Wall clock time and date at job start Tue Mar 31 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46776 * 2 1 4 4 H 1.08994 * 109.47138 * 54.99634 * 3 2 1 5 5 C 1.52993 * 109.46971 * 174.99887 * 3 2 1 6 6 O 1.42896 * 109.46933 * 294.99840 * 3 2 1 7 7 C 1.35710 * 117.00121 * 155.58557 * 6 3 2 8 8 C 1.38998 * 119.90892 * 5.59847 * 7 6 3 9 9 C 1.37710 * 120.08897 * 179.97438 * 8 7 6 10 10 C 1.39731 * 119.91177 * 0.02562 * 9 8 7 11 11 C 1.47595 * 120.08906 * 179.97438 * 10 9 8 12 12 O 1.21584 * 120.00281 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99888 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99929 * 180.02562 * 13 11 10 15 15 H 1.09007 * 109.47174 * 35.00627 * 14 13 11 16 16 C 1.52999 * 109.47155 * 275.00467 * 14 13 11 17 17 C 1.50695 * 109.47150 * 155.00316 * 14 13 11 18 18 H 1.07996 * 120.00118 * 35.04477 * 17 14 13 19 19 C 1.37884 * 120.00137 * 215.32773 * 17 14 13 20 20 N 1.31509 * 119.99949 * 181.50866 * 19 17 14 21 21 Si 1.86801 * 119.99759 * 1.50287 * 19 17 14 22 22 H 1.48499 * 109.46666 * 84.94180 * 21 19 17 23 23 H 1.48497 * 109.46863 * 204.93776 * 21 19 17 24 24 H 1.48496 * 109.47220 * 324.94384 * 21 19 17 25 25 C 1.39735 * 119.82153 * 0.27458 * 10 9 8 26 26 C 1.37707 * 119.91260 * 359.42469 * 25 10 9 27 27 H 1.08995 * 109.47434 * 299.99684 * 1 2 3 28 28 H 1.08997 * 109.47147 * 60.00158 * 1 2 3 29 29 H 1.09003 * 109.46464 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47434 * 240.00315 * 2 1 3 31 31 H 1.08997 * 109.47147 * 119.99842 * 2 1 3 32 32 H 1.09001 * 109.47394 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.47497 * 299.99864 * 5 3 2 34 34 H 1.09004 * 109.47380 * 59.99735 * 5 3 2 35 35 H 1.08000 * 119.95677 * 0.02562 * 8 7 6 36 36 H 1.08000 * 120.04290 * 179.97438 * 9 8 7 37 37 H 0.96995 * 120.00305 * 0.02562 * 13 11 10 38 38 H 1.09001 * 109.47083 * 64.92227 * 16 14 13 39 39 H 1.09006 * 109.46510 * 184.91756 * 16 14 13 40 40 H 1.08993 * 109.47057 * 304.91738 * 16 14 13 41 41 H 0.97000 * 120.00067 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.04217 * 179.72281 * 25 10 9 43 43 H 1.07999 * 119.95931 * 180.27928 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5647 1.4445 0.1257 6 8 1.6619 2.0814 -1.2210 7 6 1.5640 3.4348 -1.2037 8 6 1.9392 4.1424 -0.0676 9 6 1.8419 5.5158 -0.0462 10 6 1.3647 6.1982 -1.1683 11 6 1.2583 7.6702 -1.1494 12 8 1.5864 8.2908 -0.1567 13 7 0.7983 8.3265 -2.2330 14 6 0.6931 9.7876 -2.2145 15 1 1.5140 10.2036 -1.6302 16 6 -0.6398 10.1951 -1.5834 17 6 0.7631 10.3142 -3.6247 18 1 0.3249 9.7496 -4.4343 19 6 1.3918 11.5141 -3.8822 20 7 1.4269 11.9882 -5.1083 21 14 2.1933 12.4663 -2.4892 22 1 3.5695 11.9544 -2.2674 23 1 2.2523 13.9070 -2.8443 24 1 1.3953 12.2944 -1.2487 25 6 0.9827 5.4827 -2.3062 26 6 1.0888 4.1099 -2.3220 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.9280 2.4721 0.1262 33 1 3.8532 0.9572 1.0571 34 1 3.9994 0.9054 -0.7160 35 1 2.3083 3.6143 0.7992 36 1 2.1332 6.0648 0.8371 37 1 0.5368 7.8315 -3.0251 38 1 -0.6546 9.8904 -0.5370 39 1 -0.7569 11.2769 -1.6486 40 1 -1.4573 9.7084 -2.1152 41 1 1.8689 12.8324 -5.2894 42 1 0.6091 6.0062 -3.1740 43 1 0.7980 3.5565 -3.2027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175945671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:33 Heat of formation + Delta-G solvation = -67.155950 kcal Electronic energy + Delta-G solvation = -22742.160124 eV Core-core repulsion = 19366.092063 eV Total energy + Delta-G solvation = -3376.068061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56475 -39.19162 -37.29929 -34.89923 -34.44707 -32.43520 -31.26970 -30.68208 -30.09075 -28.92805 -25.30425 -24.54483 -23.41723 -23.12106 -21.15141 -20.73091 -19.53346 -18.61801 -17.80344 -16.40644 -16.11998 -15.61746 -15.16885 -15.05330 -14.76746 -14.22697 -14.12872 -13.96355 -13.67479 -13.51160 -13.36986 -13.05987 -12.64460 -12.49177 -12.38229 -12.21506 -12.16161 -11.94879 -11.47744 -11.41704 -11.21339 -11.12216 -10.87585 -10.81110 -10.71697 -10.53083 -9.88004 -9.23046 -9.16951 -9.08660 -8.72338 -8.31593 -7.99401 -6.22589 -4.26593 1.04968 1.33317 2.93507 3.24078 3.28511 3.35303 3.42906 4.00245 4.13493 4.27656 4.33763 4.49475 4.61170 4.74811 4.79377 4.91750 5.08777 5.11849 5.18983 5.20908 5.27440 5.34380 5.45166 5.47638 5.56064 5.59161 5.72434 5.78352 5.92281 5.97621 6.19401 6.26631 6.35038 6.46653 6.56302 6.63370 6.69272 6.95469 7.19612 7.27356 7.39780 7.55969 8.14963 8.57794 8.77621 8.98403 9.39390 10.89107 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033106 B = 0.002979 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.556687 B = 9398.122072 C = 9547.158670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.075 0.925 5 C -0.183 4.183 6 O -0.306 6.306 7 C 0.148 3.852 8 C -0.222 4.222 9 C -0.024 4.024 10 C -0.162 4.162 11 C 0.545 3.455 12 O -0.560 6.560 13 N -0.698 5.698 14 C 0.231 3.769 15 H 0.050 0.950 16 C -0.148 4.148 17 C -0.531 4.531 18 H 0.079 0.921 19 C 0.081 3.919 20 N -0.889 5.889 21 Si 0.875 3.125 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.260 1.260 25 C -0.046 4.046 26 C -0.161 4.161 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.392 0.608 38 H 0.029 0.971 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.268 0.732 42 H 0.137 0.863 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.155 -23.273 9.517 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.023 3.977 4 H 0.093 0.907 5 C -0.240 4.240 6 O -0.220 6.220 7 C 0.102 3.898 8 C -0.241 4.241 9 C -0.043 4.043 10 C -0.166 4.166 11 C 0.332 3.668 12 O -0.441 6.441 13 N -0.346 5.346 14 C 0.129 3.871 15 H 0.068 0.932 16 C -0.207 4.207 17 C -0.569 4.569 18 H 0.097 0.903 19 C -0.123 4.123 20 N -0.526 5.526 21 Si 0.701 3.299 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.184 1.184 25 C -0.065 4.065 26 C -0.180 4.180 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.227 0.773 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.154 0.846 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.405 -22.766 9.911 24.833 hybrid contribution 0.457 0.404 0.368 0.713 sum 0.862 -22.362 10.280 24.626 Atomic orbital electron populations 1.21771 0.95038 1.01884 1.02543 1.21631 0.96924 0.93820 1.03183 1.22539 0.95143 0.93980 0.86078 0.90683 1.22406 0.95151 1.03475 1.02988 1.86064 1.83414 1.16774 1.35744 1.19195 0.94004 0.82342 0.94288 1.21219 1.09070 0.95001 0.98785 1.21063 0.92802 0.92875 0.97548 1.20156 1.06417 0.94236 0.95754 1.18225 0.78121 0.86505 0.83963 1.90705 1.51222 1.68923 1.33248 1.46582 1.63378 1.09778 1.14899 1.19122 0.94335 0.76161 0.97480 0.93202 1.22235 0.99369 1.01021 0.98095 1.21007 1.37908 1.06497 0.91457 0.90303 1.24938 0.94769 0.97100 0.95541 1.69875 1.42861 1.20508 1.19322 0.86888 0.80829 0.79023 0.83146 1.19835 1.21191 1.18420 1.21231 0.94971 0.93073 0.97208 1.20332 1.05858 0.93766 0.98000 0.92757 0.91836 0.92446 0.90745 0.90084 0.91486 0.90997 0.91347 0.85056 0.84567 0.77320 0.95163 0.92593 0.93594 0.92234 0.84562 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.81 37.16 0.36 -0.68 16 2 C -0.12 -0.75 5.64 -26.73 -0.15 -0.90 16 3 C 0.08 0.63 2.23 -26.73 -0.06 0.57 16 4 H 0.08 0.58 6.34 -51.93 -0.33 0.25 16 5 C -0.18 -1.30 9.15 37.15 0.34 -0.96 16 6 O -0.31 -3.31 9.33 -18.83 -0.18 -3.48 16 7 C 0.15 1.79 6.60 -39.02 -0.26 1.53 16 8 C -0.22 -2.67 8.19 -39.49 -0.32 -2.99 16 9 C -0.02 -0.35 9.58 -39.22 -0.38 -0.72 16 10 C -0.16 -2.64 5.87 -104.96 -0.62 -3.26 16 11 C 0.55 11.12 7.73 -12.44 -0.10 11.02 16 12 O -0.56 -13.24 16.00 5.29 0.08 -13.16 16 13 N -0.70 -14.52 5.02 -55.96 -0.28 -14.80 16 14 C 0.23 5.60 2.18 -69.08 -0.15 5.45 16 15 H 0.05 1.32 4.86 -51.92 -0.25 1.07 16 16 C -0.15 -3.30 9.46 37.16 0.35 -2.95 16 17 C -0.53 -14.35 9.05 -34.44 -0.31 -14.66 16 18 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 19 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 20 N -0.89 -26.27 13.96 55.43 0.77 -25.49 16 21 Si 0.87 21.75 26.86 -169.99 -4.57 17.18 16 22 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.26 -6.35 6.94 56.52 0.39 -5.96 16 25 C -0.05 -0.63 9.53 -39.22 -0.37 -1.00 16 26 C -0.16 -1.98 9.97 -39.49 -0.39 -2.37 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.51 7.82 -51.93 -0.41 0.11 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.55 6.83 -51.93 -0.35 0.19 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.13 1.26 5.37 -52.49 -0.28 0.98 16 36 H 0.14 1.98 7.64 -52.49 -0.40 1.58 16 37 H 0.39 7.14 6.61 -40.82 -0.27 6.87 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 40 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.14 1.67 6.40 -52.48 -0.34 1.33 16 43 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -32.01 352.31 -7.43 -39.44 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.42 Total: 4.76 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -2.15 Total: -9.75 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.49 Total: -40.29 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.09 Total: -16.64 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.57 Total: 17.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.01 -7.43 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175945671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.720 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds