Wall clock time and date at job start Tue Mar 31 2020 06:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46824 * 2 1 4 4 N 1.46504 * 109.46857 * 179.97438 * 3 2 1 5 5 C 1.36877 * 119.99918 * 283.28885 * 4 3 2 6 6 H 1.07992 * 120.00024 * 314.90721 * 5 4 3 7 7 C 1.39044 * 119.99613 * 134.90734 * 5 4 3 8 8 N 1.31361 * 120.00476 * 338.82726 * 7 5 4 9 9 Si 1.86803 * 119.99927 * 158.82546 * 7 5 4 10 10 H 1.48504 * 109.46978 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46850 * 119.99933 * 9 7 5 12 12 H 1.48492 * 109.47368 * 240.00186 * 9 7 5 13 13 C 1.34771 * 120.00140 * 103.29529 * 4 3 2 14 14 O 1.21586 * 120.00391 * 186.51106 * 13 4 3 15 15 C 1.47740 * 119.99939 * 6.50506 * 13 4 3 16 16 C 1.39677 * 120.12560 * 323.93322 * 15 13 4 17 17 C 1.37943 * 119.95892 * 180.02562 * 16 15 13 18 18 C 1.38306 * 120.21394 * 359.71782 * 17 16 15 19 19 C 1.50703 * 119.87585 * 180.27643 * 18 17 16 20 20 C 1.38832 * 120.24723 * 0.55411 * 18 17 16 21 21 O 1.35913 * 119.97485 * 179.72012 * 20 18 17 22 22 C 1.42905 * 116.99518 * 179.73081 * 21 20 18 23 23 C 1.52998 * 109.47046 * 180.02562 * 22 21 20 24 24 C 1.38464 * 120.04055 * 359.45276 * 20 18 17 25 25 H 1.09003 * 109.47066 * 60.00019 * 1 2 3 26 26 H 1.09001 * 109.47480 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47286 * 299.99884 * 1 2 3 28 28 H 1.08996 * 109.47335 * 239.99852 * 2 1 3 29 29 H 1.09004 * 109.47267 * 119.99223 * 2 1 3 30 30 H 1.09000 * 109.46968 * 60.00198 * 3 2 1 31 31 H 1.08994 * 109.47228 * 299.99950 * 3 2 1 32 32 H 0.97001 * 120.00049 * 185.03718 * 8 7 5 33 33 H 1.07998 * 120.02265 * 0.03890 * 16 15 13 34 34 H 1.07999 * 119.89335 * 180.02562 * 17 16 15 35 35 H 1.08999 * 109.46990 * 270.27834 * 19 18 17 36 36 H 1.09000 * 109.46820 * 30.27446 * 19 18 17 37 37 H 1.09004 * 109.46961 * 150.27702 * 19 18 17 38 38 H 1.08995 * 109.47226 * 59.99979 * 22 21 20 39 39 H 1.08999 * 109.46831 * 300.00019 * 22 21 20 40 40 H 1.08995 * 109.47419 * 59.99737 * 23 22 21 41 41 H 1.08998 * 109.47013 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.47027 * 299.99539 * 23 22 21 43 43 H 1.07997 * 120.10989 * 180.25249 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1888 1.1703 1.1546 6 1 3.8866 1.6317 2.0830 7 6 5.2726 0.2996 1.1314 8 7 5.3980 -0.5673 0.1524 9 14 6.5506 0.3625 2.4924 10 1 6.1818 1.4184 3.4693 11 1 6.6048 -0.9518 3.1816 12 1 7.8808 0.6705 1.9086 13 6 4.1793 1.7108 -1.1350 14 8 5.3893 1.5954 -1.1653 15 6 3.4482 2.1450 -2.3432 16 6 2.1885 1.6138 -2.6291 17 6 1.5092 2.0212 -3.7584 18 6 2.0688 2.9592 -4.6068 19 6 1.3173 3.4035 -5.8351 20 6 3.3229 3.4888 -4.3340 21 8 3.8701 4.4061 -5.1745 22 6 5.1608 4.9133 -4.8296 23 6 5.6092 5.9265 -5.8847 24 6 4.0140 3.0872 -3.2034 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 6.1125 -1.2229 0.1736 33 1 1.7464 0.8847 -1.9663 34 1 0.5350 1.6101 -3.9782 35 1 1.5732 2.7541 -6.6723 36 1 0.2454 3.3466 -5.6456 37 1 1.5897 4.4312 -6.0759 38 1 5.8751 4.0911 -4.7882 39 1 5.1112 5.4009 -3.8560 40 1 4.8948 6.7487 -5.9257 41 1 6.5939 6.3130 -5.6218 42 1 5.6587 5.4392 -6.8584 43 1 4.9878 3.5014 -2.9880 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113153537.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:56 Heat of formation + Delta-G solvation = -51.671239 kcal Electronic energy + Delta-G solvation = -24009.282342 eV Core-core repulsion = 20633.885748 eV Total energy + Delta-G solvation = -3375.396594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56566 -40.26051 -38.20652 -36.93345 -34.79415 -33.66601 -32.91555 -32.53478 -30.74479 -28.57410 -27.29889 -26.09436 -25.00597 -23.11123 -22.66745 -22.23092 -21.31929 -19.50237 -18.20731 -17.33820 -17.14440 -17.04919 -16.91187 -16.64641 -15.77358 -15.43033 -15.20651 -14.88047 -14.67746 -14.45077 -14.27685 -13.86715 -13.57763 -13.53222 -13.40000 -13.15961 -12.98313 -12.86745 -12.80724 -12.70487 -12.52619 -12.44266 -12.16216 -12.01807 -11.93421 -11.81905 -11.71574 -11.35423 -10.85480 -10.15911 -9.77140 -9.18010 -9.03912 -8.25578 -6.02283 0.06960 0.42244 1.33354 1.41417 1.49536 2.18331 2.22716 2.37594 2.89318 3.03635 3.22527 3.80015 3.90346 3.98314 4.05664 4.12242 4.14784 4.28293 4.31276 4.33044 4.39115 4.57075 4.61736 4.71175 4.79357 4.82379 4.86768 4.88843 4.91313 4.94237 5.09229 5.17443 5.27245 5.29568 5.32366 5.37528 5.43991 5.49996 5.52737 5.66390 5.81325 6.17517 6.37450 6.96382 7.14165 7.59476 8.26241 8.83123 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.005566 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.344442 B = 5029.627122 C = 6590.276969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.125 4.125 3 C 0.077 3.923 4 N -0.451 5.451 5 C -0.370 4.370 6 H 0.084 0.916 7 C 0.027 3.973 8 N -0.861 5.861 9 Si 0.970 3.030 10 H -0.255 1.255 11 H -0.269 1.269 12 H -0.296 1.296 13 C 0.488 3.512 14 O -0.592 6.592 15 C -0.093 4.093 16 C -0.153 4.153 17 C -0.079 4.079 18 C -0.113 4.113 19 C -0.097 4.097 20 C 0.115 3.885 21 O -0.314 6.314 22 C 0.044 3.956 23 C -0.140 4.140 24 C -0.181 4.181 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.260 0.740 33 H 0.152 0.848 34 H 0.174 0.826 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.034 8.242 -10.448 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C -0.045 4.045 4 N -0.170 5.170 5 C -0.498 4.498 6 H 0.101 0.899 7 C -0.181 4.181 8 N -0.495 5.495 9 Si 0.794 3.206 10 H -0.179 1.179 11 H -0.195 1.195 12 H -0.223 1.223 13 C 0.278 3.722 14 O -0.475 6.475 15 C -0.097 4.097 16 C -0.172 4.172 17 C -0.097 4.097 18 C -0.114 4.114 19 C -0.153 4.153 20 C 0.069 3.931 21 O -0.228 6.228 22 C -0.032 4.032 23 C -0.197 4.197 24 C -0.201 4.201 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.069 0.931 33 H 0.169 0.831 34 H 0.191 0.809 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.088 0.912 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.374 8.171 -10.700 16.997 hybrid contribution 1.720 -0.490 1.237 2.175 sum -8.654 7.681 -9.463 14.948 Atomic orbital electron populations 1.21702 0.92405 1.02536 1.02968 1.21705 0.97370 0.96450 1.00789 1.22458 0.81293 0.97629 1.03100 1.43395 1.05058 1.60430 1.08120 1.19307 1.14307 1.27826 0.88325 0.89869 1.26118 1.00071 0.93266 0.98622 1.69952 1.31034 1.15001 1.33542 0.85275 0.78199 0.78692 0.78409 1.17873 1.19472 1.22282 1.18718 0.87037 0.81578 0.84856 1.90549 1.16368 1.56168 1.84420 1.20079 0.96029 0.98182 0.95400 1.22028 0.93638 1.02097 0.99391 1.21219 1.01038 0.95490 0.91914 1.19796 0.92442 0.98880 1.00248 1.20651 0.99970 1.01680 0.93023 1.18778 0.93629 0.91375 0.89286 1.86000 1.34543 1.54592 1.47662 1.22986 0.82175 0.97573 1.00417 1.21753 1.02445 0.97599 0.97869 1.21146 1.00848 1.01851 0.96268 0.90811 0.91835 0.91813 0.93982 0.93880 0.91883 0.87786 0.93060 0.83102 0.80907 0.90562 0.89022 0.91451 0.93186 0.92533 0.90801 0.88749 0.91157 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.90 71.98 0.71 -2.73 16 2 C -0.12 -4.60 5.23 30.59 0.16 -4.44 16 3 C 0.08 3.12 4.86 86.38 0.42 3.54 16 4 N -0.45 -23.90 2.53 -638.94 -1.62 -25.52 16 5 C -0.37 -21.26 9.03 84.10 0.76 -20.50 16 6 H 0.08 4.57 7.92 -2.91 -0.02 4.54 16 7 C 0.03 1.58 4.29 84.96 0.36 1.94 16 8 N -0.86 -54.08 11.83 21.68 0.26 -53.82 16 9 Si 0.97 46.75 29.61 68.60 2.03 48.78 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 13 C 0.49 27.35 6.83 86.76 0.59 27.94 16 14 O -0.59 -38.74 14.45 -3.99 -0.06 -38.79 16 15 C -0.09 -4.20 5.45 -20.10 -0.11 -4.31 16 16 C -0.15 -5.46 7.38 22.55 0.17 -5.30 16 17 C -0.08 -2.14 9.67 22.22 0.21 -1.92 16 18 C -0.11 -3.13 5.90 -19.70 -0.12 -3.25 16 19 C -0.10 -1.87 9.78 71.24 0.70 -1.17 16 20 C 0.11 3.85 6.65 22.47 0.15 4.00 16 21 O -0.31 -9.31 9.16 -92.57 -0.85 -10.15 16 22 C 0.04 1.14 5.46 71.98 0.39 1.53 16 23 C -0.14 -2.49 10.28 71.98 0.74 -1.75 16 24 C -0.18 -7.46 8.60 22.64 0.19 -7.26 16 25 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.04 1.70 6.98 -2.39 -0.02 1.68 16 29 H 0.04 1.83 8.07 -2.38 -0.02 1.81 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.10 3.72 4.02 -2.39 -0.01 3.71 16 32 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.15 5.24 3.38 -2.91 -0.01 5.23 16 34 H 0.17 3.08 8.06 -2.91 -0.02 3.05 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 37 H 0.07 1.33 7.52 -2.39 -0.02 1.31 16 38 H 0.05 1.43 7.66 -2.39 -0.02 1.41 16 39 H 0.06 1.52 7.66 -2.39 -0.02 1.50 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 43 H 0.11 4.88 6.25 -2.91 -0.02 4.86 16 Total: -1.00 -78.78 347.24 6.10 -72.67 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 1.00 Total: 20.51 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 5.34 Total: -13.68 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -1.36 Total: -79.34 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -0.91 Total: -48.95 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -78.78 6.10 -72.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113153537.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.002 kcal (2) G-P(sol) polarization free energy of solvation -78.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds