Wall clock time and date at job start Tue Mar 31 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53010 * 109.46998 * 2 1 4 4 H 1.09002 * 109.46817 * 54.99983 * 3 2 1 5 5 C 1.52999 * 109.46998 * 175.00258 * 3 2 1 6 6 N 1.46502 * 109.46785 * 295.00096 * 3 2 1 7 7 C 1.46498 * 119.99900 * 299.99916 * 6 3 2 8 8 C 1.34776 * 119.99690 * 120.00193 * 6 3 2 9 9 O 1.21278 * 120.00419 * 359.97438 * 8 6 3 10 10 C 1.50698 * 119.99695 * 179.97438 * 8 6 3 11 11 C 1.50699 * 109.47246 * 179.97438 * 10 8 6 12 12 C 1.38306 * 119.93202 * 269.73157 * 11 10 8 13 13 C 1.38099 * 120.06700 * 179.72403 * 12 11 10 14 14 C 1.38875 * 119.93125 * 0.56418 * 13 12 11 15 15 O 1.35753 * 120.06769 * 179.68417 * 14 13 12 16 16 C 1.34824 * 116.99985 * 174.48816 * 15 14 13 17 17 H 1.08000 * 120.00073 * 5.05776 * 16 15 14 18 18 C 1.38653 * 120.00311 * 185.05485 * 16 15 14 19 19 N 1.31562 * 119.99866 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00498 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47073 * 90.00200 * 20 18 16 22 22 H 1.48498 * 109.47462 * 210.00581 * 20 18 16 23 23 H 1.48500 * 109.46765 * 330.00116 * 20 18 16 24 24 C 1.38879 * 119.86393 * 359.70711 * 14 13 12 25 25 C 1.38100 * 119.92926 * 0.02562 * 24 14 13 26 26 H 1.08999 * 109.47030 * 299.99667 * 1 2 3 27 27 H 1.08993 * 109.47256 * 59.99922 * 1 2 3 28 28 H 1.09001 * 109.46816 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47030 * 240.00333 * 2 1 3 30 30 H 1.09003 * 109.47291 * 120.00028 * 2 1 3 31 31 H 1.09001 * 109.46606 * 299.99865 * 5 3 2 32 32 H 1.08999 * 109.47140 * 59.99895 * 5 3 2 33 33 H 1.08998 * 109.47091 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.47002 * 269.99863 * 7 6 3 35 35 H 1.08998 * 109.46951 * 150.00764 * 7 6 3 36 36 H 1.08999 * 109.47487 * 30.00142 * 7 6 3 37 37 H 1.09000 * 109.47293 * 299.99939 * 10 8 6 38 38 H 1.09002 * 109.47519 * 59.99955 * 10 8 6 39 39 H 1.08004 * 119.96185 * 359.97395 * 12 11 10 40 40 H 1.08003 * 120.03148 * 180.26991 * 13 12 11 41 41 H 0.96995 * 119.99880 * 179.97438 * 19 18 16 42 42 H 1.07994 * 120.03313 * 179.97438 * 24 14 13 43 43 H 1.07994 * 119.96343 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4444 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 2.1138 1.5589 -2.5337 8 6 0.8713 3.1955 -1.2241 9 8 0.4889 3.6411 -0.1629 10 6 0.4730 3.8695 -2.5118 11 6 -0.3943 5.0635 -2.2065 12 6 -1.7677 4.9181 -2.1332 13 6 -2.5647 6.0093 -1.8480 14 6 -1.9867 7.2558 -1.6462 15 8 -2.7680 8.3315 -1.3720 16 6 -2.1380 9.4858 -1.0746 17 1 -1.0618 9.5464 -1.1419 18 6 -2.8716 10.5950 -0.6825 19 7 -4.1826 10.5211 -0.6001 20 14 -1.9986 12.1941 -0.2697 21 1 -1.8730 13.0205 -1.4971 22 1 -2.7824 12.9373 0.7494 23 1 -0.6465 11.8957 0.2667 24 6 -0.6077 7.3996 -1.7260 25 6 0.1844 6.3036 -2.0061 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8532 0.9571 1.0571 32 1 3.9994 0.9054 -0.7162 33 1 3.9281 2.4721 0.1261 34 1 3.0652 2.0195 -2.7999 35 1 1.3761 1.7767 -3.3060 36 1 2.2436 0.4800 -2.4490 37 1 1.3672 4.1958 -3.0428 38 1 -0.0824 3.1669 -3.1331 39 1 -2.2170 3.9494 -2.2952 40 1 -3.6369 5.8942 -1.7866 41 1 -4.6958 11.2970 -0.3254 42 1 -0.1553 8.3678 -1.5700 43 1 1.2568 6.4147 -2.0679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171839827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:59 Heat of formation + Delta-G solvation = -67.415979 kcal Electronic energy + Delta-G solvation = -22961.857105 eV Core-core repulsion = 19585.777768 eV Total energy + Delta-G solvation = -3376.079337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27339 -40.55085 -38.44971 -37.47472 -34.50424 -34.19369 -32.56365 -31.78634 -30.86115 -28.22789 -27.66554 -26.98609 -24.67411 -23.64415 -22.90626 -21.55037 -19.91813 -19.78847 -18.83193 -18.21016 -17.01656 -16.84195 -16.37750 -16.23428 -15.94466 -15.51386 -15.23855 -14.79413 -14.76311 -14.58088 -14.40965 -14.23890 -14.05838 -13.76901 -13.59127 -13.24728 -13.06400 -12.94780 -12.80604 -12.62838 -12.47218 -12.28978 -12.22656 -12.13121 -12.04188 -11.88543 -11.59210 -11.18655 -10.85442 -10.66416 -9.77295 -9.53787 -8.90054 -8.47947 -6.16229 0.60538 0.67023 1.33139 1.42970 1.51387 1.75305 2.13400 2.17438 2.83149 3.15448 3.51790 3.71037 3.87890 4.03164 4.10330 4.13184 4.18027 4.20109 4.36831 4.46349 4.50884 4.58248 4.62932 4.66473 4.72830 4.76899 4.81286 4.91066 5.01062 5.03749 5.08383 5.11343 5.13944 5.22238 5.28987 5.30094 5.41019 5.55446 5.70865 5.75760 5.77556 6.02274 6.21644 6.50780 6.96534 7.33700 7.77886 8.75673 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028314 B = 0.003038 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.681979 B = 9214.245350 C = 9430.262542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.126 3.874 4 H 0.061 0.939 5 C -0.152 4.152 6 N -0.609 5.609 7 C 0.066 3.934 8 C 0.507 3.493 9 O -0.584 6.584 10 C -0.076 4.076 11 C -0.144 4.144 12 C -0.058 4.058 13 C -0.206 4.206 14 C 0.112 3.888 15 O -0.233 6.233 16 C -0.415 4.415 17 H 0.100 0.900 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.020 2.980 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.255 1.255 24 C -0.243 4.243 25 C -0.061 4.061 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.145 0.855 40 H 0.112 0.888 41 H 0.273 0.727 42 H 0.117 0.883 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.311 -22.555 -5.307 28.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C 0.022 3.978 4 H 0.080 0.920 5 C -0.210 4.210 6 N -0.342 5.342 7 C -0.076 4.076 8 C 0.297 3.703 9 O -0.464 6.464 10 C -0.115 4.115 11 C -0.145 4.145 12 C -0.076 4.076 13 C -0.225 4.225 14 C 0.062 3.938 15 O -0.140 6.140 16 C -0.491 4.491 17 H 0.117 0.883 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.839 3.161 21 H -0.184 1.184 22 H -0.195 1.195 23 H -0.179 1.179 24 C -0.263 4.263 25 C -0.079 4.079 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.163 0.837 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 16.713 -22.196 -4.703 28.180 hybrid contribution -0.298 1.197 0.563 1.356 sum 16.416 -20.999 -4.140 26.973 Atomic orbital electron populations 1.21705 0.96609 1.01617 1.00740 1.21855 0.95464 0.94819 1.03997 1.21169 0.95943 0.93874 0.86782 0.92036 1.22059 0.93477 1.01858 1.03613 1.48019 1.50142 1.27556 1.08494 1.22099 1.01101 1.00922 0.83465 1.21193 0.77485 0.80182 0.91486 1.90727 1.56030 1.65246 1.34360 1.20563 1.01204 0.94873 0.94852 1.19281 0.93496 0.94483 1.07277 1.20852 0.93185 0.97156 0.96417 1.20434 1.00157 0.90930 1.10973 1.19913 0.91166 0.88515 0.94179 1.83935 1.35138 1.17064 1.77900 1.21825 0.93342 0.86694 1.47267 0.88316 1.26621 0.96501 1.02958 0.96027 1.70190 1.07067 1.32254 1.46516 0.84576 0.77926 0.74816 0.78792 1.18407 1.19467 1.17919 1.21221 0.93110 1.00609 1.11320 1.20910 0.99361 0.91638 0.96002 0.95020 0.93780 0.91327 0.89328 0.89792 0.90538 0.90193 0.93910 0.91219 0.89314 0.89115 0.85726 0.85404 0.83740 0.86975 0.91808 0.86491 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.80 71.98 0.71 -1.83 16 2 C -0.12 -1.57 5.36 30.60 0.16 -1.41 16 3 C 0.13 2.23 2.64 44.99 0.12 2.35 16 4 H 0.06 1.61 6.90 -2.39 -0.02 1.59 16 5 C -0.15 -1.98 9.19 71.98 0.66 -1.31 16 6 N -0.61 -10.80 2.21 -822.58 -1.82 -12.62 16 7 C 0.07 0.53 9.30 127.77 1.19 1.72 16 8 C 0.51 13.29 7.67 87.66 0.67 13.97 16 9 O -0.58 -22.40 15.36 -3.02 -0.05 -22.44 16 10 C -0.08 -1.64 4.38 29.10 0.13 -1.51 16 11 C -0.14 -4.83 4.38 -19.83 -0.09 -4.92 16 12 C -0.06 -2.13 9.69 22.25 0.22 -1.92 16 13 C -0.21 -9.54 9.99 22.39 0.22 -9.31 16 14 C 0.11 6.03 6.65 22.58 0.15 6.18 16 15 O -0.23 -14.88 9.76 -22.72 -0.22 -15.10 16 16 C -0.42 -25.46 9.49 67.92 0.64 -24.82 16 17 H 0.10 5.60 5.20 -2.91 -0.02 5.59 16 18 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 19 N -0.92 -58.65 13.67 21.61 0.30 -58.35 16 20 Si 1.02 44.65 29.55 68.60 2.03 46.68 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 24 C -0.24 -11.53 9.17 22.39 0.21 -11.32 16 25 C -0.06 -2.31 9.69 22.25 0.22 -2.09 16 26 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.04 0.83 7.75 -2.39 -0.02 0.81 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 0.73 6.47 -2.39 -0.02 0.72 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.68 7.67 -2.39 -0.02 0.66 16 33 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.09 0.49 6.44 -2.39 -0.02 0.48 16 36 H 0.09 0.41 6.34 -2.39 -0.02 0.40 16 37 H 0.12 1.95 8.05 -2.39 -0.02 1.93 16 38 H 0.13 1.91 7.34 -2.39 -0.02 1.89 16 39 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 40 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 41 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 42 H 0.12 5.61 5.64 -2.91 -0.02 5.59 16 43 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -83.79 353.92 6.90 -76.89 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 1.00 Total: 22.14 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 5.67 Total: -37.18 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -1.53 Total: -70.98 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.27 Total: -37.55 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -83.79 6.90 -76.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171839827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.472 kcal (2) G-P(sol) polarization free energy of solvation -83.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds