Wall clock time and date at job start Tue Mar 31 2020 06:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47164 * 2 1 4 4 N 1.46492 * 109.46981 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99924 * 269.99500 * 4 3 2 6 6 H 1.07999 * 120.00182 * 342.75180 * 5 4 3 7 7 C 1.38958 * 119.99920 * 162.74216 * 5 4 3 8 8 N 1.31415 * 119.99848 * 343.52994 * 7 5 4 9 9 Si 1.86799 * 119.99949 * 163.52682 * 7 5 4 10 10 H 1.48499 * 109.47220 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.46900 * 120.00086 * 9 7 5 12 12 H 1.48498 * 109.47102 * 240.00286 * 9 7 5 13 13 C 1.34776 * 120.00096 * 90.00235 * 4 3 2 14 14 O 1.21291 * 120.00120 * 127.75526 * 13 4 3 15 15 C 1.50694 * 119.99778 * 307.75456 * 13 4 3 16 16 H 1.08995 * 109.47426 * 52.75599 * 15 13 4 17 17 C 1.53005 * 109.47343 * 292.75279 * 15 13 4 18 18 O 1.42901 * 109.47306 * 172.75575 * 15 13 4 19 19 C 1.35897 * 117.00158 * 210.61674 * 18 15 13 20 20 C 1.38745 * 120.06047 * 84.76641 * 19 18 15 21 21 C 1.38120 * 119.94862 * 180.02562 * 20 19 18 22 22 C 1.38294 * 120.05387 * 0.27001 * 21 20 19 23 23 C 1.38237 * 120.10916 * 359.45155 * 22 21 20 24 24 C 1.50700 * 119.97202 * 180.25245 * 23 22 21 25 25 C 1.38167 * 120.05555 * 0.55067 * 23 22 21 26 26 H 1.08993 * 109.47270 * 60.00095 * 1 2 3 27 27 H 1.08998 * 109.46868 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46770 * 300.00103 * 1 2 3 29 29 H 1.08994 * 109.46952 * 239.99970 * 2 1 3 30 30 H 1.09002 * 109.47148 * 120.00118 * 2 1 3 31 31 H 1.09007 * 109.47081 * 59.99830 * 3 2 1 32 32 H 1.08993 * 109.46949 * 300.00102 * 3 2 1 33 33 H 0.96998 * 119.99600 * 185.00212 * 8 7 5 34 34 H 1.09001 * 109.46985 * 293.45559 * 17 15 13 35 35 H 1.09002 * 109.47020 * 53.45103 * 17 15 13 36 36 H 1.08994 * 109.47203 * 173.45373 * 17 15 13 37 37 H 1.08000 * 120.02754 * 359.97438 * 20 19 18 38 38 H 1.07997 * 119.97585 * 180.02562 * 21 20 19 39 39 H 1.07995 * 119.94064 * 179.70304 * 22 21 20 40 40 H 1.08994 * 109.47268 * 270.29428 * 24 23 22 41 41 H 1.09000 * 109.46896 * 30.29713 * 24 23 22 42 42 H 1.09006 * 109.47118 * 150.29622 * 24 23 22 43 43 H 1.08007 * 120.02849 * 179.74879 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.4424 1.1864 6 1 3.6878 1.7197 2.1009 7 6 5.5336 1.0853 1.2129 8 7 6.0638 0.4465 0.1942 9 14 6.5848 1.5134 2.6965 10 1 5.7560 2.2270 3.7011 11 1 7.1251 0.2671 3.2965 12 1 7.7088 2.3860 2.2716 13 6 4.1784 1.4427 -1.1681 14 8 5.0385 2.2732 -1.3719 15 6 3.8626 0.4110 -2.2202 16 1 2.7922 0.4173 -2.4255 17 6 4.2774 -0.9734 -1.7178 18 8 4.5792 0.7174 -3.4180 19 6 3.9990 0.3579 -4.5931 20 6 3.0704 1.1952 -5.1945 21 6 2.4817 0.8273 -6.3886 22 6 2.8131 -0.3771 -6.9819 23 6 3.7422 -1.2105 -6.3877 24 6 4.1052 -2.5197 -7.0399 25 6 4.3338 -0.8470 -5.1932 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 6.9806 0.1333 0.2422 34 1 5.3625 -1.0155 -1.6232 35 1 3.8206 -1.1590 -0.7457 36 1 3.9447 -1.7317 -2.4264 37 1 2.8074 2.1335 -4.7289 38 1 1.7592 1.4789 -6.8573 39 1 2.3481 -0.6652 -7.9131 40 1 3.4369 -3.3022 -6.6807 41 1 4.0071 -2.4263 -8.1215 42 1 5.1342 -2.7775 -6.7893 43 1 5.0567 -1.5004 -4.7273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098022225.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:33 Heat of formation + Delta-G solvation = -38.804995 kcal Electronic energy + Delta-G solvation = -24195.779329 eV Core-core repulsion = 20820.940657 eV Total energy + Delta-G solvation = -3374.838671 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.77741 -38.55060 -36.82476 -34.94033 -32.80161 -32.50115 -31.11706 -30.79144 -29.32647 -26.82563 -25.84071 -24.71509 -23.15593 -22.24329 -21.24570 -20.69454 -19.14900 -17.30859 -16.73995 -16.02531 -15.71624 -15.54976 -14.91457 -14.64003 -14.07211 -13.91572 -13.72012 -13.59528 -13.19217 -13.09580 -12.95125 -12.57677 -12.21295 -12.16021 -11.77987 -11.59960 -11.41167 -11.35417 -11.31053 -11.09275 -10.95921 -10.85869 -10.65454 -10.49915 -10.40556 -10.15784 -9.97378 -9.41654 -9.01483 -8.65009 -8.30814 -8.10639 -7.27124 -6.11898 -3.56020 1.40325 1.49198 3.29268 3.39224 3.42313 3.63201 3.94134 4.25262 4.39214 4.89213 4.98930 5.05699 5.25833 5.29526 5.36089 5.47052 5.51971 5.54656 5.56845 5.66077 5.70538 5.74637 5.79633 5.93940 5.97418 6.04392 6.15185 6.20723 6.25394 6.35979 6.37412 6.51261 6.57293 6.64315 6.69819 6.71883 6.75782 6.90188 7.00039 7.32921 7.58967 8.06064 8.21480 9.05253 9.36393 9.64476 10.12475 11.00604 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.004999 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.703023 B = 5600.059570 C = 6343.823412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.150 4.150 3 C 0.128 3.872 4 N -0.526 5.526 5 C -0.304 4.304 6 H 0.085 0.915 7 C 0.030 3.970 8 N -0.865 5.865 9 Si 0.921 3.079 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.284 1.284 13 C 0.558 3.442 14 O -0.507 6.507 15 C 0.087 3.913 16 H 0.057 0.943 17 C -0.142 4.142 18 O -0.313 6.313 19 C 0.117 3.883 20 C -0.151 4.151 21 C -0.104 4.104 22 C -0.139 4.139 23 C -0.077 4.077 24 C -0.112 4.112 25 C -0.138 4.138 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.267 0.733 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 -5.704 -10.045 14.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.190 4.190 3 C 0.003 3.997 4 N -0.254 5.254 5 C -0.431 4.431 6 H 0.103 0.897 7 C -0.174 4.174 8 N -0.505 5.505 9 Si 0.749 3.251 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.210 1.210 13 C 0.345 3.655 14 O -0.379 6.379 15 C 0.028 3.972 16 H 0.074 0.926 17 C -0.200 4.200 18 O -0.229 6.229 19 C 0.072 3.928 20 C -0.170 4.170 21 C -0.122 4.122 22 C -0.157 4.157 23 C -0.077 4.077 24 C -0.169 4.169 25 C -0.157 4.157 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.577 -5.147 -10.203 14.289 hybrid contribution 0.360 -0.106 0.778 0.864 sum -8.217 -5.253 -9.425 13.563 Atomic orbital electron populations 1.21739 0.96804 1.00888 1.01186 1.22260 0.94346 0.99593 1.02761 1.21281 0.83136 0.94917 1.00375 1.42856 1.02305 1.75878 1.04385 1.19268 0.93232 1.45193 0.85379 0.89750 1.25011 0.97758 0.96679 0.97993 1.69498 1.14962 1.35164 1.30892 0.85976 0.80263 0.77984 0.80870 1.19922 1.21373 1.21009 1.18874 0.81724 0.83629 0.81269 1.90437 1.33355 1.36664 1.77449 1.22564 0.93788 0.97350 0.83513 0.92562 1.22046 1.05161 0.92494 1.00294 1.86192 1.45403 1.80484 1.10859 1.18913 0.93060 0.92253 0.88539 1.21534 0.97585 1.00722 0.97139 1.20960 0.99535 0.96534 0.95158 1.20948 0.99238 0.95025 1.00504 1.19768 0.96562 0.96664 0.94753 1.20777 1.01969 0.94072 1.00075 1.21374 1.01716 0.96077 0.96483 0.93324 0.93358 0.92998 0.92178 0.91192 0.91665 0.93546 0.92227 0.89543 0.90409 0.94891 0.85648 0.85979 0.86284 0.91221 0.91663 0.91475 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.15 -2.51 5.57 -26.73 -0.15 -2.66 16 3 C 0.13 2.47 5.17 -4.04 -0.02 2.45 16 4 N -0.53 -13.01 2.53 -114.82 -0.29 -13.30 16 5 C -0.30 -8.13 9.59 -14.93 -0.14 -8.27 16 6 H 0.08 2.15 7.87 -52.49 -0.41 1.74 16 7 C 0.03 0.82 4.93 -17.46 -0.09 0.73 16 8 N -0.87 -24.59 9.09 55.50 0.50 -24.08 16 9 Si 0.92 21.80 29.59 -169.99 -5.03 16.77 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.56 14.66 4.03 -10.99 -0.04 14.62 16 14 O -0.51 -15.60 15.91 -14.26 -0.23 -15.83 16 15 C 0.09 1.93 2.39 -27.88 -0.07 1.86 16 16 H 0.06 1.12 6.52 -51.93 -0.34 0.78 16 17 C -0.14 -3.00 8.18 37.16 0.30 -2.70 16 18 O -0.31 -7.09 9.25 -39.22 -0.36 -7.45 16 19 C 0.12 2.15 5.56 -39.22 -0.22 1.93 16 20 C -0.15 -2.43 9.99 -39.44 -0.39 -2.82 16 21 C -0.10 -1.35 10.04 -39.60 -0.40 -1.74 16 22 C -0.14 -1.69 9.70 -39.56 -0.38 -2.08 16 23 C -0.08 -1.01 5.88 -104.65 -0.62 -1.63 16 24 C -0.11 -1.10 10.01 36.01 0.36 -0.74 16 25 C -0.14 -2.20 9.64 -39.43 -0.38 -2.58 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 1.03 4.88 -51.93 -0.25 0.78 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.19 8.03 -51.93 -0.42 0.78 16 32 H 0.05 0.83 8.03 -51.93 -0.42 0.41 16 33 H 0.27 7.39 8.32 -40.82 -0.34 7.05 16 34 H 0.09 2.05 7.12 -51.93 -0.37 1.68 16 35 H 0.08 1.69 6.75 -51.93 -0.35 1.34 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -32.52 353.03 -8.71 -41.23 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.76 Total: 2.54 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -1.87 Total: -5.19 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.21 Total: -37.39 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.59 Total: -23.28 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.52 -8.71 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098022225.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.425 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds