Wall clock time and date at job start Tue Mar 31 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47020 * 2 1 4 4 H 1.09006 * 109.47597 * 305.00411 * 3 2 1 5 5 C 1.53004 * 109.47093 * 185.00379 * 3 2 1 6 6 N 1.46500 * 109.47405 * 65.00272 * 3 2 1 7 7 C 1.46500 * 119.99738 * 59.99684 * 6 3 2 8 8 C 1.34775 * 120.00561 * 240.00022 * 6 3 2 9 9 O 1.21284 * 119.99434 * 359.97438 * 8 6 3 10 10 C 1.50691 * 120.00400 * 179.97438 * 8 6 3 11 11 C 1.50700 * 109.47561 * 180.02562 * 10 8 6 12 12 C 1.38309 * 119.92846 * 269.73376 * 11 10 8 13 13 C 1.38102 * 120.06248 * 179.72370 * 12 11 10 14 14 C 1.38870 * 119.93423 * 0.56248 * 13 12 11 15 15 O 1.35754 * 120.07331 * 179.68517 * 14 13 12 16 16 C 1.34828 * 117.00244 * 174.48868 * 15 14 13 17 17 H 1.07990 * 120.00078 * 5.05460 * 16 15 14 18 18 C 1.38663 * 119.99598 * 185.05669 * 16 15 14 19 19 N 1.31553 * 120.00083 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99666 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47096 * 89.99950 * 20 18 16 22 22 H 1.48498 * 109.46997 * 209.99943 * 20 18 16 23 23 H 1.48503 * 109.46968 * 330.00040 * 20 18 16 24 24 C 1.38879 * 119.86210 * 359.70768 * 14 13 12 25 25 C 1.38103 * 119.93424 * 359.97438 * 24 14 13 26 26 H 1.09001 * 109.46866 * 299.99741 * 1 2 3 27 27 H 1.09001 * 109.47582 * 59.99938 * 1 2 3 28 28 H 1.09000 * 109.47611 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47135 * 120.00356 * 2 1 3 30 30 H 1.09001 * 109.46866 * 240.00259 * 2 1 3 31 31 H 1.08997 * 109.47088 * 59.99972 * 5 3 2 32 32 H 1.09000 * 109.46796 * 179.97438 * 5 3 2 33 33 H 1.08996 * 109.47128 * 299.99702 * 5 3 2 34 34 H 1.08996 * 109.47154 * 90.00172 * 7 6 3 35 35 H 1.09000 * 109.47210 * 210.00541 * 7 6 3 36 36 H 1.09002 * 109.47100 * 330.00440 * 7 6 3 37 37 H 1.08995 * 109.47202 * 300.00270 * 10 8 6 38 38 H 1.09002 * 109.47127 * 59.99974 * 10 8 6 39 39 H 1.07993 * 119.96347 * 359.96639 * 12 11 10 40 40 H 1.08005 * 120.02714 * 180.26929 * 13 12 11 41 41 H 0.97000 * 120.00061 * 179.97438 * 19 18 16 42 42 H 1.08010 * 120.03528 * 179.97438 * 24 14 13 43 43 H 1.07989 * 119.96679 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 1.6525 2.0975 1.2518 7 6 2.1140 1.5589 2.5337 8 6 0.8714 3.1955 1.2243 9 8 0.4897 3.6415 0.1630 10 6 0.4724 3.8688 2.5120 11 6 -0.3947 5.0630 2.2068 12 6 0.1837 6.3042 2.0123 13 6 -0.6078 7.3992 1.7269 14 6 -1.9867 7.2556 1.6466 15 8 -2.7680 8.3314 1.3725 16 6 -4.0849 8.1025 1.1961 17 1 -4.4871 7.1130 1.3550 18 6 -4.9229 9.1378 0.8104 19 7 -4.4329 10.3432 0.6163 20 14 -6.7473 8.8206 0.5653 21 1 -7.4656 9.0475 1.8451 22 1 -7.2758 9.7453 -0.4695 23 1 -6.9509 7.4169 0.1254 24 6 -2.5650 6.0090 1.8479 25 6 -1.7676 4.9164 2.1266 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8531 0.9570 -1.0572 32 1 3.9281 2.4720 -0.1263 33 1 3.9995 0.9053 0.7159 34 1 3.0654 2.0193 2.7998 35 1 1.3763 1.7765 3.3060 36 1 2.2437 0.4799 2.4489 37 1 -0.0833 3.1659 3.1325 38 1 1.3663 4.1949 3.0437 39 1 1.2557 6.4162 2.0799 40 1 -0.1551 8.3674 1.5708 41 1 -5.0190 11.0673 0.3462 42 1 -3.6372 5.8942 1.7866 43 1 -2.2166 3.9468 2.2828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171839830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:02 Heat of formation + Delta-G solvation = -46.120839 kcal Electronic energy + Delta-G solvation = -22973.425318 eV Core-core repulsion = 19598.269408 eV Total energy + Delta-G solvation = -3375.155910 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.15217 -38.85225 -37.01382 -36.15542 -33.46065 -32.34976 -31.18006 -30.11260 -30.04539 -27.05769 -26.59164 -25.09986 -23.90610 -21.91123 -21.66068 -20.27755 -18.94774 -17.91711 -17.22927 -16.89136 -16.06463 -15.84749 -14.68901 -14.61691 -14.42070 -13.93429 -13.91521 -13.77426 -13.56393 -13.49302 -13.17024 -13.08153 -12.72379 -12.62049 -12.40472 -12.38507 -11.93407 -11.79959 -11.48279 -11.35302 -11.21697 -11.18532 -10.90821 -10.75498 -10.68652 -10.55278 -10.38288 -9.56336 -9.26326 -8.76499 -8.69309 -8.08179 -7.09430 -6.39260 -3.97696 2.31410 2.32792 2.81763 3.01954 3.16585 3.18123 3.22640 4.01838 4.42432 4.61033 4.80143 4.85646 4.88309 4.98994 5.14370 5.15826 5.19493 5.26075 5.31902 5.35771 5.38071 5.42944 5.44349 5.59537 5.71394 5.74210 5.76572 5.79237 5.90862 5.92257 5.97729 6.13407 6.28114 6.48525 6.53584 6.77047 6.98211 7.11841 7.30374 7.39696 7.43989 7.51475 7.90827 8.06250 8.36323 9.06584 9.77790 10.79052 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026352 B = 0.003130 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.301620 B = 8944.569255 C = 9418.141144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C 0.132 3.868 4 H 0.101 0.899 5 C -0.159 4.159 6 N -0.619 5.619 7 C 0.077 3.923 8 C 0.511 3.489 9 O -0.520 6.520 10 C -0.078 4.078 11 C -0.169 4.169 12 C -0.060 4.060 13 C -0.191 4.191 14 C 0.156 3.844 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.232 4.232 25 C -0.057 4.057 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.269 0.731 42 H 0.126 0.874 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.172 -20.185 3.720 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.028 3.972 4 H 0.119 0.881 5 C -0.218 4.218 6 N -0.355 5.355 7 C -0.066 4.066 8 C 0.300 3.700 9 O -0.394 6.394 10 C -0.118 4.118 11 C -0.170 4.170 12 C -0.078 4.078 13 C -0.210 4.210 14 C 0.103 3.897 15 O -0.083 6.083 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.251 4.251 25 C -0.075 4.075 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.909 -19.449 3.040 23.541 hybrid contribution -0.848 -0.321 -0.054 0.908 sum 12.061 -19.770 2.986 23.351 Atomic orbital electron populations 1.21710 0.95279 1.01152 1.02540 1.21883 0.96794 0.96141 1.02165 1.21094 0.94670 0.93243 0.88165 0.88111 1.22119 0.95291 1.02389 1.01953 1.47980 1.51888 1.28970 1.06676 1.21734 0.99979 0.99537 0.85349 1.21052 0.77367 0.79453 0.92178 1.90728 1.53200 1.63128 1.32317 1.20440 1.00268 0.96437 0.94640 1.18663 0.93206 0.93130 1.12026 1.20393 0.97850 0.91817 0.97759 1.20150 0.91048 0.99193 1.10652 1.19369 0.90946 0.87316 0.92077 1.83976 1.19662 1.28321 1.76303 1.21327 0.80084 0.97537 1.47739 0.89110 1.25279 1.00283 0.94585 0.96398 1.70040 1.36039 1.00504 1.43353 0.85721 0.80707 0.78637 0.78420 1.19918 1.20277 1.19201 1.21102 1.00447 0.92934 1.10644 1.20492 0.92686 0.97069 0.97261 0.92711 0.92480 0.92967 0.91806 0.91071 0.91653 0.92239 0.92512 0.92806 0.90875 0.91230 0.89176 0.89124 0.87460 0.86576 0.92089 0.85625 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.80 37.16 0.36 -1.07 16 2 C -0.13 -1.06 5.36 -26.73 -0.14 -1.20 16 3 C 0.13 1.31 2.64 -67.93 -0.18 1.14 16 4 H 0.10 1.30 6.90 -51.93 -0.36 0.94 16 5 C -0.16 -1.26 9.19 37.16 0.34 -0.92 16 6 N -0.62 -6.56 2.21 -173.94 -0.39 -6.95 16 7 C 0.08 0.53 9.30 59.85 0.56 1.08 16 8 C 0.51 7.39 7.67 -10.99 -0.08 7.31 16 9 O -0.52 -10.06 15.36 5.55 0.09 -9.98 16 10 C -0.08 -1.03 4.38 -29.04 -0.13 -1.15 16 11 C -0.17 -3.04 4.38 -104.57 -0.46 -3.50 16 12 C -0.06 -1.14 9.69 -39.61 -0.38 -1.53 16 13 C -0.19 -4.29 9.99 -39.40 -0.39 -4.68 16 14 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 15 O -0.18 -5.31 9.76 0.04 0.00 -5.31 16 16 C -0.39 -11.28 9.49 30.89 0.29 -10.99 16 17 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 18 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 19 N -0.86 -25.98 13.67 55.48 0.76 -25.22 16 20 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 C -0.23 -5.33 9.17 -39.39 -0.36 -5.69 16 25 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 26 H 0.05 0.59 7.75 -51.93 -0.40 0.19 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.43 6.47 -51.93 -0.34 0.10 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.44 6.44 -51.93 -0.33 0.10 16 36 H 0.07 0.37 6.34 -51.93 -0.33 0.04 16 37 H 0.09 0.97 7.34 -51.93 -0.38 0.59 16 38 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.12 2.51 8.06 -52.48 -0.42 2.08 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.13 2.88 5.64 -52.48 -0.30 2.58 16 43 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 353.91 15.07 5.33 5.33 Total: -1.00 -34.34 353.91 -7.01 -41.35 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.47 Total: 2.71 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -1.32 Total: -18.00 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.37 Total: -32.17 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.09 Total: -15.28 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.34 -7.01 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171839830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.768 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds