Wall clock time and date at job start Tue Mar 31 2020 06:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47077 * 2 1 4 4 N 1.46500 * 109.46869 * 120.00245 * 2 1 3 5 5 C 1.34779 * 119.99953 * 126.84728 * 4 2 1 6 6 O 1.21592 * 119.99864 * 353.63716 * 5 4 2 7 7 C 1.47528 * 120.00156 * 173.63388 * 5 4 2 8 8 C 1.39669 * 120.19546 * 308.95633 * 7 5 4 9 9 C 1.37831 * 119.91737 * 180.29673 * 8 7 5 10 10 C 1.38572 * 120.32344 * 359.70422 * 9 8 7 11 11 C 1.38024 * 120.40302 * 359.97438 * 10 9 8 12 12 C 1.38840 * 120.07074 * 0.02683 * 11 10 9 13 13 O 1.35516 * 120.15706 * 179.97438 * 12 11 10 14 14 C 1.34810 * 117.00352 * 3.70027 * 13 12 11 15 15 H 1.07996 * 120.00258 * 355.00546 * 14 13 12 16 16 C 1.38699 * 120.00050 * 174.99998 * 14 13 12 17 17 N 1.31527 * 119.99718 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00156 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46862 * 90.00118 * 18 16 14 20 20 H 1.48505 * 109.46807 * 210.00100 * 18 16 14 21 21 H 1.48491 * 109.46906 * 329.99998 * 18 16 14 22 22 C 1.46498 * 120.00013 * 306.84568 * 4 2 1 23 23 C 1.53000 * 109.47219 * 9.13506 * 22 4 2 24 24 C 1.53001 * 109.46844 * 129.13854 * 22 4 2 25 25 H 1.08994 * 109.47131 * 330.61011 * 1 2 3 26 26 H 1.09007 * 109.47091 * 90.60793 * 1 2 3 27 27 H 1.09001 * 109.47046 * 210.60216 * 1 2 3 28 28 H 1.09007 * 109.47267 * 240.00229 * 2 1 3 29 29 H 1.08999 * 109.47171 * 200.17969 * 3 2 1 30 30 H 1.08997 * 109.47648 * 320.17936 * 3 2 1 31 31 H 1.09001 * 109.47127 * 80.18208 * 3 2 1 32 32 H 1.08000 * 120.04087 * 0.02562 * 8 7 5 33 33 H 1.08000 * 119.83677 * 179.72705 * 9 8 7 34 34 H 1.07999 * 119.79869 * 180.02562 * 10 9 8 35 35 H 1.07995 * 119.96398 * 180.02562 * 11 10 9 36 36 H 0.97007 * 119.99396 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.46661 * 249.13427 * 22 4 2 38 38 H 1.09000 * 109.46844 * 76.24229 * 23 22 4 39 39 H 1.08997 * 109.47276 * 196.24334 * 23 22 4 40 40 H 1.08999 * 109.46617 * 316.24538 * 23 22 4 41 41 H 1.08993 * 109.47381 * 69.97448 * 24 22 4 42 42 H 1.09000 * 109.46377 * 189.97244 * 24 22 4 43 43 H 1.08999 * 109.47032 * 309.96881 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.9028 -1.7006 1.0773 6 8 3.2076 -2.1154 -0.0243 7 6 3.5014 -2.3028 2.2837 8 6 4.0923 -1.4912 3.2547 9 6 4.6553 -2.0603 4.3767 10 6 4.6329 -3.4350 4.5501 11 6 4.0466 -4.2491 3.6022 12 6 3.4746 -3.6934 2.4657 13 8 2.8990 -4.4911 1.5336 14 6 2.8464 -5.8105 1.8054 15 1 3.3233 -6.1984 2.6933 16 6 2.1796 -6.6698 0.9448 17 7 1.5991 -6.1974 -0.1368 18 14 2.1060 -8.4979 1.3217 19 1 0.9026 -8.7860 2.1427 20 1 2.0330 -9.2628 0.0509 21 1 3.3239 -8.8981 2.0710 22 6 1.5451 -0.2836 2.5215 23 6 0.3939 0.7125 2.3683 24 6 1.0565 -1.5139 3.2886 25 1 -0.3633 0.8954 0.5043 26 1 -0.3634 -0.0109 -1.0277 27 1 -0.3633 -0.8845 0.5232 28 1 1.8934 -0.5138 -0.8901 29 1 3.0705 1.4635 -0.3545 30 1 1.4170 2.0482 -0.6581 31 1 1.9959 1.8434 1.0126 32 1 4.1120 -0.4192 3.1244 33 1 5.1157 -1.4318 5.1246 34 1 5.0761 -3.8719 5.4327 35 1 4.0328 -5.3195 3.7447 36 1 1.1330 -6.7985 -0.7389 37 1 2.3615 0.1862 3.0702 38 1 -0.5137 0.1783 2.0875 39 1 0.2331 1.2302 3.3139 40 1 0.6424 1.4386 1.5942 41 1 1.9088 -2.1398 3.5524 42 1 0.5444 -1.1959 4.1968 43 1 0.3679 -2.0821 2.6633 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110294174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:03 Heat of formation + Delta-G solvation = -3.958469 kcal Electronic energy + Delta-G solvation = -24813.327762 eV Core-core repulsion = 21440.000149 eV Total energy + Delta-G solvation = -3373.327613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.32782 -38.69854 -36.62233 -36.42109 -33.30220 -32.34857 -31.03034 -29.95428 -28.95039 -27.20265 -26.48286 -25.41620 -23.49706 -21.82183 -21.39873 -20.74407 -18.82235 -18.03302 -17.23182 -16.33956 -15.50469 -15.31511 -14.74240 -14.65217 -14.34652 -14.03617 -13.70112 -13.55005 -13.39141 -13.02815 -12.90559 -12.68803 -12.58550 -12.23678 -12.03306 -11.73761 -11.58471 -11.54356 -11.42081 -11.20450 -11.05086 -11.02059 -10.81286 -10.61059 -10.55829 -10.43945 -9.91401 -9.56835 -8.92140 -8.88070 -8.20594 -8.06401 -7.28876 -6.46715 -4.06385 1.83713 2.30852 3.11404 3.11881 3.17073 3.40529 3.60832 3.92873 4.51471 4.97192 5.05257 5.08092 5.12999 5.19066 5.20844 5.34365 5.43220 5.46303 5.56881 5.67269 5.74204 5.77700 5.80434 5.87617 5.94483 6.02523 6.03726 6.14215 6.17037 6.21192 6.40007 6.44714 6.49319 6.58168 6.66761 6.75852 6.94736 7.06439 7.15740 7.26814 7.31391 7.68465 7.91417 8.02398 8.94866 8.99103 9.64857 10.68829 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015798 B = 0.006090 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.941411 B = 4596.616436 C = 5600.124336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.133 3.867 3 C -0.167 4.167 4 N -0.611 5.611 5 C 0.578 3.422 6 O -0.521 6.521 7 C -0.206 4.206 8 C -0.045 4.045 9 C -0.223 4.223 10 C -0.057 4.057 11 C -0.236 4.236 12 C 0.185 3.815 13 O -0.147 6.147 14 C -0.399 4.399 15 H 0.094 0.906 16 C 0.043 3.957 17 N -0.844 5.844 18 Si 0.941 3.059 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.266 1.266 22 C 0.145 3.855 23 C -0.184 4.184 24 C -0.180 4.180 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.271 0.729 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 12.406 6.830 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.030 3.970 3 C -0.225 4.225 4 N -0.347 5.347 5 C 0.368 3.632 6 O -0.396 6.396 7 C -0.210 4.210 8 C -0.063 4.063 9 C -0.242 4.242 10 C -0.076 4.076 11 C -0.255 4.255 12 C 0.127 3.873 13 O -0.048 6.048 14 C -0.475 4.475 15 H 0.111 0.889 16 C -0.163 4.163 17 N -0.477 5.477 18 Si 0.766 3.234 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.191 1.191 22 C 0.041 3.959 23 C -0.241 4.241 24 C -0.238 4.238 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.716 12.104 5.757 13.512 hybrid contribution -0.033 -1.004 0.365 1.069 sum -1.748 11.100 6.121 12.796 Atomic orbital electron populations 1.22870 0.95348 1.02884 1.01983 1.20896 0.93923 0.92468 0.89728 1.22413 1.01590 0.96309 1.02210 1.48117 1.44958 1.35484 1.06139 1.18152 0.78034 0.78056 0.88992 1.90771 1.61217 1.59837 1.27786 1.18670 1.12692 0.91265 0.98388 1.20702 0.95657 0.97813 0.92175 1.20460 1.09146 0.94811 0.99755 1.20867 0.95949 0.93477 0.97261 1.21134 1.07072 1.00821 0.96505 1.19191 0.90767 0.89252 0.88093 1.84029 1.65114 1.18730 1.36884 1.21410 1.36205 0.79345 1.10523 0.88852 1.25356 0.95519 1.00408 0.95044 1.70087 1.30791 1.36016 1.10795 0.85712 0.79100 0.80334 0.78287 1.19796 1.20151 1.19057 1.20934 0.96001 0.95409 0.83525 1.23049 0.98948 0.99608 1.02498 1.22560 1.03346 0.98217 0.99633 0.90905 0.92726 0.91583 0.88394 0.92547 0.91825 0.91466 0.86777 0.87246 0.87218 0.85100 0.91875 0.91342 0.91108 0.92387 0.89791 0.89673 0.92408 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 7.58 37.16 0.28 -2.01 16 2 C 0.13 2.06 3.15 -67.93 -0.21 1.85 16 3 C -0.17 -1.98 8.74 37.16 0.32 -1.65 16 4 N -0.61 -10.76 2.54 -159.80 -0.41 -11.17 16 5 C 0.58 13.08 6.55 -12.47 -0.08 13.00 16 6 O -0.52 -14.22 15.99 -1.23 -0.02 -14.24 16 7 C -0.21 -4.47 3.18 -104.81 -0.33 -4.81 16 8 C -0.04 -0.79 7.23 -39.20 -0.28 -1.07 16 9 C -0.22 -3.65 10.03 -39.61 -0.40 -4.04 16 10 C -0.06 -1.00 10.03 -39.54 -0.40 -1.40 16 11 C -0.24 -5.04 9.16 -39.44 -0.36 -5.40 16 12 C 0.18 4.53 6.08 -38.60 -0.23 4.30 16 13 O -0.15 -4.32 8.88 -5.69 -0.05 -4.37 16 14 C -0.40 -11.25 9.49 30.90 0.29 -10.95 16 15 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 16 C 0.04 1.20 5.49 -17.51 -0.10 1.11 16 17 N -0.84 -25.36 13.67 55.48 0.76 -24.60 16 18 Si 0.94 20.59 29.55 -169.99 -5.02 15.56 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 C 0.14 2.07 2.47 -67.93 -0.17 1.91 16 23 C -0.18 -2.03 7.00 37.16 0.26 -1.77 16 24 C -0.18 -2.91 8.47 37.16 0.31 -2.60 16 25 H 0.07 0.76 4.89 -51.93 -0.25 0.51 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.01 7.27 -51.93 -0.38 0.64 16 28 H 0.10 1.81 6.92 -51.92 -0.36 1.45 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.62 7.98 -51.93 -0.41 0.20 16 31 H 0.07 0.72 5.58 -51.93 -0.29 0.43 16 32 H 0.11 1.71 6.66 -52.49 -0.35 1.36 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.13 2.77 5.62 -52.49 -0.30 2.48 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.07 0.91 5.99 -51.93 -0.31 0.60 16 38 H 0.07 0.81 5.79 -51.93 -0.30 0.50 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.85 2.95 -51.93 -0.15 0.70 16 41 H 0.08 1.58 4.06 -51.93 -0.21 1.37 16 42 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 330.62 15.07 4.98 4.98 Total: -1.00 -33.61 330.62 -6.53 -40.14 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.68 Total: 7.23 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -1.09 Total: -13.54 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.35 Total: -35.77 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.07 Total: -18.61 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.61 -6.53 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110294174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.179 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds