Wall clock time and date at job start Tue Mar 31 2020 06:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46824 * 2 1 4 4 N 1.46504 * 109.46857 * 179.97438 * 3 2 1 5 5 C 1.36877 * 119.99918 * 283.28885 * 4 3 2 6 6 H 1.07992 * 120.00024 * 314.90721 * 5 4 3 7 7 C 1.39044 * 119.99613 * 134.90734 * 5 4 3 8 8 N 1.31361 * 120.00476 * 338.82726 * 7 5 4 9 9 Si 1.86803 * 119.99927 * 158.82546 * 7 5 4 10 10 H 1.48504 * 109.46978 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46850 * 119.99933 * 9 7 5 12 12 H 1.48492 * 109.47368 * 240.00186 * 9 7 5 13 13 C 1.34771 * 120.00140 * 103.29529 * 4 3 2 14 14 O 1.21586 * 120.00391 * 186.51106 * 13 4 3 15 15 C 1.47740 * 119.99939 * 6.50506 * 13 4 3 16 16 C 1.39677 * 120.12560 * 323.93322 * 15 13 4 17 17 C 1.37943 * 119.95892 * 180.02562 * 16 15 13 18 18 C 1.38306 * 120.21394 * 359.71782 * 17 16 15 19 19 C 1.50703 * 119.87585 * 180.27643 * 18 17 16 20 20 C 1.38832 * 120.24723 * 0.55411 * 18 17 16 21 21 O 1.35913 * 119.97485 * 179.72012 * 20 18 17 22 22 C 1.42905 * 116.99518 * 179.73081 * 21 20 18 23 23 C 1.52998 * 109.47046 * 180.02562 * 22 21 20 24 24 C 1.38464 * 120.04055 * 359.45276 * 20 18 17 25 25 H 1.09003 * 109.47066 * 60.00019 * 1 2 3 26 26 H 1.09001 * 109.47480 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47286 * 299.99884 * 1 2 3 28 28 H 1.08996 * 109.47335 * 239.99852 * 2 1 3 29 29 H 1.09004 * 109.47267 * 119.99223 * 2 1 3 30 30 H 1.09000 * 109.46968 * 60.00198 * 3 2 1 31 31 H 1.08994 * 109.47228 * 299.99950 * 3 2 1 32 32 H 0.97001 * 120.00049 * 185.03718 * 8 7 5 33 33 H 1.07998 * 120.02265 * 0.03890 * 16 15 13 34 34 H 1.07999 * 119.89335 * 180.02562 * 17 16 15 35 35 H 1.08999 * 109.46990 * 270.27834 * 19 18 17 36 36 H 1.09000 * 109.46820 * 30.27446 * 19 18 17 37 37 H 1.09004 * 109.46961 * 150.27702 * 19 18 17 38 38 H 1.08995 * 109.47226 * 59.99979 * 22 21 20 39 39 H 1.08999 * 109.46831 * 300.00019 * 22 21 20 40 40 H 1.08995 * 109.47419 * 59.99737 * 23 22 21 41 41 H 1.08998 * 109.47013 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.47027 * 299.99539 * 23 22 21 43 43 H 1.07997 * 120.10989 * 180.25249 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1888 1.1703 1.1546 6 1 3.8866 1.6317 2.0830 7 6 5.2726 0.2996 1.1314 8 7 5.3980 -0.5673 0.1524 9 14 6.5506 0.3625 2.4924 10 1 6.1818 1.4184 3.4693 11 1 6.6048 -0.9518 3.1816 12 1 7.8808 0.6705 1.9086 13 6 4.1793 1.7108 -1.1350 14 8 5.3893 1.5954 -1.1653 15 6 3.4482 2.1450 -2.3432 16 6 2.1885 1.6138 -2.6291 17 6 1.5092 2.0212 -3.7584 18 6 2.0688 2.9592 -4.6068 19 6 1.3173 3.4035 -5.8351 20 6 3.3229 3.4888 -4.3340 21 8 3.8701 4.4061 -5.1745 22 6 5.1608 4.9133 -4.8296 23 6 5.6092 5.9265 -5.8847 24 6 4.0140 3.0872 -3.2034 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 6.1125 -1.2229 0.1736 33 1 1.7464 0.8847 -1.9663 34 1 0.5350 1.6101 -3.9782 35 1 1.5732 2.7541 -6.6723 36 1 0.2454 3.3466 -5.6456 37 1 1.5897 4.4312 -6.0759 38 1 5.8751 4.0911 -4.7882 39 1 5.1112 5.4009 -3.8560 40 1 4.8948 6.7487 -5.9257 41 1 6.5939 6.3130 -5.6218 42 1 5.6587 5.4392 -6.8584 43 1 4.9878 3.5014 -2.9880 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113153537.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:57 Heat of formation + Delta-G solvation = -31.695960 kcal Electronic energy + Delta-G solvation = -24008.416149 eV Core-core repulsion = 20633.885748 eV Total energy + Delta-G solvation = -3374.530401 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.12129 -38.61691 -36.76576 -35.10181 -33.04287 -32.21115 -31.50202 -31.05840 -29.41163 -27.10430 -25.71212 -24.43135 -23.76560 -21.68139 -21.31583 -20.76360 -19.62792 -17.89648 -16.35014 -15.97869 -15.78580 -15.66552 -15.25935 -14.72186 -14.13474 -13.84024 -13.61979 -13.53224 -13.40593 -13.15161 -12.71772 -12.65280 -12.56641 -12.30432 -12.04790 -11.80868 -11.63365 -11.39395 -11.25976 -11.21384 -10.89602 -10.76129 -10.62617 -10.58777 -10.50708 -10.32164 -10.16939 -9.83848 -8.77467 -8.39495 -8.10713 -7.64504 -7.12173 -6.13056 -3.85452 1.53542 1.81346 3.29403 3.38021 3.39727 3.41558 3.86934 4.29146 4.64976 4.84700 4.96860 5.01899 5.14589 5.20984 5.25392 5.31029 5.48009 5.55591 5.60782 5.64718 5.69580 5.77591 5.77890 5.81237 5.86954 5.94229 5.97663 6.02518 6.09199 6.17022 6.34274 6.40768 6.43814 6.48777 6.70560 6.78621 6.83439 6.98154 7.11455 7.15515 7.61822 7.68406 8.27718 9.03125 9.15907 9.62946 10.27549 10.94857 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.005566 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.344442 B = 5029.627122 C = 6590.276969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.081 3.919 4 N -0.438 5.438 5 C -0.352 4.352 6 H 0.080 0.920 7 C 0.076 3.924 8 N -0.821 5.821 9 Si 0.909 3.091 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.280 1.280 13 C 0.500 3.500 14 O -0.533 6.533 15 C -0.058 4.058 16 C -0.151 4.151 17 C -0.094 4.094 18 C -0.124 4.124 19 C -0.099 4.099 20 C 0.118 3.882 21 O -0.317 6.317 22 C 0.051 3.949 23 C -0.148 4.148 24 C -0.166 4.166 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.264 0.736 33 H 0.149 0.851 34 H 0.126 0.874 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.025 7.186 -8.870 13.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C -0.043 4.043 4 N -0.158 5.158 5 C -0.479 4.479 6 H 0.098 0.902 7 C -0.136 4.136 8 N -0.453 5.453 9 Si 0.736 3.264 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.206 1.206 13 C 0.288 3.712 14 O -0.411 6.411 15 C -0.062 4.062 16 C -0.170 4.170 17 C -0.112 4.112 18 C -0.125 4.125 19 C -0.155 4.155 20 C 0.073 3.927 21 O -0.232 6.232 22 C -0.024 4.024 23 C -0.205 4.205 24 C -0.186 4.186 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.166 0.834 34 H 0.143 0.857 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.308 7.103 -9.142 13.691 hybrid contribution 0.849 -0.269 0.873 1.247 sum -6.459 6.834 -8.269 12.522 Atomic orbital electron populations 1.21773 0.96770 1.00996 1.01177 1.21842 0.93756 0.98406 1.03324 1.22199 0.84375 0.96115 1.01603 1.43131 1.02826 1.61030 1.08818 1.19000 1.13493 1.28036 0.87364 0.90187 1.25275 0.98354 0.93586 0.96347 1.69837 1.30373 1.13859 1.31227 0.86209 0.81757 0.77665 0.80765 1.19491 1.21180 1.20632 1.17928 0.87219 0.82726 0.83299 1.90619 1.13779 1.53747 1.82999 1.20382 0.94215 0.95521 0.96058 1.21978 0.94863 1.02209 0.97916 1.20765 0.99821 0.96689 0.93946 1.19211 0.93425 1.00462 0.99420 1.20544 0.98722 1.01518 0.94761 1.18600 0.92945 0.91086 0.90065 1.85984 1.33710 1.55221 1.48258 1.22761 0.83280 0.97247 0.99104 1.21747 1.01376 0.98468 0.98946 1.21211 1.01008 1.01340 0.95017 0.93234 0.93197 0.93010 0.91999 0.90692 0.92824 0.89972 0.92565 0.83379 0.85652 0.91887 0.92057 0.91578 0.91834 0.92021 0.91768 0.90554 0.91737 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.90 37.15 0.37 -1.70 16 2 C -0.13 -2.49 5.23 -26.73 -0.14 -2.63 16 3 C 0.08 1.62 4.86 -4.04 -0.02 1.60 16 4 N -0.44 -11.15 2.53 -115.92 -0.29 -11.44 16 5 C -0.35 -9.71 9.03 -15.00 -0.14 -9.85 16 6 H 0.08 2.13 7.92 -52.49 -0.42 1.71 16 7 C 0.08 2.16 4.29 -17.45 -0.07 2.08 16 8 N -0.82 -24.42 11.83 55.50 0.66 -23.77 16 9 Si 0.91 21.92 29.61 -169.99 -5.03 16.89 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 13 C 0.50 13.28 6.83 -12.38 -0.08 13.20 16 14 O -0.53 -16.29 14.45 5.29 0.08 -16.21 16 15 C -0.06 -1.26 5.45 -104.98 -0.57 -1.84 16 16 C -0.15 -2.79 7.38 -39.15 -0.29 -3.08 16 17 C -0.09 -1.46 9.67 -39.66 -0.38 -1.84 16 18 C -0.12 -1.94 5.90 -104.38 -0.62 -2.55 16 19 C -0.10 -1.20 9.78 36.01 0.35 -0.85 16 20 C 0.12 2.04 6.65 -39.28 -0.26 1.78 16 21 O -0.32 -4.90 9.16 -19.47 -0.18 -5.08 16 22 C 0.05 0.67 5.46 37.16 0.20 0.88 16 23 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 24 C -0.17 -3.30 8.60 -39.00 -0.34 -3.64 16 25 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.06 1.23 6.98 -51.93 -0.36 0.87 16 29 H 0.07 1.55 8.07 -51.93 -0.42 1.13 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.51 4.02 -51.93 -0.21 1.30 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.15 2.67 3.38 -52.49 -0.18 2.49 16 34 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 37 H 0.07 0.80 7.52 -51.93 -0.39 0.41 16 38 H 0.06 0.87 7.66 -51.93 -0.40 0.47 16 39 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.13 2.61 6.25 -52.49 -0.33 2.28 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -33.38 347.24 -7.60 -40.98 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.46 Total: 2.90 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -1.61 Total: -9.51 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.36 Total: -35.21 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.10 Total: -21.29 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.38 -7.60 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113153537.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.286 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds