Wall clock time and date at job start Tue Mar 31 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47299 * 2 1 4 4 H 1.09000 * 109.46832 * 304.99964 * 3 2 1 5 5 C 1.52999 * 109.47162 * 185.00438 * 3 2 1 6 6 O 1.42893 * 109.47138 * 64.99971 * 3 2 1 7 7 C 1.35708 * 117.00326 * 204.11767 * 6 3 2 8 8 C 1.38991 * 119.90825 * 354.60767 * 7 6 3 9 9 C 1.37712 * 120.08895 * 180.02562 * 8 7 6 10 10 C 1.39728 * 119.90844 * 359.97438 * 9 8 7 11 11 C 1.47608 * 120.08917 * 180.02562 * 10 9 8 12 12 O 1.21584 * 119.99644 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00062 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99889 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47167 * 325.00171 * 14 13 11 16 16 C 1.53007 * 109.47280 * 84.99554 * 14 13 11 17 17 C 1.50699 * 109.47374 * 204.99622 * 14 13 11 18 18 H 1.08002 * 119.99798 * 354.78608 * 17 14 13 19 19 C 1.37871 * 119.99917 * 174.77872 * 17 14 13 20 20 N 1.31517 * 119.99716 * 163.06327 * 19 17 14 21 21 Si 1.86797 * 120.00536 * 343.33995 * 19 17 14 22 22 H 1.48505 * 109.47065 * 269.72418 * 21 19 17 23 23 H 1.48498 * 109.47019 * 29.72142 * 21 19 17 24 24 H 1.48499 * 109.47540 * 149.72319 * 21 19 17 25 25 C 1.39732 * 119.82566 * 0.27422 * 10 9 8 26 26 C 1.37706 * 119.91196 * 359.44717 * 25 10 9 27 27 H 1.08999 * 109.46923 * 300.00178 * 1 2 3 28 28 H 1.08998 * 109.46920 * 59.99587 * 1 2 3 29 29 H 1.08998 * 109.47312 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47300 * 240.00087 * 2 1 3 31 31 H 1.09002 * 109.47491 * 119.99951 * 2 1 3 32 32 H 1.08998 * 109.47167 * 180.02562 * 5 3 2 33 33 H 1.09008 * 109.46939 * 299.99822 * 5 3 2 34 34 H 1.08997 * 109.47544 * 59.99709 * 5 3 2 35 35 H 1.08000 * 119.95688 * 0.02562 * 8 7 6 36 36 H 1.07995 * 120.04158 * 180.02562 * 9 8 7 37 37 H 0.96998 * 120.00438 * 359.97438 * 13 11 10 38 38 H 1.08994 * 109.46672 * 54.37462 * 16 14 13 39 39 H 1.08993 * 109.47040 * 174.37559 * 16 14 13 40 40 H 1.09000 * 109.46925 * 294.37582 * 16 14 13 41 41 H 0.97001 * 120.00310 * 355.19279 * 20 19 17 42 42 H 1.08000 * 120.04819 * 179.72238 * 25 10 9 43 43 H 1.07995 * 119.95900 * 180.24981 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1258 6 8 1.6620 2.0814 1.2210 7 6 1.5703 3.4353 1.2053 8 6 1.9473 4.1423 0.0696 9 6 1.8562 5.5163 0.0497 10 6 1.3836 6.1995 1.1733 11 6 1.2838 7.6721 1.1562 12 8 1.6135 8.2922 0.1637 13 7 0.8282 8.3293 2.2411 14 6 0.7286 9.7908 2.2239 15 1 1.5500 10.2040 1.6384 16 6 -0.6038 10.2039 1.5954 17 6 0.8030 10.3160 3.6344 18 1 0.8285 9.6277 4.4663 19 6 0.8386 11.6752 3.8629 20 7 0.5701 12.1479 5.0604 21 14 1.2608 12.8459 2.4698 22 1 2.7286 13.0696 2.4389 23 1 0.8226 12.2574 1.1788 24 1 0.5671 14.1412 2.6842 25 6 1.0105 5.4853 2.3149 26 6 1.0991 4.1112 2.3247 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9283 2.4720 -0.1254 33 1 3.9995 0.9053 0.7160 34 1 3.8532 0.9570 -1.0572 35 1 2.3121 3.6135 -0.7986 36 1 2.1489 6.0649 -0.8333 37 1 0.5654 7.8346 3.0330 38 1 -1.4216 9.7101 2.1202 39 1 -0.7225 11.2846 1.6728 40 1 -0.6166 9.9113 0.5455 41 1 0.2792 11.5478 5.7648 42 1 0.6490 6.0101 3.1869 43 1 0.8072 3.5582 3.2053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175945657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:29 Heat of formation + Delta-G solvation = -86.141933 kcal Electronic energy + Delta-G solvation = -22732.109626 eV Core-core repulsion = 19355.218271 eV Total energy + Delta-G solvation = -3376.891355 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.59371 -40.62263 -38.45069 -36.84078 -35.15634 -34.52419 -32.45534 -31.96157 -30.78900 -30.36088 -26.90277 -25.41008 -24.41171 -24.12860 -22.49673 -21.86838 -21.08350 -20.00869 -19.41400 -18.38798 -17.37511 -16.79268 -16.27320 -16.17986 -15.93362 -15.68078 -15.26242 -14.90527 -14.83039 -14.63493 -14.49278 -14.37175 -14.21468 -13.96573 -13.60283 -13.41534 -13.31901 -13.18175 -12.81548 -12.63572 -12.48179 -12.09506 -12.00420 -11.98285 -11.62478 -11.55246 -11.47914 -11.14509 -10.94577 -10.54777 -10.14377 -9.98854 -9.26246 -8.80753 -6.45517 -0.12872 0.27733 1.48625 1.49589 1.71601 1.87881 2.12750 2.41255 2.43838 2.82990 2.99799 3.65316 3.75528 3.78583 3.84157 3.95931 4.06698 4.16662 4.29294 4.41577 4.47559 4.49538 4.62431 4.67730 4.69921 4.75714 4.76985 4.92332 4.96934 5.03671 5.08297 5.10817 5.19296 5.21618 5.24810 5.33019 5.40890 5.42776 5.56355 5.62514 5.65826 6.00225 6.37103 6.50735 6.79017 7.25024 7.37206 8.58089 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036465 B = 0.002901 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.669202 B = 9648.537769 C = 9892.643129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C 0.069 3.931 4 H 0.082 0.918 5 C -0.181 4.181 6 O -0.311 6.311 7 C 0.159 3.841 8 C -0.214 4.214 9 C -0.027 4.027 10 C -0.190 4.190 11 C 0.547 3.453 12 O -0.594 6.594 13 N -0.699 5.699 14 C 0.243 3.757 15 H 0.025 0.975 16 C -0.148 4.148 17 C -0.614 4.614 18 H 0.042 0.958 19 C -0.003 4.003 20 N -0.926 5.926 21 Si 1.073 2.927 22 H -0.276 1.276 23 H -0.251 1.251 24 H -0.277 1.277 25 C -0.044 4.044 26 C -0.163 4.163 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.159 0.841 36 H 0.132 0.868 37 H 0.402 0.598 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.037 0.963 41 H 0.260 0.740 42 H 0.143 0.857 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -26.445 -11.175 28.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C 0.013 3.987 4 H 0.100 0.900 5 C -0.239 4.239 6 O -0.224 6.224 7 C 0.112 3.888 8 C -0.232 4.232 9 C -0.046 4.046 10 C -0.193 4.193 11 C 0.336 3.664 12 O -0.478 6.478 13 N -0.348 5.348 14 C 0.139 3.861 15 H 0.043 0.957 16 C -0.207 4.207 17 C -0.652 4.652 18 H 0.060 0.940 19 C -0.204 4.204 20 N -0.561 5.561 21 Si 0.894 3.106 22 H -0.202 1.202 23 H -0.175 1.175 24 H -0.203 1.203 25 C -0.062 4.062 26 C -0.181 4.181 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.176 0.824 36 H 0.150 0.850 37 H 0.238 0.762 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.160 0.840 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.058 -24.549 -12.022 27.412 hybrid contribution -0.328 -1.337 1.163 1.803 sum 1.729 -25.886 -10.859 28.125 Atomic orbital electron populations 1.21782 0.95471 1.02412 1.01723 1.21669 0.96486 0.92757 1.04290 1.22880 0.95980 0.94742 0.85056 0.90048 1.22410 0.94201 1.03061 1.04180 1.86088 1.82972 1.15756 1.37609 1.19323 0.92382 0.83161 0.93965 1.21402 1.08204 0.93890 0.99718 1.21104 0.92752 0.93924 0.96865 1.19857 1.10128 0.91574 0.97762 1.18747 0.76657 0.88243 0.82775 1.90672 1.52529 1.70213 1.34366 1.46069 1.64252 1.08492 1.15955 1.18829 0.94068 0.77482 0.95765 0.95730 1.22320 0.98857 1.00990 0.98484 1.22225 1.57182 0.94203 0.91608 0.94016 1.26828 0.92641 0.98817 1.02093 1.70928 1.42502 1.38580 1.04078 0.83725 0.77739 0.74734 0.74372 1.20229 1.17496 1.20269 1.21269 0.94586 0.93783 0.96588 1.20544 1.05486 0.93131 0.98986 0.93569 0.92633 0.91342 0.87749 0.90846 0.92538 0.91554 0.88718 0.82384 0.84978 0.76166 0.92877 0.92682 0.94391 0.93108 0.83964 0.82785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.81 71.98 0.71 -1.02 16 2 C -0.11 -1.09 5.64 30.60 0.17 -0.92 16 3 C 0.07 0.88 2.23 30.60 0.07 0.95 16 4 H 0.08 0.96 6.35 -2.39 -0.02 0.95 16 5 C -0.18 -1.98 9.15 71.98 0.66 -1.33 16 6 O -0.31 -5.84 9.33 -90.29 -0.84 -6.68 16 7 C 0.16 3.43 6.60 22.63 0.15 3.58 16 8 C -0.21 -4.62 8.18 22.33 0.18 -4.43 16 9 C -0.03 -0.76 9.58 22.51 0.22 -0.55 16 10 C -0.19 -6.07 5.87 -20.08 -0.12 -6.19 16 11 C 0.55 22.39 7.73 86.72 0.67 23.06 16 12 O -0.59 -28.30 16.00 -3.98 -0.06 -28.36 16 13 N -0.70 -29.51 5.02 -449.19 -2.25 -31.76 16 14 C 0.24 11.96 2.11 44.25 0.09 12.05 16 15 H 0.02 1.32 6.17 -2.39 -0.01 1.30 16 16 C -0.15 -6.71 8.80 71.98 0.63 -6.08 16 17 C -0.61 -33.92 9.01 25.60 0.23 -33.69 16 18 H 0.04 2.42 7.96 -2.91 -0.02 2.40 16 19 C 0.00 -0.16 5.31 84.65 0.45 0.29 16 20 N -0.93 -56.20 13.70 21.45 0.29 -55.90 16 21 Si 1.07 50.72 26.20 68.60 1.80 52.52 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.25 -11.11 5.60 99.48 0.56 -10.55 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 C -0.04 -1.14 9.53 22.51 0.21 -0.93 16 26 C -0.16 -3.66 9.97 22.33 0.22 -3.44 16 27 H 0.05 0.66 7.82 -2.39 -0.02 0.64 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.75 6.81 -2.39 -0.02 0.73 16 33 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.16 2.51 5.37 -2.91 -0.02 2.50 16 36 H 0.13 3.75 7.64 -2.91 -0.02 3.73 16 37 H 0.40 14.98 6.55 -92.71 -0.61 14.38 16 38 H 0.05 2.26 8.14 -2.39 -0.02 2.25 16 39 H 0.05 2.49 5.15 -2.39 -0.01 2.47 16 40 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.26 15.74 8.73 -92.71 -0.81 14.93 16 42 H 0.14 3.40 6.40 -2.91 -0.02 3.38 16 43 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -69.31 347.72 3.70 -65.61 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.22 Total: 23.23 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 4.55 Total: -18.64 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -1.96 Total: -87.67 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.91 Total: -35.05 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 1.80 Total: 52.52 kcal Total: -69.31 3.70 -65.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175945657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.534 kcal (2) G-P(sol) polarization free energy of solvation -69.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds