Wall clock time and date at job start Tue Mar 31 2020 06:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47425 * 2 1 4 4 N 1.46501 * 109.47342 * 174.56560 * 3 2 1 5 5 C 1.37099 * 119.99975 * 263.87164 * 4 3 2 6 6 H 1.07994 * 120.00241 * 190.31620 * 5 4 3 7 7 C 1.38956 * 119.99925 * 10.32689 * 5 4 3 8 8 N 1.31406 * 119.99873 * 19.91072 * 7 5 4 9 9 Si 1.86801 * 119.99832 * 199.91804 * 7 5 4 10 10 H 1.48503 * 109.47132 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47236 * 119.99501 * 9 7 5 12 12 H 1.48498 * 109.46749 * 239.99636 * 9 7 5 13 13 C 1.34772 * 120.00120 * 83.87940 * 4 3 2 14 14 O 1.21295 * 119.99935 * 5.58058 * 13 4 3 15 15 C 1.50703 * 120.00109 * 185.58795 * 13 4 3 16 16 H 1.08995 * 109.47151 * 42.94988 * 15 13 4 17 17 C 1.52993 * 109.46846 * 282.94904 * 15 13 4 18 18 C 1.50701 * 109.47013 * 162.95208 * 15 13 4 19 19 C 1.38271 * 119.94083 * 239.99836 * 18 15 13 20 20 C 1.38146 * 120.05233 * 180.02562 * 19 18 15 21 21 C 1.38732 * 119.94378 * 0.25507 * 20 19 18 22 22 O 1.35902 * 120.05251 * 179.74572 * 21 20 19 23 23 C 1.42898 * 116.99654 * 180.02562 * 22 21 20 24 24 C 1.38730 * 119.88792 * 359.46926 * 21 20 19 25 25 C 1.38140 * 119.94450 * 0.55352 * 24 21 20 26 26 H 1.08997 * 109.47454 * 300.00020 * 1 2 3 27 27 H 1.09001 * 109.46970 * 59.99703 * 1 2 3 28 28 H 1.09003 * 109.47554 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47026 * 239.99670 * 2 1 3 30 30 H 1.09001 * 109.46970 * 120.00297 * 2 1 3 31 31 H 1.09003 * 109.47250 * 54.56480 * 3 2 1 32 32 H 1.08997 * 109.47192 * 294.56748 * 3 2 1 33 33 H 0.97003 * 119.99570 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.47139 * 185.00578 * 17 15 13 35 35 H 1.08998 * 109.47529 * 305.00215 * 17 15 13 36 36 H 1.09005 * 109.47341 * 65.00860 * 17 15 13 37 37 H 1.07994 * 119.97459 * 359.97438 * 19 18 15 38 38 H 1.07997 * 120.02399 * 179.97438 * 20 19 18 39 39 H 1.09006 * 109.46899 * 179.97438 * 23 22 21 40 40 H 1.08995 * 109.46972 * 299.99504 * 23 22 21 41 41 H 1.08993 * 109.47421 * 60.00082 * 23 22 21 42 42 H 1.08007 * 120.02526 * 180.24891 * 24 21 20 43 43 H 1.08003 * 119.97273 * 179.72274 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4992 1.4444 0.1308 5 6 4.0767 1.6094 1.3632 6 1 5.1404 1.7778 1.4429 7 6 3.2933 1.5596 2.5099 8 7 2.1131 0.9830 2.4747 9 14 3.9180 2.3126 4.1012 10 1 5.2655 2.8953 3.8775 11 1 2.9845 3.3790 4.5441 12 1 4.0010 1.2615 5.1469 13 6 4.2738 1.2844 -0.9604 14 8 3.7681 1.2401 -2.0620 15 6 5.7684 1.1602 -0.8119 16 1 5.9967 0.5026 0.0269 17 6 6.3719 2.5424 -0.5554 18 6 6.3525 0.5836 -2.0758 19 6 7.0506 -0.6091 -2.0319 20 6 7.5875 -1.1394 -3.1890 21 6 7.4304 -0.4715 -4.3948 22 8 7.9621 -0.9886 -5.5336 23 6 7.7616 -0.2466 -6.7382 24 6 6.7247 0.7221 -4.4370 25 6 6.1901 1.2485 -3.2771 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.5994 1.9836 0.8373 32 1 1.7583 1.9274 -0.9346 33 1 1.5661 0.9486 3.2751 34 1 7.4591 2.4664 -0.5364 35 1 6.0693 3.2243 -1.3501 36 1 6.0175 2.9215 0.4032 37 1 7.1769 -1.1261 -1.0922 38 1 8.1330 -2.0709 -3.1542 39 1 8.2357 -0.7684 -7.5696 40 1 6.6933 -0.1496 -6.9316 41 1 8.2031 0.7443 -6.6325 42 1 6.5976 1.2419 -5.3752 43 1 5.6444 2.1800 -3.3087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107565206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:59 Heat of formation + Delta-G solvation = -58.858777 kcal Electronic energy + Delta-G solvation = -23810.798315 eV Core-core repulsion = 20435.090047 eV Total energy + Delta-G solvation = -3375.708269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31642 -40.45190 -38.50946 -36.94506 -34.79628 -33.81107 -33.07948 -31.93950 -29.99396 -27.96887 -27.53198 -26.61218 -24.81492 -23.47925 -22.70718 -21.77440 -20.72175 -19.09865 -18.70566 -18.00760 -16.95955 -16.59547 -16.49154 -16.04756 -15.79692 -15.60504 -15.34948 -15.18871 -14.70491 -14.59706 -14.37456 -13.93439 -13.69001 -13.62335 -13.36622 -13.06392 -12.87687 -12.76168 -12.64826 -12.56522 -12.34671 -12.10966 -12.06533 -11.96175 -11.85593 -11.71222 -11.59356 -11.37475 -10.71869 -10.17004 -9.81352 -9.63214 -8.97402 -8.18241 -5.75609 0.46183 0.53245 1.44829 1.53878 1.64231 2.10483 2.34743 2.41716 2.80208 3.16097 3.22197 3.89514 3.90952 4.00976 4.21255 4.33540 4.40323 4.41704 4.44941 4.49638 4.54952 4.59217 4.64255 4.72866 4.73759 4.78875 4.87424 5.04291 5.04580 5.11265 5.17697 5.23980 5.27385 5.32216 5.36346 5.46348 5.55445 5.64847 5.83606 5.85195 5.86372 5.94685 6.49318 6.58454 7.21822 7.70918 8.11509 8.79170 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020552 B = 0.004382 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.045068 B = 6387.892985 C = 7180.185130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.101 4.101 3 C 0.142 3.858 4 N -0.451 5.451 5 C -0.355 4.355 6 H 0.116 0.884 7 C -0.003 4.003 8 N -0.876 5.876 9 Si 0.981 3.019 10 H -0.258 1.258 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.447 3.553 14 O -0.634 6.634 15 C -0.047 4.047 16 H 0.092 0.908 17 C -0.129 4.129 18 C -0.110 4.110 19 C -0.083 4.083 20 C -0.162 4.162 21 C 0.112 3.888 22 O -0.332 6.332 23 C 0.019 3.981 24 C -0.215 4.215 25 C -0.051 4.051 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.010 0.990 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.019 0.981 33 H 0.268 0.732 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.124 0.876 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.143 0.857 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.836 -0.491 -7.537 11.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 C 0.019 3.981 4 N -0.168 5.168 5 C -0.481 4.481 6 H 0.134 0.866 7 C -0.206 4.206 8 N -0.514 5.514 9 Si 0.806 3.194 10 H -0.182 1.182 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.237 3.763 14 O -0.523 6.523 15 C -0.068 4.068 16 H 0.111 0.889 17 C -0.186 4.186 18 C -0.110 4.110 19 C -0.101 4.101 20 C -0.180 4.180 21 C 0.067 3.933 22 O -0.246 6.246 23 C -0.076 4.076 24 C -0.233 4.233 25 C -0.070 4.070 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.028 0.972 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.142 0.858 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.160 0.840 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.515 -0.708 -7.941 11.665 hybrid contribution -0.431 0.494 0.734 0.984 sum 8.084 -0.214 -7.207 10.832 Atomic orbital electron populations 1.21472 0.94689 1.01139 1.00901 1.21512 0.96372 0.97045 0.99027 1.21220 0.81085 0.97429 0.98346 1.44034 1.05405 1.60684 1.06671 1.20217 0.95920 1.49700 0.82303 0.86605 1.25989 0.96380 0.96291 1.01939 1.70257 1.12366 1.38727 1.30036 0.85045 0.78843 0.77845 0.77675 1.18185 1.20944 1.20982 1.20601 0.89961 0.81858 0.83925 1.90482 1.76249 1.58708 1.26901 1.19900 0.91125 0.99685 0.96084 0.88942 1.21710 1.01122 0.93662 1.02130 1.19567 1.00255 0.96557 0.94638 1.21058 0.96098 0.94223 0.98678 1.20536 1.05512 1.02145 0.89817 1.19114 0.94393 0.92732 0.87086 1.86011 1.73026 1.50101 1.15467 1.23310 1.02322 0.97654 0.84267 1.21343 1.04316 0.97899 0.99777 1.20751 0.94990 0.99364 0.91855 0.92685 0.93586 0.92475 0.97162 0.91241 0.89230 0.96214 0.92172 0.90167 0.93438 0.91332 0.84045 0.83614 0.85831 0.92612 0.91796 0.83974 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 9.91 71.98 0.71 -4.06 16 2 C -0.10 -4.76 5.58 30.59 0.17 -4.59 16 3 C 0.14 7.12 4.57 86.38 0.39 7.51 16 4 N -0.45 -22.75 2.64 -635.55 -1.68 -24.42 16 5 C -0.35 -17.13 8.63 84.04 0.73 -16.40 16 6 H 0.12 5.18 4.84 -2.91 -0.01 5.17 16 7 C 0.00 -0.16 5.01 84.93 0.43 0.27 16 8 N -0.88 -42.85 8.43 21.66 0.18 -42.67 16 9 Si 0.98 37.73 29.60 68.60 2.03 39.76 16 10 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 11 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 12 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 13 C 0.45 21.82 6.76 87.66 0.59 22.41 16 14 O -0.63 -34.16 14.28 -3.08 -0.04 -34.21 16 15 C -0.05 -1.85 2.05 -12.29 -0.03 -1.87 16 16 H 0.09 3.61 7.10 -2.39 -0.02 3.59 16 17 C -0.13 -4.39 8.63 71.98 0.62 -3.77 16 18 C -0.11 -4.05 4.57 -19.85 -0.09 -4.14 16 19 C -0.08 -2.67 9.66 22.26 0.22 -2.45 16 20 C -0.16 -4.82 9.99 22.37 0.22 -4.60 16 21 C 0.11 3.37 6.69 22.51 0.15 3.52 16 22 O -0.33 -8.68 10.50 -92.45 -0.97 -9.65 16 23 C 0.02 0.33 9.81 113.37 1.11 1.44 16 24 C -0.21 -6.69 9.04 22.36 0.20 -6.49 16 25 C -0.05 -1.87 7.88 22.25 0.18 -1.69 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 30 H 0.07 3.55 6.54 -2.39 -0.02 3.54 16 31 H 0.09 4.61 5.81 -2.39 -0.01 4.59 16 32 H 0.02 1.01 7.54 -2.39 -0.02 0.99 16 33 H 0.27 12.46 8.31 -92.71 -0.77 11.69 16 34 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.05 1.63 7.56 -2.39 -0.02 1.62 16 36 H 0.07 2.41 6.06 -2.38 -0.01 2.40 16 37 H 0.14 3.99 7.94 -2.91 -0.02 3.97 16 38 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 39 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.06 0.96 7.65 -2.39 -0.02 0.95 16 41 H 0.06 0.98 7.67 -2.39 -0.02 0.97 16 42 H 0.14 3.64 6.30 -2.91 -0.02 3.63 16 43 H 0.11 4.24 7.14 -2.91 -0.02 4.22 16 Total: -1.00 -60.77 342.92 6.13 -54.65 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 1.00 Total: 31.47 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 5.61 Total: -14.92 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: -1.49 Total: -67.09 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -1.01 Total: -43.86 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -60.77 6.13 -54.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107565206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.214 kcal (2) G-P(sol) polarization free energy of solvation -60.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds