Wall clock time and date at job start Tue Mar 31 2020 06:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47164 * 2 1 4 4 N 1.46492 * 109.46981 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99924 * 269.99500 * 4 3 2 6 6 H 1.07999 * 120.00182 * 342.75180 * 5 4 3 7 7 C 1.38958 * 119.99920 * 162.74216 * 5 4 3 8 8 N 1.31415 * 119.99848 * 343.52994 * 7 5 4 9 9 Si 1.86799 * 119.99949 * 163.52682 * 7 5 4 10 10 H 1.48499 * 109.47220 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.46900 * 120.00086 * 9 7 5 12 12 H 1.48498 * 109.47102 * 240.00286 * 9 7 5 13 13 C 1.34776 * 120.00096 * 90.00235 * 4 3 2 14 14 O 1.21291 * 120.00120 * 127.75526 * 13 4 3 15 15 C 1.50694 * 119.99778 * 307.75456 * 13 4 3 16 16 H 1.08995 * 109.47426 * 52.75599 * 15 13 4 17 17 C 1.53005 * 109.47343 * 292.75279 * 15 13 4 18 18 O 1.42901 * 109.47306 * 172.75575 * 15 13 4 19 19 C 1.35897 * 117.00158 * 210.61674 * 18 15 13 20 20 C 1.38745 * 120.06047 * 84.76641 * 19 18 15 21 21 C 1.38120 * 119.94862 * 180.02562 * 20 19 18 22 22 C 1.38294 * 120.05387 * 0.27001 * 21 20 19 23 23 C 1.38237 * 120.10916 * 359.45155 * 22 21 20 24 24 C 1.50700 * 119.97202 * 180.25245 * 23 22 21 25 25 C 1.38167 * 120.05555 * 0.55067 * 23 22 21 26 26 H 1.08993 * 109.47270 * 60.00095 * 1 2 3 27 27 H 1.08998 * 109.46868 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46770 * 300.00103 * 1 2 3 29 29 H 1.08994 * 109.46952 * 239.99970 * 2 1 3 30 30 H 1.09002 * 109.47148 * 120.00118 * 2 1 3 31 31 H 1.09007 * 109.47081 * 59.99830 * 3 2 1 32 32 H 1.08993 * 109.46949 * 300.00102 * 3 2 1 33 33 H 0.96998 * 119.99600 * 185.00212 * 8 7 5 34 34 H 1.09001 * 109.46985 * 293.45559 * 17 15 13 35 35 H 1.09002 * 109.47020 * 53.45103 * 17 15 13 36 36 H 1.08994 * 109.47203 * 173.45373 * 17 15 13 37 37 H 1.08000 * 120.02754 * 359.97438 * 20 19 18 38 38 H 1.07997 * 119.97585 * 180.02562 * 21 20 19 39 39 H 1.07995 * 119.94064 * 179.70304 * 22 21 20 40 40 H 1.08994 * 109.47268 * 270.29428 * 24 23 22 41 41 H 1.09000 * 109.46896 * 30.29713 * 24 23 22 42 42 H 1.09006 * 109.47118 * 150.29622 * 24 23 22 43 43 H 1.08007 * 120.02849 * 179.74879 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.4424 1.1864 6 1 3.6878 1.7197 2.1009 7 6 5.5336 1.0853 1.2129 8 7 6.0638 0.4465 0.1942 9 14 6.5848 1.5134 2.6965 10 1 5.7560 2.2270 3.7011 11 1 7.1251 0.2671 3.2965 12 1 7.7088 2.3860 2.2716 13 6 4.1784 1.4427 -1.1681 14 8 5.0385 2.2732 -1.3719 15 6 3.8626 0.4110 -2.2202 16 1 2.7922 0.4173 -2.4255 17 6 4.2774 -0.9734 -1.7178 18 8 4.5792 0.7174 -3.4180 19 6 3.9990 0.3579 -4.5931 20 6 3.0704 1.1952 -5.1945 21 6 2.4817 0.8273 -6.3886 22 6 2.8131 -0.3771 -6.9819 23 6 3.7422 -1.2105 -6.3877 24 6 4.1052 -2.5197 -7.0399 25 6 4.3338 -0.8470 -5.1932 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 6.9806 0.1333 0.2422 34 1 5.3625 -1.0155 -1.6232 35 1 3.8206 -1.1590 -0.7457 36 1 3.9447 -1.7317 -2.4264 37 1 2.8074 2.1335 -4.7289 38 1 1.7592 1.4789 -6.8573 39 1 2.3481 -0.6652 -7.9131 40 1 3.4369 -3.3022 -6.6807 41 1 4.0071 -2.4263 -8.1215 42 1 5.1342 -2.7775 -6.7893 43 1 5.0567 -1.5004 -4.7273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098022225.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:33 Heat of formation + Delta-G solvation = -56.394491 kcal Electronic energy + Delta-G solvation = -24196.542066 eV Core-core repulsion = 20820.940657 eV Total energy + Delta-G solvation = -3375.601409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.23784 -40.20129 -38.30290 -36.77637 -34.61115 -33.56999 -32.78608 -32.45854 -30.63058 -27.77465 -27.55376 -26.49355 -24.85673 -23.42319 -22.58683 -21.99701 -20.96429 -19.02616 -18.35500 -17.56925 -17.12713 -16.93148 -16.77826 -16.22347 -15.78613 -15.32369 -15.19433 -14.74153 -14.64927 -14.35488 -14.07558 -13.97735 -13.74121 -13.42005 -13.21244 -13.07900 -12.91346 -12.81514 -12.79720 -12.64054 -12.51040 -12.40158 -12.23072 -12.08856 -12.03752 -11.91841 -11.43722 -11.04657 -10.92199 -10.13620 -9.75458 -9.47790 -9.25753 -8.19987 -5.65722 0.23392 0.39010 1.36939 1.45793 1.53830 1.94319 2.33791 2.44820 2.89503 3.26155 3.37771 3.92271 3.94644 3.99799 4.05031 4.17763 4.20482 4.29694 4.41225 4.44440 4.45679 4.58917 4.62391 4.71001 4.81826 4.84551 4.86727 4.89769 4.95752 5.04319 5.11094 5.25270 5.28155 5.36802 5.45608 5.47057 5.51108 5.57237 5.60978 5.63282 5.91378 6.09050 6.67331 6.99270 7.37241 7.67251 8.11460 8.91485 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.004999 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.703023 B = 5600.059570 C = 6343.823412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 C 0.121 3.879 4 N -0.537 5.537 5 C -0.315 4.315 6 H 0.093 0.907 7 C -0.024 4.024 8 N -0.890 5.890 9 Si 0.980 3.020 10 H -0.258 1.258 11 H -0.277 1.277 12 H -0.302 1.302 13 C 0.549 3.451 14 O -0.570 6.570 15 C 0.100 3.900 16 H 0.078 0.922 17 C -0.124 4.124 18 O -0.346 6.346 19 C 0.075 3.925 20 C -0.168 4.168 21 C -0.095 4.095 22 C -0.128 4.128 23 C -0.074 4.074 24 C -0.111 4.111 25 C -0.153 4.153 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.260 0.740 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.156 0.844 39 H 0.160 0.840 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.056 -6.984 -11.674 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.179 4.179 3 C -0.002 4.002 4 N -0.266 5.266 5 C -0.442 4.442 6 H 0.111 0.889 7 C -0.225 4.225 8 N -0.530 5.530 9 Si 0.807 3.193 10 H -0.182 1.182 11 H -0.202 1.202 12 H -0.229 1.229 13 C 0.339 3.661 14 O -0.448 6.448 15 C 0.041 3.959 16 H 0.095 0.905 17 C -0.182 4.182 18 O -0.263 6.263 19 C 0.032 3.968 20 C -0.187 4.187 21 C -0.113 4.113 22 C -0.145 4.145 23 C -0.074 4.074 24 C -0.168 4.168 25 C -0.171 4.171 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.174 0.826 39 H 0.178 0.822 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.249 -6.454 -11.818 17.546 hybrid contribution 1.094 0.311 1.165 1.628 sum -10.155 -6.143 -10.654 15.949 Atomic orbital electron populations 1.21673 0.93398 1.02368 1.02316 1.22085 0.97140 0.97001 1.01657 1.21550 0.80071 0.97170 1.01458 1.43083 1.04528 1.75339 1.03608 1.19638 0.93800 1.44470 0.86305 0.88890 1.25867 0.99038 0.96871 1.00695 1.69642 1.14581 1.36176 1.32641 0.85045 0.78147 0.77760 0.78357 1.18151 1.20245 1.22930 1.19678 0.80749 0.83420 0.82268 1.90385 1.36249 1.39047 1.79071 1.22263 0.94769 0.95792 0.83068 0.90477 1.21840 1.02769 0.93023 1.00569 1.86156 1.46764 1.81249 1.12176 1.19261 0.95493 0.94346 0.87724 1.21591 0.98072 1.00306 0.98697 1.21342 0.99056 0.97281 0.93607 1.21449 0.97894 0.93902 1.01270 1.20181 0.95722 0.98074 0.93438 1.20859 1.02199 0.92433 1.01278 1.21418 1.02332 0.95429 0.97951 0.92084 0.91716 0.92013 0.92826 0.92830 0.90677 0.92321 0.93009 0.92840 0.91364 0.91798 0.86588 0.82618 0.82227 0.89806 0.89234 0.91644 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.91 71.98 0.71 -2.54 16 2 C -0.14 -4.53 5.57 30.60 0.17 -4.36 16 3 C 0.12 4.63 5.17 86.38 0.45 5.07 16 4 N -0.54 -27.28 2.53 -635.55 -1.61 -28.89 16 5 C -0.32 -17.19 9.59 84.04 0.81 -16.38 16 6 H 0.09 4.77 7.87 -2.91 -0.02 4.74 16 7 C -0.02 -1.34 4.93 84.93 0.42 -0.92 16 8 N -0.89 -52.94 9.09 21.67 0.20 -52.74 16 9 Si 0.98 45.89 29.59 68.60 2.03 47.92 16 10 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 13 C 0.55 30.11 4.03 87.66 0.35 30.46 16 14 O -0.57 -37.18 15.91 15.87 0.25 -36.93 16 15 C 0.10 4.60 2.39 29.85 0.07 4.67 16 16 H 0.08 3.12 6.52 -2.39 -0.02 3.10 16 17 C -0.12 -5.42 8.18 71.98 0.59 -4.83 16 18 O -0.35 -16.50 9.25 -73.46 -0.68 -17.18 16 19 C 0.08 2.82 5.56 22.50 0.13 2.94 16 20 C -0.17 -5.34 9.99 22.36 0.22 -5.12 16 21 C -0.10 -2.18 10.04 22.25 0.22 -1.96 16 22 C -0.13 -2.57 9.70 22.28 0.22 -2.36 16 23 C -0.07 -1.74 5.88 -19.88 -0.12 -1.86 16 24 C -0.11 -1.79 10.01 71.24 0.71 -1.07 16 25 C -0.15 -4.84 9.64 22.37 0.22 -4.63 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.80 4.88 -2.39 -0.01 1.78 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 2.69 8.03 -2.38 -0.02 2.67 16 32 H 0.06 2.07 8.03 -2.39 -0.02 2.06 16 33 H 0.26 15.18 8.32 -92.71 -0.77 14.41 16 34 H 0.05 2.68 7.12 -2.39 -0.02 2.66 16 35 H 0.07 3.05 6.75 -2.39 -0.02 3.04 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.12 3.78 8.06 -2.91 -0.02 3.75 16 38 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 39 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 1.03 8.09 -2.39 -0.02 1.01 16 42 H 0.06 1.09 8.09 -2.38 -0.02 1.07 16 43 H 0.12 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -75.70 353.03 6.34 -69.36 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.98 Total: 21.35 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 5.17 Total: -2.89 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -1.41 Total: -81.63 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -0.43 Total: -54.11 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -75.70 6.34 -69.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098022225.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.963 kcal (2) G-P(sol) polarization free energy of solvation -75.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds