Wall clock time and date at job start Tue Mar 31 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47299 * 2 1 4 4 H 1.09000 * 109.46832 * 304.99964 * 3 2 1 5 5 C 1.52999 * 109.47162 * 185.00438 * 3 2 1 6 6 O 1.42893 * 109.47138 * 64.99971 * 3 2 1 7 7 C 1.35708 * 117.00326 * 204.11767 * 6 3 2 8 8 C 1.38991 * 119.90825 * 354.60767 * 7 6 3 9 9 C 1.37712 * 120.08895 * 180.02562 * 8 7 6 10 10 C 1.39728 * 119.90844 * 359.97438 * 9 8 7 11 11 C 1.47608 * 120.08917 * 180.02562 * 10 9 8 12 12 O 1.21584 * 119.99644 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00062 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99889 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47167 * 325.00171 * 14 13 11 16 16 C 1.53007 * 109.47280 * 84.99554 * 14 13 11 17 17 C 1.50699 * 109.47374 * 204.99622 * 14 13 11 18 18 H 1.08002 * 119.99798 * 354.78608 * 17 14 13 19 19 C 1.37871 * 119.99917 * 174.77872 * 17 14 13 20 20 N 1.31517 * 119.99716 * 163.06327 * 19 17 14 21 21 Si 1.86797 * 120.00536 * 343.33995 * 19 17 14 22 22 H 1.48505 * 109.47065 * 269.72418 * 21 19 17 23 23 H 1.48498 * 109.47019 * 29.72142 * 21 19 17 24 24 H 1.48499 * 109.47540 * 149.72319 * 21 19 17 25 25 C 1.39732 * 119.82566 * 0.27422 * 10 9 8 26 26 C 1.37706 * 119.91196 * 359.44717 * 25 10 9 27 27 H 1.08999 * 109.46923 * 300.00178 * 1 2 3 28 28 H 1.08998 * 109.46920 * 59.99587 * 1 2 3 29 29 H 1.08998 * 109.47312 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47300 * 240.00087 * 2 1 3 31 31 H 1.09002 * 109.47491 * 119.99951 * 2 1 3 32 32 H 1.08998 * 109.47167 * 180.02562 * 5 3 2 33 33 H 1.09008 * 109.46939 * 299.99822 * 5 3 2 34 34 H 1.08997 * 109.47544 * 59.99709 * 5 3 2 35 35 H 1.08000 * 119.95688 * 0.02562 * 8 7 6 36 36 H 1.07995 * 120.04158 * 180.02562 * 9 8 7 37 37 H 0.96998 * 120.00438 * 359.97438 * 13 11 10 38 38 H 1.08994 * 109.46672 * 54.37462 * 16 14 13 39 39 H 1.08993 * 109.47040 * 174.37559 * 16 14 13 40 40 H 1.09000 * 109.46925 * 294.37582 * 16 14 13 41 41 H 0.97001 * 120.00310 * 355.19279 * 20 19 17 42 42 H 1.08000 * 120.04819 * 179.72238 * 25 10 9 43 43 H 1.07995 * 119.95900 * 180.24981 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1258 6 8 1.6620 2.0814 1.2210 7 6 1.5703 3.4353 1.2053 8 6 1.9473 4.1423 0.0696 9 6 1.8562 5.5163 0.0497 10 6 1.3836 6.1995 1.1733 11 6 1.2838 7.6721 1.1562 12 8 1.6135 8.2922 0.1637 13 7 0.8282 8.3293 2.2411 14 6 0.7286 9.7908 2.2239 15 1 1.5500 10.2040 1.6384 16 6 -0.6038 10.2039 1.5954 17 6 0.8030 10.3160 3.6344 18 1 0.8285 9.6277 4.4663 19 6 0.8386 11.6752 3.8629 20 7 0.5701 12.1479 5.0604 21 14 1.2608 12.8459 2.4698 22 1 2.7286 13.0696 2.4389 23 1 0.8226 12.2574 1.1788 24 1 0.5671 14.1412 2.6842 25 6 1.0105 5.4853 2.3149 26 6 1.0991 4.1112 2.3247 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9283 2.4720 -0.1254 33 1 3.9995 0.9053 0.7160 34 1 3.8532 0.9570 -1.0572 35 1 2.3121 3.6135 -0.7986 36 1 2.1489 6.0649 -0.8333 37 1 0.5654 7.8346 3.0330 38 1 -1.4216 9.7101 2.1202 39 1 -0.7225 11.2846 1.6728 40 1 -0.6166 9.9113 0.5455 41 1 0.2792 11.5478 5.7648 42 1 0.6490 6.0101 3.1869 43 1 0.8072 3.5582 3.2053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175945657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:30 Heat of formation + Delta-G solvation = -66.072403 kcal Electronic energy + Delta-G solvation = -22731.239346 eV Core-core repulsion = 19355.218271 eV Total energy + Delta-G solvation = -3376.021075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.60087 -39.23081 -37.33585 -34.97909 -34.47394 -32.53350 -31.28777 -30.65512 -30.11390 -28.91995 -24.88532 -24.53101 -23.43071 -23.13836 -21.17303 -20.72217 -19.51872 -18.65753 -18.00789 -16.83243 -16.12264 -15.64485 -15.22054 -15.09756 -14.68707 -14.27196 -14.01579 -13.95185 -13.64634 -13.53300 -13.35683 -13.06429 -12.76596 -12.47396 -12.34748 -12.21586 -12.13854 -11.97300 -11.58397 -11.47524 -11.35543 -11.23478 -10.89196 -10.75098 -10.53551 -10.11885 -9.68350 -9.28539 -9.12713 -9.04157 -8.38359 -8.35048 -8.05957 -6.56684 -4.20994 1.00956 1.29324 2.90481 3.20808 3.42654 3.46357 3.61517 3.98298 4.09121 4.25361 4.45207 4.47135 4.58713 4.71536 4.75680 4.89411 5.06319 5.16430 5.17148 5.18195 5.21645 5.28490 5.41074 5.44537 5.54234 5.55817 5.70078 5.75981 5.90343 5.93757 6.15625 6.23782 6.39250 6.44444 6.55884 6.59692 6.68903 6.98051 7.23440 7.31346 7.40254 7.67629 8.24928 8.48607 8.71016 8.97890 9.47319 10.82699 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036465 B = 0.002901 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.669202 B = 9648.537769 C = 9892.643129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.075 0.925 5 C -0.183 4.183 6 O -0.306 6.306 7 C 0.148 3.852 8 C -0.222 4.222 9 C -0.023 4.023 10 C -0.162 4.162 11 C 0.546 3.454 12 O -0.557 6.557 13 N -0.697 5.697 14 C 0.241 3.759 15 H 0.044 0.956 16 C -0.154 4.154 17 C -0.618 4.618 18 H 0.062 0.938 19 C 0.041 3.959 20 N -0.898 5.898 21 Si 1.038 2.962 22 H -0.284 1.284 23 H -0.267 1.267 24 H -0.284 1.284 25 C -0.047 4.047 26 C -0.161 4.161 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.392 0.608 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.030 0.970 41 H 0.270 0.730 42 H 0.135 0.865 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 -24.059 -9.741 25.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.093 0.907 5 C -0.240 4.240 6 O -0.220 6.220 7 C 0.102 3.898 8 C -0.240 4.240 9 C -0.042 4.042 10 C -0.166 4.166 11 C 0.333 3.667 12 O -0.438 6.438 13 N -0.345 5.345 14 C 0.138 3.862 15 H 0.062 0.938 16 C -0.212 4.212 17 C -0.656 4.656 18 H 0.080 0.920 19 C -0.166 4.166 20 N -0.531 5.531 21 Si 0.865 3.135 22 H -0.210 1.210 23 H -0.192 1.192 24 H -0.210 1.210 25 C -0.066 4.066 26 C -0.180 4.180 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.226 0.774 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.153 0.847 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.865 -22.112 -10.602 24.593 hybrid contribution -0.294 -1.837 0.704 1.989 sum 1.571 -23.949 -9.898 25.962 Atomic orbital electron populations 1.21771 0.95033 1.01901 1.02541 1.21632 0.96928 0.93791 1.03200 1.22547 0.95159 0.93996 0.86048 0.90671 1.22409 0.95129 1.03480 1.03015 1.86064 1.83391 1.16704 1.35832 1.19190 0.93935 0.82357 0.94279 1.21227 1.09046 0.94991 0.98771 1.21064 0.92709 0.92880 0.97548 1.20140 1.06567 0.94183 0.95697 1.18181 0.78117 0.86514 0.83904 1.90710 1.50943 1.68940 1.33167 1.46236 1.63607 1.09748 1.14893 1.19087 0.93860 0.75368 0.97905 0.93848 1.22425 0.99635 1.01057 0.98117 1.22080 1.58393 0.94414 0.90679 0.92011 1.25677 0.93063 0.96812 1.01009 1.70830 1.40280 1.38574 1.03399 0.84175 0.77411 0.75948 0.75956 1.21008 1.19248 1.20971 1.21210 0.95050 0.93103 0.97198 1.20327 1.05935 0.93694 0.98018 0.91851 0.92751 0.92426 0.90052 0.90745 0.91482 0.91352 0.90956 0.84988 0.84491 0.77418 0.93768 0.92466 0.95099 0.92039 0.84738 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.81 37.16 0.36 -0.67 16 2 C -0.12 -0.74 5.64 -26.73 -0.15 -0.89 16 3 C 0.08 0.62 2.23 -26.73 -0.06 0.56 16 4 H 0.08 0.57 6.35 -51.93 -0.33 0.24 16 5 C -0.18 -1.28 9.15 37.16 0.34 -0.94 16 6 O -0.31 -3.28 9.33 -18.83 -0.18 -3.45 16 7 C 0.15 1.78 6.60 -39.02 -0.26 1.52 16 8 C -0.22 -2.63 8.18 -39.49 -0.32 -2.95 16 9 C -0.02 -0.33 9.58 -39.22 -0.38 -0.71 16 10 C -0.16 -2.63 5.87 -104.96 -0.62 -3.25 16 11 C 0.55 11.13 7.73 -12.44 -0.10 11.04 16 12 O -0.56 -13.11 16.00 5.29 0.08 -13.02 16 13 N -0.70 -14.65 5.02 -55.95 -0.28 -14.93 16 14 C 0.24 5.92 2.11 -69.08 -0.15 5.77 16 15 H 0.04 1.15 6.17 -51.93 -0.32 0.83 16 16 C -0.15 -3.54 8.80 37.16 0.33 -3.21 16 17 C -0.62 -16.86 9.01 -34.44 -0.31 -17.17 16 18 H 0.06 1.75 7.96 -52.49 -0.42 1.33 16 19 C 0.04 1.16 5.31 -17.82 -0.09 1.06 16 20 N -0.90 -26.85 13.70 55.43 0.76 -26.09 16 21 Si 1.04 25.21 26.20 -169.99 -4.45 20.75 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.16 5.60 56.52 0.32 -5.85 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.05 -0.64 9.53 -39.22 -0.37 -1.02 16 26 C -0.16 -1.97 9.97 -39.49 -0.39 -2.37 16 27 H 0.06 0.51 7.82 -51.93 -0.41 0.10 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.53 6.81 -51.93 -0.35 0.18 16 33 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.13 1.24 5.37 -52.49 -0.28 0.96 16 36 H 0.14 1.96 7.64 -52.49 -0.40 1.56 16 37 H 0.39 7.27 6.55 -40.82 -0.27 7.00 16 38 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.32 5.15 -51.93 -0.27 1.05 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.27 7.96 8.73 -40.82 -0.36 7.60 16 42 H 0.13 1.67 6.40 -52.49 -0.34 1.33 16 43 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 347.72 15.07 5.24 5.24 Total: -1.00 -32.11 347.72 -7.42 -39.53 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.42 Total: 5.19 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -2.17 Total: -13.22 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.48 Total: -41.02 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.09 Total: -16.47 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -4.45 Total: 20.75 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.11 -7.42 -39.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175945657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.545 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds