Wall clock time and date at job start Tue Mar 31 2020 06:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47425 * 2 1 4 4 N 1.46501 * 109.47342 * 174.56560 * 3 2 1 5 5 C 1.37099 * 119.99975 * 263.87164 * 4 3 2 6 6 H 1.07994 * 120.00241 * 190.31620 * 5 4 3 7 7 C 1.38956 * 119.99925 * 10.32689 * 5 4 3 8 8 N 1.31406 * 119.99873 * 19.91072 * 7 5 4 9 9 Si 1.86801 * 119.99832 * 199.91804 * 7 5 4 10 10 H 1.48503 * 109.47132 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47236 * 119.99501 * 9 7 5 12 12 H 1.48498 * 109.46749 * 239.99636 * 9 7 5 13 13 C 1.34772 * 120.00120 * 83.87940 * 4 3 2 14 14 O 1.21295 * 119.99935 * 5.58058 * 13 4 3 15 15 C 1.50703 * 120.00109 * 185.58795 * 13 4 3 16 16 H 1.08995 * 109.47151 * 42.94988 * 15 13 4 17 17 C 1.52993 * 109.46846 * 282.94904 * 15 13 4 18 18 C 1.50701 * 109.47013 * 162.95208 * 15 13 4 19 19 C 1.38271 * 119.94083 * 239.99836 * 18 15 13 20 20 C 1.38146 * 120.05233 * 180.02562 * 19 18 15 21 21 C 1.38732 * 119.94378 * 0.25507 * 20 19 18 22 22 O 1.35902 * 120.05251 * 179.74572 * 21 20 19 23 23 C 1.42898 * 116.99654 * 180.02562 * 22 21 20 24 24 C 1.38730 * 119.88792 * 359.46926 * 21 20 19 25 25 C 1.38140 * 119.94450 * 0.55352 * 24 21 20 26 26 H 1.08997 * 109.47454 * 300.00020 * 1 2 3 27 27 H 1.09001 * 109.46970 * 59.99703 * 1 2 3 28 28 H 1.09003 * 109.47554 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47026 * 239.99670 * 2 1 3 30 30 H 1.09001 * 109.46970 * 120.00297 * 2 1 3 31 31 H 1.09003 * 109.47250 * 54.56480 * 3 2 1 32 32 H 1.08997 * 109.47192 * 294.56748 * 3 2 1 33 33 H 0.97003 * 119.99570 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.47139 * 185.00578 * 17 15 13 35 35 H 1.08998 * 109.47529 * 305.00215 * 17 15 13 36 36 H 1.09005 * 109.47341 * 65.00860 * 17 15 13 37 37 H 1.07994 * 119.97459 * 359.97438 * 19 18 15 38 38 H 1.07997 * 120.02399 * 179.97438 * 20 19 18 39 39 H 1.09006 * 109.46899 * 179.97438 * 23 22 21 40 40 H 1.08995 * 109.46972 * 299.99504 * 23 22 21 41 41 H 1.08993 * 109.47421 * 60.00082 * 23 22 21 42 42 H 1.08007 * 120.02526 * 180.24891 * 24 21 20 43 43 H 1.08003 * 119.97273 * 179.72274 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4992 1.4444 0.1308 5 6 4.0767 1.6094 1.3632 6 1 5.1404 1.7778 1.4429 7 6 3.2933 1.5596 2.5099 8 7 2.1131 0.9830 2.4747 9 14 3.9180 2.3126 4.1012 10 1 5.2655 2.8953 3.8775 11 1 2.9845 3.3790 4.5441 12 1 4.0010 1.2615 5.1469 13 6 4.2738 1.2844 -0.9604 14 8 3.7681 1.2401 -2.0620 15 6 5.7684 1.1602 -0.8119 16 1 5.9967 0.5026 0.0269 17 6 6.3719 2.5424 -0.5554 18 6 6.3525 0.5836 -2.0758 19 6 7.0506 -0.6091 -2.0319 20 6 7.5875 -1.1394 -3.1890 21 6 7.4304 -0.4715 -4.3948 22 8 7.9621 -0.9886 -5.5336 23 6 7.7616 -0.2466 -6.7382 24 6 6.7247 0.7221 -4.4370 25 6 6.1901 1.2485 -3.2771 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.5994 1.9836 0.8373 32 1 1.7583 1.9274 -0.9346 33 1 1.5661 0.9486 3.2751 34 1 7.4591 2.4664 -0.5364 35 1 6.0693 3.2243 -1.3501 36 1 6.0175 2.9215 0.4032 37 1 7.1769 -1.1261 -1.0922 38 1 8.1330 -2.0709 -3.1542 39 1 8.2357 -0.7684 -7.5696 40 1 6.6933 -0.1496 -6.9316 41 1 8.2031 0.7443 -6.6325 42 1 6.5976 1.2419 -5.3752 43 1 5.6444 2.1800 -3.3087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107565206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:00 Heat of formation + Delta-G solvation = -45.055914 kcal Electronic energy + Delta-G solvation = -23810.199778 eV Core-core repulsion = 20435.090047 eV Total energy + Delta-G solvation = -3375.109732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.98367 -38.86813 -37.16860 -35.11666 -33.21097 -32.06586 -31.29735 -30.66844 -28.77195 -26.94865 -25.77842 -24.83957 -23.32319 -22.19378 -21.17171 -20.09665 -18.93091 -17.91452 -17.00594 -16.40430 -15.62445 -15.56548 -14.92763 -14.39641 -14.20008 -13.98185 -13.78324 -13.55574 -13.42220 -13.11649 -12.93570 -12.44788 -12.26464 -12.13232 -11.91741 -11.79327 -11.34712 -11.27968 -11.14850 -10.93478 -10.76271 -10.62761 -10.50012 -10.39969 -10.30374 -10.22094 -10.09028 -9.50185 -8.83265 -8.64234 -8.22989 -7.74513 -7.68310 -6.35883 -3.87143 1.73614 1.83631 3.07564 3.20081 3.22191 3.42491 3.90165 4.05097 4.17084 4.85161 5.01577 5.04810 5.15106 5.17454 5.28499 5.33404 5.44023 5.70639 5.78229 5.86100 5.97689 6.01063 6.09531 6.17884 6.19256 6.37318 6.42706 6.54166 6.54925 6.63600 6.66064 6.74075 6.81101 6.93029 7.05191 7.10909 7.11159 7.20031 7.36723 7.51377 7.64346 7.74499 7.82274 8.45432 9.07695 9.57065 9.97319 10.60904 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020552 B = 0.004382 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.045068 B = 6387.892985 C = 7180.185130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C 0.139 3.861 4 N -0.440 5.440 5 C -0.335 4.335 6 H 0.104 0.896 7 C 0.035 3.965 8 N -0.855 5.855 9 Si 0.915 3.085 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.459 3.541 14 O -0.604 6.604 15 C -0.055 4.055 16 H 0.093 0.907 17 C -0.137 4.137 18 C -0.086 4.086 19 C -0.079 4.079 20 C -0.158 4.158 21 C 0.111 3.889 22 O -0.324 6.324 23 C 0.030 3.970 24 C -0.213 4.213 25 C -0.036 4.036 26 H 0.054 0.946 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.029 0.971 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.033 0.967 33 H 0.266 0.734 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.094 0.906 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.121 0.879 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.475 -0.205 -7.418 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.152 4.152 3 C 0.017 3.983 4 N -0.156 5.156 5 C -0.463 4.463 6 H 0.122 0.878 7 C -0.170 4.170 8 N -0.494 5.494 9 Si 0.742 3.258 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.248 3.752 14 O -0.491 6.491 15 C -0.077 4.077 16 H 0.111 0.889 17 C -0.195 4.195 18 C -0.087 4.087 19 C -0.097 4.097 20 C -0.177 4.177 21 C 0.067 3.933 22 O -0.238 6.238 23 C -0.066 4.066 24 C -0.232 4.232 25 C -0.054 4.054 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.139 0.861 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.144 -0.424 -7.815 10.597 hybrid contribution -0.001 0.448 0.816 0.931 sum 7.143 0.024 -6.999 10.001 Atomic orbital electron populations 1.21560 0.97534 0.99646 1.00409 1.21674 0.93894 0.98432 1.01183 1.21292 0.80472 0.96928 0.99656 1.43787 1.05276 1.60607 1.05975 1.19855 0.95094 1.48985 0.82349 0.87816 1.25209 0.96125 0.96399 0.99253 1.70168 1.11518 1.38494 1.29208 0.86060 0.79054 0.79049 0.81668 1.19314 1.20645 1.20878 1.19835 0.88117 0.82681 0.84612 1.90521 1.75184 1.57505 1.25875 1.19979 0.94104 0.98312 0.95263 0.88862 1.21771 0.99606 0.95212 1.02887 1.19546 0.98735 0.95318 0.95062 1.20866 0.96504 0.94889 0.97454 1.20244 1.05879 1.01468 0.90123 1.18966 0.95058 0.93084 0.86213 1.86012 1.73427 1.49376 1.14953 1.22969 1.01620 0.96794 0.85190 1.21156 1.04792 0.97604 0.99603 1.20786 0.94180 0.99479 0.90955 0.92708 0.94628 0.94463 0.95221 0.89235 0.88378 0.94857 0.92301 0.92905 0.92965 0.90592 0.85592 0.85813 0.88749 0.92780 0.92914 0.86123 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.91 37.16 0.37 -2.23 16 2 C -0.11 -2.61 5.58 -26.74 -0.15 -2.76 16 3 C 0.14 3.38 4.57 -4.05 -0.02 3.37 16 4 N -0.44 -10.82 2.64 -114.81 -0.30 -11.12 16 5 C -0.34 -8.06 8.63 -14.93 -0.13 -8.19 16 6 H 0.10 2.34 4.84 -52.49 -0.25 2.08 16 7 C 0.03 0.82 5.01 -17.47 -0.09 0.74 16 8 N -0.86 -20.83 8.43 55.50 0.47 -20.36 16 9 Si 0.91 18.62 29.60 -169.99 -5.03 13.59 16 10 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.46 10.93 6.76 -10.99 -0.07 10.85 16 14 O -0.60 -15.72 14.28 5.54 0.08 -15.64 16 15 C -0.06 -1.09 2.05 -92.93 -0.19 -1.28 16 16 H 0.09 1.82 7.10 -51.93 -0.37 1.45 16 17 C -0.14 -2.37 8.63 37.15 0.32 -2.05 16 18 C -0.09 -1.59 4.57 -104.60 -0.48 -2.07 16 19 C -0.08 -1.32 9.66 -39.60 -0.38 -1.70 16 20 C -0.16 -2.50 9.99 -39.43 -0.39 -2.89 16 21 C 0.11 1.77 6.69 -39.22 -0.26 1.51 16 22 O -0.32 -4.61 10.50 -19.43 -0.20 -4.81 16 23 C 0.03 0.30 9.81 101.05 0.99 1.29 16 24 C -0.21 -3.42 9.04 -39.44 -0.36 -3.77 16 25 C -0.04 -0.65 7.88 -39.61 -0.31 -0.96 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 2.24 6.54 -51.93 -0.34 1.90 16 31 H 0.10 2.46 5.81 -51.93 -0.30 2.16 16 32 H 0.03 0.82 7.54 -51.93 -0.39 0.43 16 33 H 0.27 6.19 8.31 -40.82 -0.34 5.86 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.89 7.56 -51.93 -0.39 0.50 16 36 H 0.08 1.36 6.06 -51.93 -0.31 1.04 16 37 H 0.13 1.86 7.94 -52.49 -0.42 1.44 16 38 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 41 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 42 H 0.12 1.63 6.30 -52.48 -0.33 1.30 16 43 H 0.13 2.34 7.14 -52.48 -0.37 1.97 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -28.12 342.92 -7.35 -35.47 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.37 Total: 7.85 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -1.15 Total: -10.15 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: 0.16 Total: -31.48 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.12 Total: -20.45 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.12 -7.35 -35.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107565206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.585 kcal (2) G-P(sol) polarization free energy of solvation -28.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds