Wall clock time and date at job start Tue Mar 31 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46776 * 2 1 4 4 H 1.08994 * 109.47138 * 54.99634 * 3 2 1 5 5 C 1.52993 * 109.46971 * 174.99887 * 3 2 1 6 6 O 1.42896 * 109.46933 * 294.99840 * 3 2 1 7 7 C 1.35710 * 117.00121 * 155.58557 * 6 3 2 8 8 C 1.38998 * 119.90892 * 5.59847 * 7 6 3 9 9 C 1.37710 * 120.08897 * 179.97438 * 8 7 6 10 10 C 1.39731 * 119.91177 * 0.02562 * 9 8 7 11 11 C 1.47595 * 120.08906 * 179.97438 * 10 9 8 12 12 O 1.21584 * 120.00281 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99888 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99929 * 180.02562 * 13 11 10 15 15 H 1.09007 * 109.47174 * 35.00627 * 14 13 11 16 16 C 1.52999 * 109.47155 * 275.00467 * 14 13 11 17 17 C 1.50695 * 109.47150 * 155.00316 * 14 13 11 18 18 H 1.07996 * 120.00118 * 35.04477 * 17 14 13 19 19 C 1.37884 * 120.00137 * 215.32773 * 17 14 13 20 20 N 1.31509 * 119.99949 * 181.50866 * 19 17 14 21 21 Si 1.86801 * 119.99759 * 1.50287 * 19 17 14 22 22 H 1.48499 * 109.46666 * 84.94180 * 21 19 17 23 23 H 1.48497 * 109.46863 * 204.93776 * 21 19 17 24 24 H 1.48496 * 109.47220 * 324.94384 * 21 19 17 25 25 C 1.39735 * 119.82153 * 0.27458 * 10 9 8 26 26 C 1.37707 * 119.91260 * 359.42469 * 25 10 9 27 27 H 1.08995 * 109.47434 * 299.99684 * 1 2 3 28 28 H 1.08997 * 109.47147 * 60.00158 * 1 2 3 29 29 H 1.09003 * 109.46464 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47434 * 240.00315 * 2 1 3 31 31 H 1.08997 * 109.47147 * 119.99842 * 2 1 3 32 32 H 1.09001 * 109.47394 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.47497 * 299.99864 * 5 3 2 34 34 H 1.09004 * 109.47380 * 59.99735 * 5 3 2 35 35 H 1.08000 * 119.95677 * 0.02562 * 8 7 6 36 36 H 1.08000 * 120.04290 * 179.97438 * 9 8 7 37 37 H 0.96995 * 120.00305 * 0.02562 * 13 11 10 38 38 H 1.09001 * 109.47083 * 64.92227 * 16 14 13 39 39 H 1.09006 * 109.46510 * 184.91756 * 16 14 13 40 40 H 1.08993 * 109.47057 * 304.91738 * 16 14 13 41 41 H 0.97000 * 120.00067 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.04217 * 179.72281 * 25 10 9 43 43 H 1.07999 * 119.95931 * 180.27928 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5647 1.4445 0.1257 6 8 1.6619 2.0814 -1.2210 7 6 1.5640 3.4348 -1.2037 8 6 1.9392 4.1424 -0.0676 9 6 1.8419 5.5158 -0.0462 10 6 1.3647 6.1982 -1.1683 11 6 1.2583 7.6702 -1.1494 12 8 1.5864 8.2908 -0.1567 13 7 0.7983 8.3265 -2.2330 14 6 0.6931 9.7876 -2.2145 15 1 1.5140 10.2036 -1.6302 16 6 -0.6398 10.1951 -1.5834 17 6 0.7631 10.3142 -3.6247 18 1 0.3249 9.7496 -4.4343 19 6 1.3918 11.5141 -3.8822 20 7 1.4269 11.9882 -5.1083 21 14 2.1933 12.4663 -2.4892 22 1 3.5695 11.9544 -2.2674 23 1 2.2523 13.9070 -2.8443 24 1 1.3953 12.2944 -1.2487 25 6 0.9827 5.4827 -2.3062 26 6 1.0888 4.1099 -2.3220 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.9280 2.4721 0.1262 33 1 3.8532 0.9572 1.0571 34 1 3.9994 0.9054 -0.7160 35 1 2.3083 3.6143 0.7992 36 1 2.1332 6.0648 0.8371 37 1 0.5368 7.8315 -3.0251 38 1 -0.6546 9.8904 -0.5370 39 1 -0.7569 11.2769 -1.6486 40 1 -1.4573 9.7084 -2.1152 41 1 1.8689 12.8324 -5.2894 42 1 0.6091 6.0062 -3.1740 43 1 0.7980 3.5565 -3.2027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175945671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:32 Heat of formation + Delta-G solvation = -86.817708 kcal Electronic energy + Delta-G solvation = -22743.012722 eV Core-core repulsion = 19366.092063 eV Total energy + Delta-G solvation = -3376.920659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56069 -40.58632 -38.41648 -36.73360 -35.13720 -34.43143 -32.47411 -31.95290 -30.77444 -30.33478 -27.33751 -25.39722 -24.40152 -24.10019 -22.48615 -21.85562 -21.08184 -19.74898 -19.23950 -18.10961 -17.45448 -16.74058 -16.37079 -16.18976 -15.90551 -15.82805 -15.32059 -14.85401 -14.82993 -14.55917 -14.45024 -14.32484 -14.29955 -13.91908 -13.50288 -13.34770 -13.16245 -13.06148 -12.83816 -12.77709 -12.61921 -12.41834 -11.99120 -11.97810 -11.88441 -11.60439 -11.46426 -11.22382 -10.93365 -10.83231 -10.10867 -9.90244 -9.22296 -8.39682 -6.46288 -0.09319 0.31152 1.29062 1.33319 1.44437 1.91433 2.15284 2.26669 2.41864 2.86684 3.03902 3.67396 3.78619 3.81262 3.89372 3.97748 4.08359 4.20062 4.32299 4.42072 4.45439 4.51334 4.64171 4.68876 4.73407 4.77882 4.81123 4.94662 4.99156 5.05266 5.09539 5.13299 5.21201 5.24240 5.26699 5.32808 5.39755 5.42431 5.45671 5.62383 5.71777 6.11770 6.39624 6.58246 6.86597 7.19542 7.40249 8.75175 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033106 B = 0.002979 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.556687 B = 9398.122072 C = 9547.158670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C 0.069 3.931 4 H 0.081 0.919 5 C -0.181 4.181 6 O -0.311 6.311 7 C 0.157 3.843 8 C -0.215 4.215 9 C -0.029 4.029 10 C -0.190 4.190 11 C 0.545 3.455 12 O -0.599 6.599 13 N -0.699 5.699 14 C 0.234 3.766 15 H 0.029 0.971 16 C -0.142 4.142 17 C -0.527 4.527 18 H 0.059 0.941 19 C 0.034 3.966 20 N -0.929 5.929 21 Si 0.926 3.074 22 H -0.276 1.276 23 H -0.275 1.275 24 H -0.255 1.255 25 C -0.042 4.042 26 C -0.163 4.163 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.157 0.843 36 H 0.130 0.870 37 H 0.404 0.596 38 H 0.035 0.965 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.271 0.729 42 H 0.146 0.854 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.279 -25.701 10.734 27.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C 0.014 3.986 4 H 0.099 0.901 5 C -0.238 4.238 6 O -0.224 6.224 7 C 0.111 3.889 8 C -0.233 4.233 9 C -0.048 4.048 10 C -0.193 4.193 11 C 0.335 3.665 12 O -0.483 6.483 13 N -0.348 5.348 14 C 0.130 3.870 15 H 0.047 0.953 16 C -0.201 4.201 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.167 4.167 20 N -0.567 5.567 21 Si 0.751 3.249 22 H -0.202 1.202 23 H -0.201 1.201 24 H -0.179 1.179 25 C -0.061 4.061 26 C -0.181 4.181 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.175 0.825 36 H 0.148 0.852 37 H 0.241 0.759 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.164 0.836 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.518 -25.230 11.120 27.577 hybrid contribution 0.409 0.923 -0.007 1.010 sum 0.927 -24.307 11.113 26.743 Atomic orbital electron populations 1.21782 0.95443 1.02407 1.01739 1.21667 0.96512 0.92760 1.04265 1.22868 0.95932 0.94744 0.85094 0.90086 1.22406 0.94262 1.03026 1.04150 1.86088 1.82999 1.15829 1.37500 1.19333 0.92469 0.83141 0.93986 1.21386 1.08278 0.93899 0.99739 1.21096 0.92922 0.93925 0.96878 1.19871 1.09947 0.91649 0.97824 1.18771 0.76691 0.88229 0.82853 1.90669 1.52860 1.70212 1.34513 1.46324 1.63940 1.08555 1.15945 1.18903 0.94654 0.78022 0.95414 0.95278 1.22128 0.98626 1.00914 0.98398 1.21175 1.36875 1.06133 0.92328 0.92318 1.25596 0.95575 0.98186 0.97339 1.69965 1.44433 1.21336 1.20996 0.86069 0.79688 0.78330 0.80860 1.20200 1.20057 1.17866 1.21306 0.94437 0.93729 0.96605 1.20559 1.05374 0.93229 0.98947 0.92643 0.93523 0.91350 0.90840 0.87803 0.92586 0.88771 0.91540 0.82526 0.85164 0.75927 0.94630 0.92946 0.92155 0.91966 0.83607 0.82712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.81 71.98 0.71 -1.03 16 2 C -0.11 -1.11 5.64 30.60 0.17 -0.94 16 3 C 0.07 0.90 2.23 30.59 0.07 0.97 16 4 H 0.08 0.98 6.34 -2.39 -0.02 0.97 16 5 C -0.18 -2.05 9.15 71.98 0.66 -1.39 16 6 O -0.31 -5.90 9.33 -90.31 -0.84 -6.74 16 7 C 0.16 3.44 6.60 22.63 0.15 3.59 16 8 C -0.21 -4.71 8.19 22.33 0.18 -4.53 16 9 C -0.03 -0.82 9.58 22.51 0.22 -0.60 16 10 C -0.19 -6.08 5.87 -20.09 -0.12 -6.20 16 11 C 0.55 22.34 7.73 86.71 0.67 23.01 16 12 O -0.60 -28.70 16.00 -3.98 -0.06 -28.76 16 13 N -0.70 -29.12 5.02 -449.21 -2.25 -31.38 16 14 C 0.23 11.35 2.18 44.24 0.10 11.45 16 15 H 0.03 1.55 4.86 -2.38 -0.01 1.54 16 16 C -0.14 -6.24 9.46 71.98 0.68 -5.55 16 17 C -0.53 -28.81 9.05 25.60 0.23 -28.58 16 18 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 19 C 0.03 1.91 5.47 84.66 0.46 2.37 16 20 N -0.93 -55.61 13.96 21.45 0.30 -55.31 16 21 Si 0.93 45.12 26.86 68.60 1.84 46.96 16 22 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.25 -12.09 6.94 99.48 0.69 -11.40 16 25 C -0.04 -1.10 9.53 22.51 0.21 -0.89 16 26 C -0.16 -3.65 9.97 22.33 0.22 -3.43 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.67 7.82 -2.39 -0.02 0.65 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.77 6.83 -2.39 -0.02 0.75 16 33 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.16 2.56 5.37 -2.91 -0.02 2.55 16 36 H 0.13 3.77 7.64 -2.91 -0.02 3.75 16 37 H 0.40 14.68 6.61 -92.71 -0.61 14.07 16 38 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 2.30 8.10 -2.38 -0.02 2.28 16 40 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.15 3.41 6.40 -2.91 -0.02 3.39 16 43 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -69.00 352.31 3.98 -65.03 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.38 Total: 21.95 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 4.61 Total: -11.75 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -1.96 Total: -86.68 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.91 Total: -35.50 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.84 Total: 46.96 kcal Total: -69.00 3.98 -65.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175945671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.790 kcal (2) G-P(sol) polarization free energy of solvation -69.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds