Wall clock time and date at job start Tue Mar 31 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47020 * 2 1 4 4 H 1.09006 * 109.47597 * 305.00411 * 3 2 1 5 5 C 1.53004 * 109.47093 * 185.00379 * 3 2 1 6 6 N 1.46500 * 109.47405 * 65.00272 * 3 2 1 7 7 C 1.46500 * 119.99738 * 59.99684 * 6 3 2 8 8 C 1.34775 * 120.00561 * 240.00022 * 6 3 2 9 9 O 1.21284 * 119.99434 * 359.97438 * 8 6 3 10 10 C 1.50691 * 120.00400 * 179.97438 * 8 6 3 11 11 C 1.50700 * 109.47561 * 180.02562 * 10 8 6 12 12 C 1.38309 * 119.92846 * 269.73376 * 11 10 8 13 13 C 1.38102 * 120.06248 * 179.72370 * 12 11 10 14 14 C 1.38870 * 119.93423 * 0.56248 * 13 12 11 15 15 O 1.35754 * 120.07331 * 179.68517 * 14 13 12 16 16 C 1.34828 * 117.00244 * 174.48868 * 15 14 13 17 17 H 1.07990 * 120.00078 * 5.05460 * 16 15 14 18 18 C 1.38663 * 119.99598 * 185.05669 * 16 15 14 19 19 N 1.31553 * 120.00083 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99666 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47096 * 89.99950 * 20 18 16 22 22 H 1.48498 * 109.46997 * 209.99943 * 20 18 16 23 23 H 1.48503 * 109.46968 * 330.00040 * 20 18 16 24 24 C 1.38879 * 119.86210 * 359.70768 * 14 13 12 25 25 C 1.38103 * 119.93424 * 359.97438 * 24 14 13 26 26 H 1.09001 * 109.46866 * 299.99741 * 1 2 3 27 27 H 1.09001 * 109.47582 * 59.99938 * 1 2 3 28 28 H 1.09000 * 109.47611 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47135 * 120.00356 * 2 1 3 30 30 H 1.09001 * 109.46866 * 240.00259 * 2 1 3 31 31 H 1.08997 * 109.47088 * 59.99972 * 5 3 2 32 32 H 1.09000 * 109.46796 * 179.97438 * 5 3 2 33 33 H 1.08996 * 109.47128 * 299.99702 * 5 3 2 34 34 H 1.08996 * 109.47154 * 90.00172 * 7 6 3 35 35 H 1.09000 * 109.47210 * 210.00541 * 7 6 3 36 36 H 1.09002 * 109.47100 * 330.00440 * 7 6 3 37 37 H 1.08995 * 109.47202 * 300.00270 * 10 8 6 38 38 H 1.09002 * 109.47127 * 59.99974 * 10 8 6 39 39 H 1.07993 * 119.96347 * 359.96639 * 12 11 10 40 40 H 1.08005 * 120.02714 * 180.26929 * 13 12 11 41 41 H 0.97000 * 120.00061 * 179.97438 * 19 18 16 42 42 H 1.08010 * 120.03528 * 179.97438 * 24 14 13 43 43 H 1.07989 * 119.96679 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 1.6525 2.0975 1.2518 7 6 2.1140 1.5589 2.5337 8 6 0.8714 3.1955 1.2243 9 8 0.4897 3.6415 0.1630 10 6 0.4724 3.8688 2.5120 11 6 -0.3947 5.0630 2.2068 12 6 0.1837 6.3042 2.0123 13 6 -0.6078 7.3992 1.7269 14 6 -1.9867 7.2556 1.6466 15 8 -2.7680 8.3314 1.3725 16 6 -4.0849 8.1025 1.1961 17 1 -4.4871 7.1130 1.3550 18 6 -4.9229 9.1378 0.8104 19 7 -4.4329 10.3432 0.6163 20 14 -6.7473 8.8206 0.5653 21 1 -7.4656 9.0475 1.8451 22 1 -7.2758 9.7453 -0.4695 23 1 -6.9509 7.4169 0.1254 24 6 -2.5650 6.0090 1.8479 25 6 -1.7676 4.9164 2.1266 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8531 0.9570 -1.0572 32 1 3.9281 2.4720 -0.1263 33 1 3.9995 0.9053 0.7159 34 1 3.0654 2.0193 2.7998 35 1 1.3763 1.7765 3.3060 36 1 2.2437 0.4799 2.4489 37 1 -0.0833 3.1659 3.1325 38 1 1.3663 4.1949 3.0437 39 1 1.2557 6.4162 2.0799 40 1 -0.1551 8.3674 1.5708 41 1 -5.0190 11.0673 0.3462 42 1 -3.6372 5.8942 1.7866 43 1 -2.2166 3.9468 2.2828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171839830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:02 Heat of formation + Delta-G solvation = -67.420831 kcal Electronic energy + Delta-G solvation = -22974.348955 eV Core-core repulsion = 19598.269408 eV Total energy + Delta-G solvation = -3376.079547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27310 -40.55029 -38.44960 -37.47443 -34.50524 -34.19543 -32.56601 -31.78357 -30.86337 -28.22695 -27.66565 -26.98565 -24.67636 -23.64429 -22.90752 -21.55255 -19.90943 -19.79383 -18.83130 -18.21121 -17.02341 -16.85132 -16.39407 -16.17521 -15.97294 -15.51125 -15.16358 -15.00125 -14.66018 -14.57366 -14.39790 -14.17790 -14.10219 -13.78604 -13.59008 -13.25924 -13.06423 -12.94772 -12.78618 -12.62899 -12.47098 -12.30741 -12.21682 -12.13179 -12.04543 -11.88852 -11.59378 -11.18648 -10.85466 -10.66456 -9.77256 -9.53740 -8.90064 -8.47968 -6.16230 0.60549 0.67041 1.33104 1.42936 1.51369 1.75301 2.13424 2.17436 2.83153 3.15454 3.51801 3.71017 3.87909 4.03279 4.09403 4.13337 4.18810 4.19482 4.36549 4.46415 4.50765 4.58423 4.62780 4.67366 4.72294 4.75395 4.82233 4.91089 5.01024 5.03456 5.08191 5.10931 5.14303 5.21835 5.29452 5.29823 5.40562 5.55457 5.70842 5.75661 5.77663 6.02247 6.21658 6.50785 6.96503 7.33717 7.77904 8.75658 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026352 B = 0.003130 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.301620 B = 8944.569255 C = 9418.141144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.126 3.874 4 H 0.061 0.939 5 C -0.152 4.152 6 N -0.609 5.609 7 C 0.066 3.934 8 C 0.507 3.493 9 O -0.584 6.584 10 C -0.076 4.076 11 C -0.144 4.144 12 C -0.058 4.058 13 C -0.206 4.206 14 C 0.112 3.888 15 O -0.234 6.234 16 C -0.415 4.415 17 H 0.100 0.900 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.020 2.980 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.255 1.255 24 C -0.243 4.243 25 C -0.061 4.061 26 H 0.042 0.958 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.112 0.888 41 H 0.273 0.727 42 H 0.117 0.883 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.846 -24.313 5.455 29.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C 0.022 3.978 4 H 0.080 0.920 5 C -0.210 4.210 6 N -0.342 5.342 7 C -0.076 4.076 8 C 0.297 3.703 9 O -0.464 6.464 10 C -0.115 4.115 11 C -0.145 4.145 12 C -0.076 4.076 13 C -0.225 4.225 14 C 0.062 3.938 15 O -0.140 6.140 16 C -0.491 4.491 17 H 0.117 0.883 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.839 3.161 21 H -0.184 1.184 22 H -0.195 1.195 23 H -0.179 1.179 24 C -0.263 4.263 25 C -0.079 4.079 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.163 0.837 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.656 -23.663 4.825 28.250 hybrid contribution -1.040 0.672 -0.516 1.342 sum 13.616 -22.991 4.309 27.066 Atomic orbital electron populations 1.21706 0.96674 1.01597 1.00692 1.21851 0.95398 0.94879 1.04009 1.21167 0.95990 0.93831 0.86779 0.92036 1.22057 0.93411 1.01904 1.03607 1.48019 1.50148 1.27547 1.08495 1.22099 1.01119 1.00916 0.83455 1.21194 0.77469 0.80199 0.91488 1.90729 1.56033 1.65255 1.34356 1.20561 1.01233 0.94859 0.94838 1.19282 0.93337 0.94624 1.07299 1.20857 0.99441 0.91165 0.96171 1.20435 0.90436 1.00540 1.11096 1.19911 0.91980 0.87770 0.94111 1.83936 1.20263 1.30526 1.79315 1.21827 0.80582 0.98354 1.48386 0.88312 1.26619 1.05795 0.94019 0.95661 1.70187 1.38247 1.01806 1.45775 0.84578 0.73540 0.79053 0.78953 1.18401 1.19463 1.17919 1.21222 1.00610 0.93274 1.11144 1.20904 0.93455 0.97274 0.96239 0.93864 0.95040 0.91335 0.89326 0.89768 0.90548 0.93832 0.90196 0.91111 0.89380 0.89157 0.85651 0.85481 0.83734 0.86973 0.91804 0.86495 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.80 71.98 0.71 -1.88 16 2 C -0.12 -1.59 5.36 30.59 0.16 -1.43 16 3 C 0.13 2.23 2.64 44.99 0.12 2.35 16 4 H 0.06 1.61 6.90 -2.38 -0.02 1.59 16 5 C -0.15 -1.95 9.19 71.98 0.66 -1.29 16 6 N -0.61 -10.80 2.21 -822.60 -1.82 -12.62 16 7 C 0.07 0.53 9.30 127.77 1.19 1.72 16 8 C 0.51 13.30 7.67 87.65 0.67 13.97 16 9 O -0.58 -22.40 15.36 -3.04 -0.05 -22.45 16 10 C -0.08 -1.64 4.38 29.10 0.13 -1.51 16 11 C -0.14 -4.83 4.38 -19.83 -0.09 -4.92 16 12 C -0.06 -2.15 9.69 22.25 0.22 -1.93 16 13 C -0.21 -9.55 9.99 22.39 0.22 -9.33 16 14 C 0.11 6.03 6.65 22.57 0.15 6.18 16 15 O -0.23 -14.89 9.76 -22.76 -0.22 -15.11 16 16 C -0.42 -25.47 9.49 67.92 0.64 -24.83 16 17 H 0.10 5.60 5.20 -2.92 -0.02 5.59 16 18 C -0.02 -1.41 5.49 84.84 0.47 -0.94 16 19 N -0.92 -58.64 13.67 21.62 0.30 -58.34 16 20 Si 1.02 44.64 29.55 68.60 2.03 46.66 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 24 C -0.24 -11.52 9.17 22.39 0.21 -11.31 16 25 C -0.06 -2.29 9.69 22.25 0.22 -2.08 16 26 H 0.04 0.83 7.75 -2.39 -0.02 0.81 16 27 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 0.74 6.47 -2.39 -0.02 0.73 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 0.67 7.67 -2.39 -0.02 0.65 16 34 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.09 0.50 6.44 -2.39 -0.02 0.49 16 36 H 0.09 0.42 6.34 -2.39 -0.02 0.40 16 37 H 0.13 1.93 7.34 -2.39 -0.02 1.92 16 38 H 0.13 1.93 8.05 -2.39 -0.02 1.91 16 39 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 40 H 0.11 5.13 8.06 -2.91 -0.02 5.10 16 41 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 42 H 0.12 5.60 5.64 -2.91 -0.02 5.59 16 43 H 0.14 4.18 8.06 -2.92 -0.02 4.16 16 Total: -1.00 -83.79 353.91 6.90 -76.89 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 1.00 Total: 22.19 kcal Atomic # 6 Polarization: -42.89 SS G_CDS: 5.67 Total: -37.22 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: -1.53 Total: -70.97 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -0.27 Total: -37.56 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -83.79 6.90 -76.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171839830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.469 kcal (2) G-P(sol) polarization free energy of solvation -83.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds