Wall clock time and date at job start Tue Mar 31 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46943 * 2 1 4 4 H 1.09001 * 109.47279 * 304.99797 * 3 2 1 5 5 C 1.53005 * 109.47215 * 185.00314 * 3 2 1 6 6 O 1.42894 * 109.46968 * 65.00237 * 3 2 1 7 7 C 1.35710 * 116.99820 * 204.71087 * 6 3 2 8 8 C 1.39000 * 119.91341 * 354.63629 * 7 6 3 9 9 C 1.37705 * 120.08921 * 179.97438 * 8 7 6 10 10 C 1.39735 * 119.90989 * 0.02562 * 9 8 7 11 11 C 1.47599 * 120.08574 * 180.02562 * 10 9 8 12 12 O 1.21582 * 120.00150 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00130 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00228 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.47771 * 34.99588 * 14 13 11 16 16 C 1.52998 * 109.47085 * 274.99468 * 14 13 11 17 17 C 1.50708 * 109.47400 * 154.99802 * 14 13 11 18 18 H 1.07996 * 119.99495 * 0.02562 * 17 14 13 19 19 C 1.37873 * 119.99892 * 180.27435 * 17 14 13 20 20 N 1.31517 * 120.00493 * 359.72020 * 19 17 14 21 21 Si 1.86804 * 119.99823 * 179.72518 * 19 17 14 22 22 H 1.48506 * 109.46943 * 59.99670 * 21 19 17 23 23 H 1.48498 * 109.47358 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47012 * 299.99968 * 21 19 17 25 25 C 1.39728 * 119.82731 * 0.27084 * 10 9 8 26 26 C 1.37710 * 119.91001 * 359.42494 * 25 10 9 27 27 H 1.09002 * 109.46665 * 299.99879 * 1 2 3 28 28 H 1.08996 * 109.47202 * 59.99593 * 1 2 3 29 29 H 1.08999 * 109.46986 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46799 * 240.00636 * 2 1 3 31 31 H 1.09003 * 109.47487 * 120.00123 * 2 1 3 32 32 H 1.08999 * 109.47276 * 179.97438 * 5 3 2 33 33 H 1.09004 * 109.46881 * 300.00350 * 5 3 2 34 34 H 1.08999 * 109.46791 * 59.99702 * 5 3 2 35 35 H 1.07992 * 119.95378 * 359.97438 * 8 7 6 36 36 H 1.07997 * 120.04674 * 180.02562 * 9 8 7 37 37 H 0.96999 * 119.99878 * 359.97438 * 13 11 10 38 38 H 1.08998 * 109.47647 * 300.00516 * 16 14 13 39 39 H 1.09004 * 109.46674 * 59.99934 * 16 14 13 40 40 H 1.09001 * 109.47619 * 180.02562 * 16 14 13 41 41 H 0.96992 * 120.00224 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.05039 * 179.72691 * 25 10 9 43 43 H 1.08002 * 119.95818 * 180.27464 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 8 1.6620 2.0813 1.2210 7 6 1.5581 3.4343 1.2020 8 6 1.9229 4.1416 0.0624 9 6 1.8185 5.5145 0.0389 10 6 1.3455 6.1966 1.1631 11 6 1.2315 7.6680 1.1420 12 8 1.5497 8.2882 0.1458 13 7 0.7747 8.3242 2.2270 14 6 0.6610 9.7846 2.2059 15 1 0.3736 10.1123 1.2069 16 6 2.0082 10.4064 2.5788 17 6 -0.3857 10.2214 3.1983 18 1 -0.9131 9.4848 3.7862 19 6 -0.6736 11.5610 3.3519 20 7 -0.0309 12.4580 2.6364 21 14 -1.9764 12.1019 4.5765 22 1 -1.5881 11.6596 5.9400 23 1 -2.0950 13.5819 4.5518 24 1 -3.2813 11.4940 4.2118 25 6 0.9857 5.4825 2.3089 26 6 1.0871 4.1092 2.3222 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 3.9281 2.4721 -0.1263 33 1 3.9995 0.9053 0.7160 34 1 3.8531 0.9571 -1.0572 35 1 2.2887 3.6137 -0.8058 36 1 2.1017 6.0633 -0.8470 37 1 0.5205 7.8293 3.0216 38 1 2.2957 10.0787 3.5778 39 1 2.7652 10.0905 1.8610 40 1 1.9236 11.4930 2.5636 41 1 -0.2332 13.4004 2.7448 42 1 0.6239 6.0063 3.1813 43 1 0.8050 3.5561 3.2060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175945694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:36 Heat of formation + Delta-G solvation = -66.712694 kcal Electronic energy + Delta-G solvation = -22663.939668 eV Core-core repulsion = 19287.890828 eV Total energy + Delta-G solvation = -3376.048840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.53025 -39.08739 -37.22415 -34.79696 -34.41935 -32.47126 -31.18334 -30.40441 -30.02309 -28.38553 -25.24337 -24.51694 -23.37922 -23.08794 -21.15071 -20.80180 -19.38753 -18.60160 -17.64518 -16.26116 -15.74636 -15.55390 -15.16291 -15.00907 -14.73306 -14.21480 -14.10000 -13.93957 -13.62118 -13.48552 -13.39316 -13.03878 -12.49478 -12.36617 -12.30929 -12.12789 -11.90701 -11.64241 -11.43926 -11.18945 -11.08324 -10.96879 -10.85717 -10.69617 -10.67513 -10.31190 -10.21624 -9.10693 -9.05694 -9.02866 -8.53825 -8.24206 -7.84067 -6.10672 -4.20112 1.09546 1.36380 2.95861 3.26893 3.31460 3.32196 3.33698 4.10456 4.21449 4.29433 4.40066 4.51341 4.63090 4.77274 4.82475 4.93698 5.10459 5.20469 5.21440 5.22722 5.29586 5.37570 5.48103 5.50595 5.57692 5.62051 5.74232 5.79678 5.94231 6.00625 6.23407 6.32173 6.51276 6.65975 6.85856 6.99581 7.17300 7.29755 7.47545 7.58593 7.71597 7.93681 8.16568 8.68109 8.79579 9.13667 9.47371 10.95374 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031221 B = 0.002870 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.613206 B = 9755.366280 C =10278.278813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.078 3.922 4 H 0.076 0.924 5 C -0.182 4.182 6 O -0.307 6.307 7 C 0.146 3.854 8 C -0.222 4.222 9 C -0.024 4.024 10 C -0.160 4.160 11 C 0.545 3.455 12 O -0.555 6.555 13 N -0.703 5.703 14 C 0.264 3.736 15 H 0.050 0.950 16 C -0.147 4.147 17 C -0.535 4.535 18 H 0.061 0.939 19 C 0.066 3.934 20 N -0.884 5.884 21 Si 0.902 3.098 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.048 4.048 26 C -0.161 4.161 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.387 0.613 38 H 0.026 0.974 39 H 0.015 0.985 40 H 0.090 0.910 41 H 0.265 0.735 42 H 0.135 0.865 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.896 -23.617 -3.451 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C 0.022 3.978 4 H 0.094 0.906 5 C -0.240 4.240 6 O -0.221 6.221 7 C 0.100 3.900 8 C -0.240 4.240 9 C -0.043 4.043 10 C -0.163 4.163 11 C 0.331 3.669 12 O -0.436 6.436 13 N -0.351 5.351 14 C 0.163 3.837 15 H 0.067 0.933 16 C -0.206 4.206 17 C -0.573 4.573 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.729 3.271 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.067 4.067 26 C -0.180 4.180 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.221 0.779 38 H 0.046 0.954 39 H 0.034 0.966 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.153 0.847 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.091 -23.052 -4.017 23.754 hybrid contribution -0.697 0.167 0.864 1.123 sum 3.394 -22.885 -3.153 23.349 Atomic orbital electron populations 1.21772 0.95035 1.01871 1.02574 1.21632 0.96930 0.93839 1.03148 1.22542 0.95129 0.93971 0.86134 0.90646 1.22400 0.95161 1.03448 1.02952 1.86059 1.83466 1.16850 1.35679 1.19186 0.94166 0.82323 0.94324 1.21216 1.09113 0.95026 0.98656 1.21075 0.92753 0.92854 0.97647 1.20220 1.06119 0.94504 0.95505 1.18131 0.78452 0.86290 0.84050 1.90719 1.50945 1.68874 1.33044 1.46478 1.63344 1.10648 1.14606 1.18763 0.93644 0.72841 0.98487 0.93257 1.22079 0.96654 1.04451 0.97374 1.21181 1.20905 0.92496 1.22724 0.92113 1.24886 0.96386 0.96381 0.96031 1.69892 1.40860 1.01534 1.39807 0.86503 0.81752 0.77523 0.81280 1.20148 1.21130 1.20160 1.21211 0.95116 0.93043 0.97308 1.20321 1.05987 0.93742 0.97958 0.91844 0.92727 0.92458 0.90092 0.90781 0.91497 0.91392 0.91000 0.85076 0.84521 0.77911 0.95442 0.96588 0.89121 0.92509 0.84705 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.81 37.16 0.36 -0.72 16 2 C -0.12 -0.77 5.64 -26.73 -0.15 -0.92 16 3 C 0.08 0.64 2.22 -26.73 -0.06 0.58 16 4 H 0.08 0.60 6.31 -51.93 -0.33 0.27 16 5 C -0.18 -1.31 9.16 37.16 0.34 -0.97 16 6 O -0.31 -3.36 9.32 -18.84 -0.18 -3.54 16 7 C 0.15 1.79 6.61 -39.02 -0.26 1.54 16 8 C -0.22 -2.73 8.21 -39.49 -0.32 -3.05 16 9 C -0.02 -0.36 9.58 -39.22 -0.38 -0.74 16 10 C -0.16 -2.68 5.87 -104.96 -0.62 -3.30 16 11 C 0.54 11.56 7.73 -12.44 -0.10 11.47 16 12 O -0.56 -13.81 16.00 5.29 0.08 -13.73 16 13 N -0.70 -15.19 5.02 -55.96 -0.28 -15.47 16 14 C 0.26 6.87 2.56 -69.08 -0.18 6.69 16 15 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 16 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 17 C -0.53 -14.32 8.73 -34.44 -0.30 -14.62 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 19 C 0.07 1.80 5.31 -17.82 -0.09 1.71 16 20 N -0.88 -25.09 11.33 55.43 0.63 -24.46 16 21 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 C -0.05 -0.67 9.53 -39.22 -0.37 -1.04 16 26 C -0.16 -2.01 9.97 -39.49 -0.39 -2.41 16 27 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.55 6.88 -51.93 -0.36 0.19 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.13 1.29 5.39 -52.49 -0.28 1.01 16 36 H 0.14 2.06 7.64 -52.49 -0.40 1.66 16 37 H 0.39 7.19 6.56 -40.82 -0.27 6.92 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 2.48 6.08 -51.93 -0.32 2.16 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.14 1.67 6.39 -52.49 -0.34 1.33 16 43 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -31.37 352.62 -8.06 -39.42 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.43 Total: 5.90 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -2.17 Total: -9.16 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.35 Total: -39.93 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.09 Total: -17.26 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.37 -8.06 -39.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175945694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.290 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds