Wall clock time and date at job start Tue Mar 31 2020 06:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47306 * 2 1 4 4 N 1.46502 * 109.47433 * 180.02562 * 3 2 1 5 5 C 1.37098 * 119.99772 * 270.00461 * 4 3 2 6 6 H 1.07999 * 120.00136 * 9.59548 * 5 4 3 7 7 C 1.38946 * 119.99479 * 189.60130 * 5 4 3 8 8 N 1.31414 * 120.00558 * 10.70613 * 7 5 4 9 9 Si 1.86797 * 119.99602 * 190.70282 * 7 5 4 10 10 H 1.48497 * 109.47315 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47356 * 120.00274 * 9 7 5 12 12 H 1.48507 * 109.47360 * 240.00256 * 9 7 5 13 13 C 1.34778 * 120.00119 * 89.99784 * 4 3 2 14 14 O 1.21288 * 120.00198 * 242.18801 * 13 4 3 15 15 C 1.50696 * 119.99721 * 62.18422 * 13 4 3 16 16 H 1.08999 * 109.47369 * 302.51262 * 15 13 4 17 17 C 1.53002 * 109.47343 * 62.51989 * 15 13 4 18 18 O 1.42902 * 109.46822 * 182.51915 * 15 13 4 19 19 C 1.35901 * 116.99987 * 151.74293 * 18 15 13 20 20 C 1.38748 * 120.05912 * 88.16642 * 19 18 15 21 21 C 1.38127 * 119.94638 * 180.02562 * 20 19 18 22 22 C 1.38285 * 120.05422 * 359.97438 * 21 20 19 23 23 C 1.38248 * 120.11301 * 0.04509 * 22 21 20 24 24 C 1.50693 * 119.97239 * 179.97438 * 23 22 21 25 25 C 1.38166 * 120.05100 * 359.67671 * 23 22 21 26 26 H 1.09002 * 109.46697 * 300.00168 * 1 2 3 27 27 H 1.09002 * 109.46912 * 59.99891 * 1 2 3 28 28 H 1.08998 * 109.47015 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46697 * 239.99832 * 2 1 3 30 30 H 1.08998 * 109.47565 * 120.00435 * 2 1 3 31 31 H 1.09001 * 109.46760 * 59.99817 * 3 2 1 32 32 H 1.09006 * 109.47050 * 300.00376 * 3 2 1 33 33 H 0.96997 * 119.99980 * 185.00035 * 8 7 5 34 34 H 1.09004 * 109.46833 * 59.88329 * 17 15 13 35 35 H 1.09001 * 109.46645 * 299.88584 * 17 15 13 36 36 H 1.08992 * 109.47126 * 179.88544 * 17 15 13 37 37 H 1.08008 * 120.02837 * 0.02562 * 20 19 18 38 38 H 1.08002 * 119.97229 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.94414 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.47188 * 89.99806 * 24 23 22 41 41 H 1.09001 * 109.47450 * 209.99583 * 24 23 22 42 42 H 1.09003 * 109.47377 * 329.99825 * 24 23 22 43 43 H 1.08004 * 120.02475 * 180.29699 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1911 1.4422 1.1864 6 1 3.6628 1.2861 2.1154 7 6 5.5659 1.6430 1.1943 8 7 6.1783 2.0399 0.1014 9 14 6.5438 1.3488 2.7584 10 1 5.6263 0.9105 3.8407 11 1 7.5618 0.2954 2.5150 12 1 7.2206 2.6071 3.1632 13 6 4.1785 1.4426 -1.1681 14 8 4.9061 0.5137 -1.4487 15 6 4.0274 2.5971 -2.1249 16 1 2.9764 2.7153 -2.3886 17 6 4.5342 3.8792 -1.4613 18 8 4.7888 2.3392 -3.3064 19 6 4.3484 2.9064 -4.4602 20 6 4.7651 4.1826 -4.8104 21 6 4.3157 4.7571 -5.9834 22 6 3.4515 4.0612 -6.8087 23 6 3.0345 2.7895 -6.4618 24 6 2.0922 2.0342 -7.3632 25 6 3.4857 2.2083 -5.2924 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8935 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 7.1456 2.1102 0.0858 34 1 5.5847 3.7601 -1.1959 35 1 3.9521 4.0769 -0.5612 36 1 4.4267 4.7137 -2.1541 37 1 5.4404 4.7265 -4.1664 38 1 4.6394 5.7507 -6.2562 39 1 3.1015 4.5119 -7.7256 40 1 2.6669 1.4519 -8.0835 41 1 1.4751 1.3644 -6.7643 42 1 1.4530 2.7399 -7.8939 43 1 3.1634 1.2130 -5.0242 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098022224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:30 Heat of formation + Delta-G solvation = -50.843168 kcal Electronic energy + Delta-G solvation = -24025.926192 eV Core-core repulsion = 20650.565506 eV Total energy + Delta-G solvation = -3375.360686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.19678 -40.18514 -38.30565 -36.68120 -34.65750 -33.50615 -32.98935 -32.31867 -30.52656 -27.82574 -27.52379 -26.44974 -24.90672 -23.17257 -22.53156 -22.29348 -20.97716 -18.96410 -18.27982 -17.46754 -17.19570 -16.82773 -16.80244 -16.21253 -15.81720 -15.37986 -15.18349 -14.80092 -14.58774 -14.35895 -14.16231 -14.04771 -13.50227 -13.36850 -13.13085 -13.08828 -12.94385 -12.80933 -12.77475 -12.61442 -12.46056 -12.39623 -12.30708 -12.17070 -11.99465 -11.94510 -11.55097 -11.02661 -10.87843 -10.14867 -9.76480 -9.47135 -9.21517 -8.11331 -5.60356 0.24089 0.39044 1.40860 1.46440 1.55439 1.93111 2.35200 2.47900 2.90792 3.26970 3.38550 3.92765 3.95599 3.99721 4.11715 4.19021 4.21896 4.27920 4.41728 4.43778 4.46343 4.56253 4.63134 4.71376 4.81299 4.83106 4.86177 4.91967 4.94753 5.04489 5.09380 5.21647 5.27702 5.31627 5.46331 5.47011 5.52830 5.57399 5.61767 5.64931 5.92554 6.10245 6.70051 7.03948 7.44714 7.70567 8.09227 8.97300 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.005153 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.193884 B = 5432.801495 C = 6642.593680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.137 4.137 3 C 0.129 3.871 4 N -0.567 5.567 5 C -0.292 4.292 6 H 0.097 0.903 7 C -0.040 4.040 8 N -0.900 5.900 9 Si 0.980 3.020 10 H -0.258 1.258 11 H -0.302 1.302 12 H -0.282 1.282 13 C 0.578 3.422 14 O -0.552 6.552 15 C 0.096 3.904 16 H 0.073 0.927 17 C -0.133 4.133 18 O -0.343 6.343 19 C 0.075 3.925 20 C -0.159 4.159 21 C -0.097 4.097 22 C -0.127 4.127 23 C -0.074 4.074 24 C -0.111 4.111 25 C -0.161 4.161 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.031 0.969 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.258 0.742 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.122 0.878 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.796 6.421 -11.190 17.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 C 0.006 3.994 4 N -0.298 5.298 5 C -0.420 4.420 6 H 0.115 0.885 7 C -0.238 4.238 8 N -0.544 5.544 9 Si 0.807 3.193 10 H -0.182 1.182 11 H -0.229 1.229 12 H -0.208 1.208 13 C 0.368 3.632 14 O -0.427 6.427 15 C 0.036 3.964 16 H 0.091 0.909 17 C -0.190 4.190 18 O -0.260 6.260 19 C 0.031 3.969 20 C -0.178 4.178 21 C -0.115 4.115 22 C -0.145 4.145 23 C -0.074 4.074 24 C -0.168 4.168 25 C -0.179 4.179 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.140 0.860 38 H 0.174 0.826 39 H 0.178 0.822 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.086 5.906 -11.338 16.922 hybrid contribution 1.172 -0.419 1.125 1.678 sum -9.914 5.487 -10.213 15.255 Atomic orbital electron populations 1.21637 0.92693 1.02332 1.02676 1.21950 0.97540 0.97684 1.00457 1.21375 0.79807 0.96251 1.01984 1.42920 1.04324 1.79091 1.03436 1.19695 0.91328 1.45469 0.85463 0.88488 1.25776 0.98442 0.98806 1.00789 1.69457 1.08734 1.46938 1.29307 0.85038 0.78328 0.76992 0.78985 1.18182 1.22946 1.20826 1.19519 0.77555 0.84974 0.81133 1.90368 1.39218 1.37948 1.75196 1.22261 0.93972 0.96245 0.83927 0.90937 1.21944 1.03793 0.93824 0.99449 1.86171 1.52473 1.72717 1.14674 1.19267 0.96601 0.93064 0.87936 1.21623 1.02165 0.94232 0.99762 1.21379 0.96505 1.00910 0.92667 1.21451 0.98235 0.93996 1.00830 1.20159 0.97680 0.95422 0.94175 1.20857 0.97498 1.00222 0.98191 1.21423 0.98995 1.00562 0.96955 0.91380 0.91838 0.92008 0.95033 0.93346 0.90340 0.91831 0.93161 0.91617 0.91922 0.91837 0.86041 0.82553 0.82224 0.90163 0.91585 0.89001 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.91 71.98 0.71 -2.61 16 2 C -0.14 -4.81 6.26 30.60 0.19 -4.62 16 3 C 0.13 4.94 5.56 86.38 0.48 5.42 16 4 N -0.57 -28.56 2.46 -635.54 -1.57 -30.13 16 5 C -0.29 -15.75 9.73 84.04 0.82 -14.93 16 6 H 0.10 4.88 7.85 -2.91 -0.02 4.86 16 7 C -0.04 -2.25 5.21 84.93 0.44 -1.80 16 8 N -0.90 -53.84 7.96 21.66 0.17 -53.67 16 9 Si 0.98 45.54 29.57 68.60 2.03 47.57 16 10 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.58 31.53 3.79 87.66 0.33 31.87 16 14 O -0.55 -35.66 15.95 15.97 0.25 -35.41 16 15 C 0.10 4.42 3.05 29.85 0.09 4.51 16 16 H 0.07 2.96 7.04 -2.39 -0.02 2.94 16 17 C -0.13 -5.81 8.94 71.98 0.64 -5.16 16 18 O -0.34 -16.49 9.24 -73.41 -0.68 -17.16 16 19 C 0.07 2.84 5.55 22.51 0.12 2.96 16 20 C -0.16 -5.03 9.32 22.37 0.21 -4.82 16 21 C -0.10 -2.23 10.04 22.25 0.22 -2.00 16 22 C -0.13 -2.62 9.70 22.28 0.22 -2.40 16 23 C -0.07 -1.80 5.88 -19.88 -0.12 -1.91 16 24 C -0.11 -1.86 10.01 71.23 0.71 -1.14 16 25 C -0.16 -5.27 9.64 22.37 0.22 -5.06 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 2.72 8.04 -2.39 -0.02 2.70 16 32 H 0.06 2.17 7.03 -2.38 -0.02 2.15 16 33 H 0.26 15.35 8.32 -92.71 -0.77 14.58 16 34 H 0.06 3.35 6.30 -2.38 -0.02 3.34 16 35 H 0.06 2.74 8.11 -2.39 -0.02 2.72 16 36 H 0.06 2.32 7.09 -2.39 -0.02 2.31 16 37 H 0.12 3.86 7.65 -2.91 -0.02 3.84 16 38 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 39 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 42 H 0.09 1.07 8.09 -2.39 -0.02 1.05 16 43 H 0.11 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -75.14 355.72 6.48 -68.65 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.98 Total: 21.85 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 5.30 Total: -1.71 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -1.39 Total: -83.80 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -0.42 Total: -52.57 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -75.14 6.48 -68.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098022224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.811 kcal (2) G-P(sol) polarization free energy of solvation -75.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds