Wall clock time and date at job start Tue Mar 31 2020 06:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47077 * 2 1 4 4 N 1.46500 * 109.46869 * 120.00245 * 2 1 3 5 5 C 1.34779 * 119.99953 * 126.84728 * 4 2 1 6 6 O 1.21592 * 119.99864 * 353.63716 * 5 4 2 7 7 C 1.47528 * 120.00156 * 173.63388 * 5 4 2 8 8 C 1.39669 * 120.19546 * 308.95633 * 7 5 4 9 9 C 1.37831 * 119.91737 * 180.29673 * 8 7 5 10 10 C 1.38572 * 120.32344 * 359.70422 * 9 8 7 11 11 C 1.38024 * 120.40302 * 359.97438 * 10 9 8 12 12 C 1.38840 * 120.07074 * 0.02683 * 11 10 9 13 13 O 1.35516 * 120.15706 * 179.97438 * 12 11 10 14 14 C 1.34810 * 117.00352 * 3.70027 * 13 12 11 15 15 H 1.07996 * 120.00258 * 355.00546 * 14 13 12 16 16 C 1.38699 * 120.00050 * 174.99998 * 14 13 12 17 17 N 1.31527 * 119.99718 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00156 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46862 * 90.00118 * 18 16 14 20 20 H 1.48505 * 109.46807 * 210.00100 * 18 16 14 21 21 H 1.48491 * 109.46906 * 329.99998 * 18 16 14 22 22 C 1.46498 * 120.00013 * 306.84568 * 4 2 1 23 23 C 1.53000 * 109.47219 * 9.13506 * 22 4 2 24 24 C 1.53001 * 109.46844 * 129.13854 * 22 4 2 25 25 H 1.08994 * 109.47131 * 330.61011 * 1 2 3 26 26 H 1.09007 * 109.47091 * 90.60793 * 1 2 3 27 27 H 1.09001 * 109.47046 * 210.60216 * 1 2 3 28 28 H 1.09007 * 109.47267 * 240.00229 * 2 1 3 29 29 H 1.08999 * 109.47171 * 200.17969 * 3 2 1 30 30 H 1.08997 * 109.47648 * 320.17936 * 3 2 1 31 31 H 1.09001 * 109.47127 * 80.18208 * 3 2 1 32 32 H 1.08000 * 120.04087 * 0.02562 * 8 7 5 33 33 H 1.08000 * 119.83677 * 179.72705 * 9 8 7 34 34 H 1.07999 * 119.79869 * 180.02562 * 10 9 8 35 35 H 1.07995 * 119.96398 * 180.02562 * 11 10 9 36 36 H 0.97007 * 119.99396 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.46661 * 249.13427 * 22 4 2 38 38 H 1.09000 * 109.46844 * 76.24229 * 23 22 4 39 39 H 1.08997 * 109.47276 * 196.24334 * 23 22 4 40 40 H 1.08999 * 109.46617 * 316.24538 * 23 22 4 41 41 H 1.08993 * 109.47381 * 69.97448 * 24 22 4 42 42 H 1.09000 * 109.46377 * 189.97244 * 24 22 4 43 43 H 1.08999 * 109.47032 * 309.96881 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.9028 -1.7006 1.0773 6 8 3.2076 -2.1154 -0.0243 7 6 3.5014 -2.3028 2.2837 8 6 4.0923 -1.4912 3.2547 9 6 4.6553 -2.0603 4.3767 10 6 4.6329 -3.4350 4.5501 11 6 4.0466 -4.2491 3.6022 12 6 3.4746 -3.6934 2.4657 13 8 2.8990 -4.4911 1.5336 14 6 2.8464 -5.8105 1.8054 15 1 3.3233 -6.1984 2.6933 16 6 2.1796 -6.6698 0.9448 17 7 1.5991 -6.1974 -0.1368 18 14 2.1060 -8.4979 1.3217 19 1 0.9026 -8.7860 2.1427 20 1 2.0330 -9.2628 0.0509 21 1 3.3239 -8.8981 2.0710 22 6 1.5451 -0.2836 2.5215 23 6 0.3939 0.7125 2.3683 24 6 1.0565 -1.5139 3.2886 25 1 -0.3633 0.8954 0.5043 26 1 -0.3634 -0.0109 -1.0277 27 1 -0.3633 -0.8845 0.5232 28 1 1.8934 -0.5138 -0.8901 29 1 3.0705 1.4635 -0.3545 30 1 1.4170 2.0482 -0.6581 31 1 1.9959 1.8434 1.0126 32 1 4.1120 -0.4192 3.1244 33 1 5.1157 -1.4318 5.1246 34 1 5.0761 -3.8719 5.4327 35 1 4.0328 -5.3195 3.7447 36 1 1.1330 -6.7985 -0.7389 37 1 2.3615 0.1862 3.0702 38 1 -0.5137 0.1783 2.0875 39 1 0.2331 1.2302 3.3139 40 1 0.6424 1.4386 1.5942 41 1 1.9088 -2.1398 3.5524 42 1 0.5444 -1.1959 4.1968 43 1 0.3679 -2.0821 2.6633 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110294174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:02 Heat of formation + Delta-G solvation = -26.581074 kcal Electronic energy + Delta-G solvation = -24814.308752 eV Core-core repulsion = 21440.000149 eV Total energy + Delta-G solvation = -3374.308602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.87238 -40.33787 -38.24226 -38.13356 -34.57313 -34.35375 -32.43832 -31.42812 -30.60419 -28.26104 -27.65930 -27.40477 -25.05145 -23.37089 -22.77076 -22.17245 -20.26505 -19.88825 -18.84695 -18.03843 -17.01561 -16.75191 -16.38746 -16.17743 -15.82118 -15.70312 -15.34983 -14.99570 -14.75117 -14.48730 -14.30305 -14.28606 -13.75475 -13.71504 -13.56898 -13.11567 -13.02703 -12.80279 -12.78417 -12.63615 -12.51861 -12.36727 -12.23399 -12.16224 -11.95316 -11.70300 -11.43375 -11.00862 -10.85608 -10.62666 -9.75663 -9.52001 -9.01713 -8.49132 -6.19065 0.25466 0.71345 1.30166 1.41514 1.49281 1.78962 2.12905 2.14211 2.81391 3.15485 3.40877 3.63789 3.95379 4.00333 4.02740 4.11689 4.16873 4.26882 4.31571 4.37364 4.56332 4.58965 4.63931 4.69498 4.73969 4.83614 4.88333 4.91810 4.97755 5.06082 5.08030 5.11333 5.15179 5.21077 5.34093 5.40889 5.46885 5.51649 5.59968 5.70378 5.84081 5.95121 6.16101 6.48559 6.92467 7.32578 7.76083 8.73010 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015798 B = 0.006090 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.941411 B = 4596.616436 C = 5600.124336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.121 3.879 3 C -0.155 4.155 4 N -0.600 5.600 5 C 0.564 3.436 6 O -0.590 6.590 7 C -0.214 4.214 8 C -0.040 4.040 9 C -0.188 4.188 10 C -0.048 4.048 11 C -0.251 4.251 12 C 0.145 3.855 13 O -0.213 6.213 14 C -0.419 4.419 15 H 0.107 0.893 16 C -0.024 4.024 17 N -0.916 5.916 18 Si 1.022 2.978 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.248 1.248 22 C 0.138 3.862 23 C -0.180 4.180 24 C -0.176 4.176 25 H 0.113 0.887 26 H 0.059 0.941 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.151 0.849 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.123 0.877 36 H 0.271 0.729 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 15.605 10.964 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.018 3.982 3 C -0.213 4.213 4 N -0.334 5.334 5 C 0.354 3.646 6 O -0.471 6.471 7 C -0.218 4.218 8 C -0.059 4.059 9 C -0.206 4.206 10 C -0.066 4.066 11 C -0.270 4.270 12 C 0.091 3.909 13 O -0.118 6.118 14 C -0.495 4.495 15 H 0.124 0.876 16 C -0.222 4.222 17 N -0.552 5.552 18 Si 0.841 3.159 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.172 1.172 22 C 0.036 3.964 23 C -0.236 4.236 24 C -0.234 4.234 25 H 0.131 0.869 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.168 0.832 33 H 0.182 0.818 34 H 0.171 0.829 35 H 0.140 0.860 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -0.998 15.388 9.978 18.367 hybrid contribution -0.128 -1.657 -0.668 1.791 sum -1.126 13.731 9.310 16.628 Atomic orbital electron populations 1.22856 0.93480 1.03362 1.02570 1.21142 0.95412 0.94273 0.87365 1.22331 1.01301 0.93317 1.04324 1.48270 1.42890 1.33817 1.08430 1.18588 0.78749 0.78774 0.88459 1.90726 1.63973 1.62248 1.30124 1.19004 1.12973 0.90829 0.99004 1.21146 0.94208 0.99210 0.91303 1.21130 1.05444 0.94760 0.99304 1.21371 0.94100 0.93943 0.97211 1.21284 1.07821 1.01186 0.96711 1.19874 0.91600 0.90339 0.89051 1.84017 1.68632 1.19358 1.39764 1.21948 1.36515 0.79928 1.11135 0.87570 1.26739 0.94875 1.06042 0.94581 1.70278 1.33936 1.38013 1.13021 0.84554 0.80018 0.73048 0.78325 1.18415 1.19887 1.17182 1.21301 0.98205 0.95368 0.81515 1.23025 0.96870 0.98790 1.04911 1.22509 1.01790 0.98405 1.00661 0.86861 0.92206 0.94536 0.92970 0.93655 0.88924 0.89113 0.83194 0.81822 0.82855 0.85971 0.92037 0.88725 0.91828 0.88998 0.88343 0.92179 0.88971 0.96095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.34 7.58 71.98 0.55 -3.79 16 2 C 0.12 3.82 3.15 44.99 0.14 3.96 16 3 C -0.16 -3.29 8.74 71.98 0.63 -2.66 16 4 N -0.60 -21.48 2.54 -777.73 -1.97 -23.45 16 5 C 0.56 27.08 6.55 86.69 0.57 27.64 16 6 O -0.59 -35.44 15.99 2.22 0.04 -35.40 16 7 C -0.21 -9.50 3.18 -19.99 -0.06 -9.57 16 8 C -0.04 -1.29 7.23 22.52 0.16 -1.13 16 9 C -0.19 -5.11 10.03 22.25 0.22 -4.89 16 10 C -0.05 -1.51 10.03 22.30 0.22 -1.28 16 11 C -0.25 -10.78 9.16 22.36 0.20 -10.57 16 12 C 0.14 7.49 6.08 22.91 0.14 7.63 16 13 O -0.21 -13.69 8.88 -13.75 -0.12 -13.81 16 14 C -0.42 -25.54 9.49 67.93 0.64 -24.89 16 15 H 0.11 5.81 5.20 -2.91 -0.02 5.79 16 16 C -0.02 -1.46 5.49 84.85 0.47 -0.99 16 17 N -0.92 -60.21 13.67 21.62 0.30 -59.91 16 18 Si 1.02 44.65 29.55 68.60 2.03 46.68 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 22 C 0.14 3.62 2.47 44.99 0.11 3.73 16 23 C -0.18 -3.22 7.00 71.98 0.50 -2.71 16 24 C -0.18 -5.58 8.47 71.98 0.61 -4.97 16 25 H 0.11 2.02 4.89 -2.39 -0.01 2.01 16 26 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.04 1.17 7.27 -2.39 -0.02 1.15 16 28 H 0.05 2.12 6.92 -2.38 -0.02 2.10 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.46 7.98 -2.39 -0.02 1.44 16 31 H 0.09 1.51 5.58 -2.39 -0.01 1.49 16 32 H 0.15 3.71 6.66 -2.91 -0.02 3.69 16 33 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.12 5.34 5.62 -2.91 -0.02 5.32 16 36 H 0.27 16.32 8.31 -92.70 -0.77 15.55 16 37 H 0.10 2.04 5.99 -2.39 -0.01 2.03 16 38 H 0.06 1.27 5.79 -2.39 -0.01 1.26 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.10 1.49 2.95 -2.39 -0.01 1.49 16 41 H 0.06 2.21 4.06 -2.39 -0.01 2.20 16 42 H 0.09 2.21 8.11 -2.39 -0.02 2.20 16 43 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -88.38 330.62 6.40 -81.97 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 1.03 Total: 28.42 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 5.11 Total: -24.49 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -1.68 Total: -83.37 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -0.09 Total: -49.21 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -88.38 6.40 -81.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110294174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.390 kcal (2) G-P(sol) polarization free energy of solvation -88.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds