Wall clock time and date at job start Tue Mar 31 2020 06:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47306 * 2 1 4 4 N 1.46502 * 109.47433 * 180.02562 * 3 2 1 5 5 C 1.37098 * 119.99772 * 270.00461 * 4 3 2 6 6 H 1.07999 * 120.00136 * 9.59548 * 5 4 3 7 7 C 1.38946 * 119.99479 * 189.60130 * 5 4 3 8 8 N 1.31414 * 120.00558 * 10.70613 * 7 5 4 9 9 Si 1.86797 * 119.99602 * 190.70282 * 7 5 4 10 10 H 1.48497 * 109.47315 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47356 * 120.00274 * 9 7 5 12 12 H 1.48507 * 109.47360 * 240.00256 * 9 7 5 13 13 C 1.34778 * 120.00119 * 89.99784 * 4 3 2 14 14 O 1.21288 * 120.00198 * 242.18801 * 13 4 3 15 15 C 1.50696 * 119.99721 * 62.18422 * 13 4 3 16 16 H 1.08999 * 109.47369 * 302.51262 * 15 13 4 17 17 C 1.53002 * 109.47343 * 62.51989 * 15 13 4 18 18 O 1.42902 * 109.46822 * 182.51915 * 15 13 4 19 19 C 1.35901 * 116.99987 * 151.74293 * 18 15 13 20 20 C 1.38748 * 120.05912 * 88.16642 * 19 18 15 21 21 C 1.38127 * 119.94638 * 180.02562 * 20 19 18 22 22 C 1.38285 * 120.05422 * 359.97438 * 21 20 19 23 23 C 1.38248 * 120.11301 * 0.04509 * 22 21 20 24 24 C 1.50693 * 119.97239 * 179.97438 * 23 22 21 25 25 C 1.38166 * 120.05100 * 359.67671 * 23 22 21 26 26 H 1.09002 * 109.46697 * 300.00168 * 1 2 3 27 27 H 1.09002 * 109.46912 * 59.99891 * 1 2 3 28 28 H 1.08998 * 109.47015 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46697 * 239.99832 * 2 1 3 30 30 H 1.08998 * 109.47565 * 120.00435 * 2 1 3 31 31 H 1.09001 * 109.46760 * 59.99817 * 3 2 1 32 32 H 1.09006 * 109.47050 * 300.00376 * 3 2 1 33 33 H 0.96997 * 119.99980 * 185.00035 * 8 7 5 34 34 H 1.09004 * 109.46833 * 59.88329 * 17 15 13 35 35 H 1.09001 * 109.46645 * 299.88584 * 17 15 13 36 36 H 1.08992 * 109.47126 * 179.88544 * 17 15 13 37 37 H 1.08008 * 120.02837 * 0.02562 * 20 19 18 38 38 H 1.08002 * 119.97229 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.94414 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.47188 * 89.99806 * 24 23 22 41 41 H 1.09001 * 109.47450 * 209.99583 * 24 23 22 42 42 H 1.09003 * 109.47377 * 329.99825 * 24 23 22 43 43 H 1.08004 * 120.02475 * 180.29699 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1911 1.4422 1.1864 6 1 3.6628 1.2861 2.1154 7 6 5.5659 1.6430 1.1943 8 7 6.1783 2.0399 0.1014 9 14 6.5438 1.3488 2.7584 10 1 5.6263 0.9105 3.8407 11 1 7.5618 0.2954 2.5150 12 1 7.2206 2.6071 3.1632 13 6 4.1785 1.4426 -1.1681 14 8 4.9061 0.5137 -1.4487 15 6 4.0274 2.5971 -2.1249 16 1 2.9764 2.7153 -2.3886 17 6 4.5342 3.8792 -1.4613 18 8 4.7888 2.3392 -3.3064 19 6 4.3484 2.9064 -4.4602 20 6 4.7651 4.1826 -4.8104 21 6 4.3157 4.7571 -5.9834 22 6 3.4515 4.0612 -6.8087 23 6 3.0345 2.7895 -6.4618 24 6 2.0922 2.0342 -7.3632 25 6 3.4857 2.2083 -5.2924 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8935 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 7.1456 2.1102 0.0858 34 1 5.5847 3.7601 -1.1959 35 1 3.9521 4.0769 -0.5612 36 1 4.4267 4.7137 -2.1541 37 1 5.4404 4.7265 -4.1664 38 1 4.6394 5.7507 -6.2562 39 1 3.1015 4.5119 -7.7256 40 1 2.6669 1.4519 -8.0835 41 1 1.4751 1.3644 -6.7643 42 1 1.4530 2.7399 -7.8939 43 1 3.1634 1.2130 -5.0242 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098022224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:30 Heat of formation + Delta-G solvation = -33.817370 kcal Electronic energy + Delta-G solvation = -24025.187898 eV Core-core repulsion = 20650.565506 eV Total energy + Delta-G solvation = -3374.622392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.73854 -38.50906 -36.82381 -34.84444 -32.86200 -32.45133 -31.25092 -30.67190 -29.18644 -26.85112 -25.82213 -24.66099 -23.25648 -21.89805 -21.20450 -20.93744 -19.15985 -17.18889 -16.73714 -15.99626 -15.71251 -15.44591 -14.92449 -14.54605 -14.13661 -13.97262 -13.71133 -13.55254 -13.12795 -13.05951 -12.98524 -12.71353 -12.25827 -11.83257 -11.79465 -11.55888 -11.39510 -11.24062 -11.20291 -11.10735 -11.03448 -10.88949 -10.73961 -10.46621 -10.35297 -10.18897 -9.98434 -9.32911 -9.03736 -8.63708 -8.29824 -8.12574 -7.24289 -6.04212 -3.52083 1.42531 1.50709 3.31915 3.39275 3.42399 3.64737 3.92770 4.26057 4.41973 4.90104 4.98847 5.07830 5.27368 5.30787 5.37606 5.49026 5.54423 5.58210 5.60256 5.69076 5.70450 5.79226 5.81100 5.95588 5.98880 6.06994 6.17064 6.23307 6.27493 6.34663 6.39697 6.54058 6.61888 6.65933 6.70753 6.73053 6.78600 6.95574 7.02448 7.41837 7.59444 8.10301 8.22648 9.09879 9.42826 9.65090 10.09762 11.06276 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.005153 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.193884 B = 5432.801495 C = 6642.593680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.136 3.864 4 N -0.554 5.554 5 C -0.286 4.286 6 H 0.087 0.913 7 C 0.015 3.985 8 N -0.876 5.876 9 Si 0.918 3.082 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.288 1.288 13 C 0.584 3.416 14 O -0.491 6.491 15 C 0.087 3.913 16 H 0.052 0.948 17 C -0.149 4.149 18 O -0.310 6.310 19 C 0.116 3.884 20 C -0.146 4.146 21 C -0.106 4.106 22 C -0.139 4.139 23 C -0.077 4.077 24 C -0.112 4.112 25 C -0.143 4.143 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.268 0.732 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.032 0.968 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.382 4.736 -9.773 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C 0.011 3.989 4 N -0.285 5.285 5 C -0.412 4.412 6 H 0.105 0.895 7 C -0.186 4.186 8 N -0.519 5.519 9 Si 0.747 3.253 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.214 1.214 13 C 0.371 3.629 14 O -0.361 6.361 15 C 0.027 3.973 16 H 0.070 0.930 17 C -0.206 4.206 18 O -0.227 6.227 19 C 0.072 3.928 20 C -0.164 4.164 21 C -0.124 4.124 22 C -0.157 4.157 23 C -0.078 4.078 24 C -0.169 4.169 25 C -0.161 4.161 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.611 4.198 -9.934 13.800 hybrid contribution 0.490 0.103 0.811 0.953 sum -8.120 4.301 -9.123 12.949 Atomic orbital electron populations 1.21714 0.96580 1.00920 1.01196 1.22043 0.94247 0.99428 1.02524 1.21059 0.82731 0.94806 1.00289 1.42662 1.02179 1.79431 1.04221 1.19319 0.90882 1.46593 0.84423 0.89542 1.24921 0.97218 0.98445 0.98050 1.69292 1.09465 1.45695 1.27408 0.86001 0.79972 0.77619 0.81751 1.20088 1.21234 1.21419 1.18765 0.78800 0.84922 0.80450 1.90414 1.36479 1.35738 1.73513 1.22515 0.92787 0.98039 0.83961 0.93006 1.22144 1.06279 0.93137 0.99078 1.86208 1.51497 1.71543 1.13418 1.18921 0.93900 0.91315 0.88681 1.21576 1.01655 0.94982 0.98190 1.20982 0.97495 0.99656 0.94231 1.20946 0.99870 0.94846 1.00054 1.19753 0.98049 0.94768 0.95193 1.20775 0.97780 0.99778 0.98548 1.21381 0.98344 1.00849 0.95554 0.92967 0.93255 0.93315 0.92598 0.91570 0.92059 0.93703 0.92053 0.88272 0.91436 0.94861 0.85424 0.86005 0.86315 0.91231 0.91512 0.91661 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.14 -2.52 6.26 -26.73 -0.17 -2.69 16 3 C 0.14 2.63 5.56 -4.04 -0.02 2.61 16 4 N -0.55 -13.63 2.46 -114.81 -0.28 -13.92 16 5 C -0.29 -7.56 9.73 -14.93 -0.15 -7.70 16 6 H 0.09 2.18 7.85 -52.49 -0.41 1.77 16 7 C 0.02 0.41 5.21 -17.47 -0.09 0.32 16 8 N -0.88 -24.99 7.96 55.50 0.44 -24.55 16 9 Si 0.92 21.63 29.57 -169.99 -5.03 16.60 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 13 C 0.58 15.24 3.79 -10.99 -0.04 15.19 16 14 O -0.49 -14.92 15.95 -14.35 -0.23 -15.15 16 15 C 0.09 1.94 3.05 -27.88 -0.09 1.85 16 16 H 0.05 1.04 7.04 -51.93 -0.37 0.68 16 17 C -0.15 -3.18 8.94 37.16 0.33 -2.85 16 18 O -0.31 -7.08 9.24 -39.33 -0.36 -7.44 16 19 C 0.12 2.16 5.55 -39.22 -0.22 1.94 16 20 C -0.15 -2.34 9.32 -39.43 -0.37 -2.70 16 21 C -0.11 -1.38 10.04 -39.60 -0.40 -1.78 16 22 C -0.14 -1.71 9.70 -39.56 -0.38 -2.10 16 23 C -0.08 -1.03 5.88 -104.65 -0.62 -1.65 16 24 C -0.11 -1.12 10.01 36.00 0.36 -0.76 16 25 C -0.14 -2.33 9.64 -39.43 -0.38 -2.71 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 32 H 0.04 0.79 7.03 -51.93 -0.37 0.42 16 33 H 0.27 7.54 8.32 -40.82 -0.34 7.20 16 34 H 0.10 2.42 6.30 -51.93 -0.33 2.09 16 35 H 0.07 1.45 8.11 -51.93 -0.42 1.03 16 36 H 0.03 0.60 7.09 -51.93 -0.37 0.23 16 37 H 0.13 2.01 7.65 -52.48 -0.40 1.61 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 42 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 43 H 0.13 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -32.16 355.72 -8.81 -40.97 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.86 Total: 2.71 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -1.85 Total: -4.60 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.16 Total: -38.46 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.59 Total: -22.59 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.16 -8.81 -40.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098022224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.156 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds