 1 32 32 H 0.97000 * 119.99383 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.46780 * 155.49882 * 13 4 3 34 34 H 1.08998 * 109.47370 * 35.50111 * 13 4 3 35 35 H 1.07991 * 119.89353 * 0.02562 * 15 14 13 36 36 H 1.08002 * 119.89278 * 179.97438 * 16 15 14 37 37 H 1.08007 * 120.14388 * 180.02562 * 17 16 15 38 38 H 1.09000 * 109.21574 * 35.95183 * 21 20 19 39 39 H 1.08998 * 109.21680 * 155.32768 * 21 20 19 40 40 H 1.08996 * 108.93920 * 304.09581 * 22 21 20 41 41 H 1.08994 * 108.86627 * 185.58166 * 22 21 20 42 42 H 1.08994 * 109.21501 * 174.77780 * 23 22 21 43 43 H 1.09002 * 109.21643 * 55.40762 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4988 1.4447 -0.1356 5 6 4.0715 1.3337 -1.3745 6 1 5.1356 1.4757 -1.4921 7 6 3.2843 1.0386 -2.4791 8 7 1.9833 0.8946 -2.3405 9 14 4.0712 0.8459 -4.1622 10 1 5.5373 1.0545 -4.0500 11 1 3.8044 -0.5202 -4.6800 12 1 3.4979 1.8494 -5.0946 13 6 4.3448 1.5656 1.0543 14 6 4.5093 3.0213 1.4078 15 6 3.7595 3.5772 2.4295 16 6 3.9087 4.9122 2.7548 17 6 4.8095 5.7014 2.0616 18 6 5.5621 5.1481 1.0401 19 6 5.4114 3.8079 0.7124 20 8 6.1559 3.2726 -0.2982 21 6 7.5588 3.1616 -0.0494 22 6 8.2673 4.4686 -0.3691 23 6 7.8339 5.6014 0.5481 24 8 6.4545 5.9148 0.3486 25 1 -0.3633 -1.0237 0.0889 26 1 -0.3633 0.5889 0.8421 27 1 -0.3633 0.4349 -0.9312 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.7614 1.9264 0.9361 31 1 1.5967 1.9846 -0.8354 32 1 1.4333 0.6887 -3.1125 33 1 5.3223 1.1284 0.8510 34 1 3.8777 1.0399 1.8871 35 1 3.0555 2.9660 2.9744 36 1 3.3205 5.3408 3.5529 37 1 4.9255 6.7445 2.3170 38 1 7.7185 2.9135 0.9998 39 1 7.9720 2.3685 -0.6725 40 1 8.0492 4.7463 -1.4003 41 1 9.3423 4.3215 -0.2649 42 1 8.4368 6.4845 0.3370 43 1 7.9872 5.3020 1.5850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092397997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:18 Heat of formation + Delta-G solvation = -30.495154 kcal Electronic energy + Delta-G solvation = -24712.572829 eV Core-core repulsion = 21338.094499 eV Total energy + Delta-G solvation = -3374.478330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.74958 -38.94573 -38.31414 -37.62808 -33.92213 -33.75185 -33.31829 -31.27403 -29.92345 -27.70435 -27.28259 -26.95943 -23.94120 -22.93185 -22.85050 -22.04320 -21.36095 -19.24787 -18.58173 -17.90722 -17.70355 -16.91940 -16.28307 -16.23235 -15.93457 -15.55729 -15.25596 -14.97314 -14.93510 -14.69838 -14.51210 -14.05421 -13.82593 -13.27859 -13.10585 -13.04188 -12.77648 -12.69845 -12.61220 -12.40491 -12.07201 -12.01055 -11.87110 -11.67620 -11.63504 -11.45935 -11.25484 -11.22708 -10.74194 -10.16720 -9.54606 -9.30430 -8.64301 -7.51573 -5.00358 0.28310 0.38485 1.46167 1.48795 1.56692 2.49905 2.61742 2.66607 2.99086 3.47976 3.75219 3.82322 3.89823 4.01542 4.14306 4.22456 4.36386 4.39226 4.43263 4.53573 4.55034 4.63406 4.69614 4.74594 4.80738 4.83106 4.95968 5.01493 5.05483 5.06710 5.13819 5.30373 5.38543 5.50333 5.64438 5.67343 5.68944 5.81279 5.83205 6.07423 6.32317 6.34707 6.58286 6.77983 7.39076 8.06043 8.42310 9.36790 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014924 B = 0.006724 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.671955 B = 4162.880369 C = 5510.339026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.181 3.819 4 N -0.604 5.604 5 C -0.214 4.214 6 H 0.074 0.926 7 C -0.066 4.066 8 N -0.921 5.921 9 Si 0.956 3.044 10 H -0.278 1.278 11 H -0.295 1.295 12 H -0.303 1.303 13 C 0.194 3.806 14 C -0.109 4.109 15 C -0.115 4.115 16 C -0.108 4.108 17 C -0.132 4.132 18 C 0.042 3.958 19 C 0.063 3.937 20 O -0.330 6.330 21 C 0.048 3.952 22 C -0.180 4.180 23 C 0.056 3.944 24 O -0.344 6.344 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.012 0.988 30 H 0.010 0.990 31 H 0.066 0.934 32 H 0.236 0.764 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.151 0.849 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.175 7.330 12.043 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 C 0.057 3.943 4 N -0.324 5.324 5 C -0.345 4.345 6 H 0.091 0.909 7 C -0.258 4.258 8 N -0.572 5.572 9 Si 0.788 3.212 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.231 1.231 13 C 0.068 3.932 14 C -0.112 4.112 15 C -0.134 4.134 16 C -0.125 4.125 17 C -0.150 4.150 18 C -0.002 4.002 19 C 0.018 3.982 20 O -0.246 6.246 21 C -0.027 4.027 22 C -0.218 4.218 23 C -0.018 4.018 24 O -0.262 6.262 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.030 0.970 30 H 0.028 0.972 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.158 0.842 36 H 0.180 0.820 37 H 0.169 0.831 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.015 7.346 11.586 16.415 hybrid contribution 0.453 -0.313 -1.314 1.425 sum 9.468 7.032 10.272 15.640 Atomic orbital electron populations 1.21446 0.96441 0.99813 1.00279 1.21962 0.94844 0.99074 0.98391 1.20874 0.81996 0.95266 0.96207 1.44351 1.02073 1.84125 1.01885 1.19634 0.92903 1.36675 0.85266 0.90867 1.25350 0.96564 1.03655 1.00227 1.70430 1.03306 1.56474 1.27033 0.85326 0.77733 0.76267 0.81920 1.20334 1.22232 1.23131 1.19643 0.94830 0.89461 0.89306 1.21171 0.96435 0.99584 0.94037 1.21252 0.98895 0.96243 0.96973 1.21347 0.97930 0.92931 1.00335 1.21258 0.98271 1.01553 0.93956 1.19420 0.96095 0.89379 0.95283 1.19212 0.96663 0.91175 0.91113 1.86563 1.19323 1.81659 1.37104 1.22801 0.79678 0.98495 1.01721 1.22447 1.02775 0.95133 1.01402 1.22850 0.79812 0.99919 0.99211 1.86288 1.16541 1.56505 1.66824 0.93679 0.93403 0.94252 0.92215 0.96958 0.97173 0.91642 0.95316 0.93344 0.92216 0.84239 0.81992 0.83143 0.92058 0.88038 0.91834 0.86061 0.85610 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.91 71.98 0.71 -4.15 16 2 C -0.10 -4.83 5.33 30.60 0.16 -4.67 16 3 C 0.18 8.98 5.01 86.38 0.43 9.41 16 4 N -0.60 -30.53 2.53 -706.33 -1.79 -32.32 16 5 C -0.21 -11.97 9.30 84.03 0.78 -11.19 16 6 H 0.07 4.14 6.58 -2.91 -0.02 4.12 16 7 C -0.07 -3.75 5.19 84.86 0.44 -3.31 16 8 N -0.92 -52.94 7.27 21.65 0.16 -52.79 16 9 Si 0.96 47.71 29.55 68.60 2.03 49.73 16 10 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 12 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 13 C 0.19 8.11 5.44 85.63 0.47 8.58 16 14 C -0.11 -4.14 5.47 -19.78 -0.11 -4.24 16 15 C -0.11 -3.56 9.67 22.30 0.22 -3.35 16 16 C -0.11 -2.79 10.04 22.30 0.22 -2.57 16 17 C -0.13 -3.72 10.01 22.35 0.22 -3.49 16 18 C 0.04 1.45 5.73 22.44 0.13 1.58 16 19 C 0.06 2.47 5.70 22.45 0.13 2.60 16 20 O -0.33 -13.63 7.73 -84.11 -0.65 -14.28 16 21 C 0.05 1.41 6.51 71.68 0.47 1.87 16 22 C -0.18 -4.21 5.92 29.98 0.18 -4.03 16 23 C 0.06 1.29 6.51 71.67 0.47 1.76 16 24 O -0.34 -11.32 10.16 -84.22 -0.86 -12.18 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 27 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.06 3.26 6.02 -2.39 -0.01 3.25 16 29 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.01 0.46 8.02 -2.39 -0.02 0.44 16 31 H 0.07 3.75 5.91 -2.38 -0.01 3.74 16 32 H 0.24 13.49 8.31 -92.71 -0.77 12.72 16 33 H 0.05 2.05 7.75 -2.39 -0.02 2.03 16 34 H 0.06 2.25 7.97 -2.39 -0.02 2.23 16 35 H 0.14 3.77 8.03 -2.92 -0.02 3.75 16 36 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 38 H 0.06 1.62 7.93 -2.39 -0.02 1.60 16 39 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.06 1.33 7.93 -2.39 -0.02 1.31 16 Total: -1.00 -68.02 340.01 4.79 -63.23 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.98 Total: 13.79 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 4.92 Total: -15.20 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -1.63 Total: -85.10 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -1.51 Total: -26.45 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.73 kcal Total: -68.02 4.79 -63.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092397997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.737 kcal (2) G-P(sol) polarization free energy of solvation -68.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds