Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46943 * 2 1 4 4 H 1.09001 * 109.47279 * 304.99797 * 3 2 1 5 5 C 1.53005 * 109.47215 * 185.00314 * 3 2 1 6 6 O 1.42894 * 109.46968 * 65.00237 * 3 2 1 7 7 C 1.35710 * 116.99820 * 204.71087 * 6 3 2 8 8 C 1.39000 * 119.91341 * 354.63629 * 7 6 3 9 9 C 1.37705 * 120.08921 * 179.97438 * 8 7 6 10 10 C 1.39735 * 119.90989 * 0.02562 * 9 8 7 11 11 C 1.47599 * 120.08574 * 180.02562 * 10 9 8 12 12 O 1.21582 * 120.00150 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00130 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00228 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.47771 * 34.99588 * 14 13 11 16 16 C 1.52998 * 109.47085 * 274.99468 * 14 13 11 17 17 C 1.50708 * 109.47400 * 154.99802 * 14 13 11 18 18 H 1.07996 * 119.99495 * 0.02562 * 17 14 13 19 19 C 1.37873 * 119.99892 * 180.27435 * 17 14 13 20 20 N 1.31517 * 120.00493 * 359.72020 * 19 17 14 21 21 Si 1.86804 * 119.99823 * 179.72518 * 19 17 14 22 22 H 1.48506 * 109.46943 * 59.99670 * 21 19 17 23 23 H 1.48498 * 109.47358 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47012 * 299.99968 * 21 19 17 25 25 C 1.39728 * 119.82731 * 0.27084 * 10 9 8 26 26 C 1.37710 * 119.91001 * 359.42494 * 25 10 9 27 27 H 1.09002 * 109.46665 * 299.99879 * 1 2 3 28 28 H 1.08996 * 109.47202 * 59.99593 * 1 2 3 29 29 H 1.08999 * 109.46986 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46799 * 240.00636 * 2 1 3 31 31 H 1.09003 * 109.47487 * 120.00123 * 2 1 3 32 32 H 1.08999 * 109.47276 * 179.97438 * 5 3 2 33 33 H 1.09004 * 109.46881 * 300.00350 * 5 3 2 34 34 H 1.08999 * 109.46791 * 59.99702 * 5 3 2 35 35 H 1.07992 * 119.95378 * 359.97438 * 8 7 6 36 36 H 1.07997 * 120.04674 * 180.02562 * 9 8 7 37 37 H 0.96999 * 119.99878 * 359.97438 * 13 11 10 38 38 H 1.08998 * 109.47647 * 300.00516 * 16 14 13 39 39 H 1.09004 * 109.46674 * 59.99934 * 16 14 13 40 40 H 1.09001 * 109.47619 * 180.02562 * 16 14 13 41 41 H 0.96992 * 120.00224 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.05039 * 179.72691 * 25 10 9 43 43 H 1.08002 * 119.95818 * 180.27464 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 8 1.6620 2.0813 1.2210 7 6 1.5581 3.4343 1.2020 8 6 1.9229 4.1416 0.0624 9 6 1.8185 5.5145 0.0389 10 6 1.3455 6.1966 1.1631 11 6 1.2315 7.6680 1.1420 12 8 1.5497 8.2882 0.1458 13 7 0.7747 8.3242 2.2270 14 6 0.6610 9.7846 2.2059 15 1 0.3736 10.1123 1.2069 16 6 2.0082 10.4064 2.5788 17 6 -0.3857 10.2214 3.1983 18 1 -0.9131 9.4848 3.7862 19 6 -0.6736 11.5610 3.3519 20 7 -0.0309 12.4580 2.6364 21 14 -1.9764 12.1019 4.5765 22 1 -1.5881 11.6596 5.9400 23 1 -2.0950 13.5819 4.5518 24 1 -3.2813 11.4940 4.2118 25 6 0.9857 5.4825 2.3089 26 6 1.0871 4.1092 2.3222 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 3.9281 2.4721 -0.1263 33 1 3.9995 0.9053 0.7160 34 1 3.8531 0.9571 -1.0572 35 1 2.2887 3.6137 -0.8058 36 1 2.1017 6.0633 -0.8470 37 1 0.5205 7.8293 3.0216 38 1 2.2957 10.0787 3.5778 39 1 2.7652 10.0905 1.8610 40 1 1.9236 11.4930 2.5636 41 1 -0.2332 13.4004 2.7448 42 1 0.6239 6.0063 3.1813 43 1 0.8050 3.5561 3.2060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175945694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = -85.429556 kcal Electronic energy + Delta-G solvation = -22664.751292 eV Core-core repulsion = 19287.890828 eV Total energy + Delta-G solvation = -3376.860464 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.54915 -40.54659 -38.39587 -36.72815 -35.13420 -34.38998 -32.26478 -31.72280 -30.76321 -30.04690 -27.35071 -25.39337 -24.42590 -24.09809 -22.65634 -21.85665 -20.99373 -19.68731 -19.06721 -17.78645 -17.34392 -16.75343 -16.39685 -16.20862 -15.95762 -15.74547 -15.29330 -14.88222 -14.79851 -14.45966 -14.43001 -14.31803 -13.89402 -13.75390 -13.48148 -13.20744 -12.99374 -12.89636 -12.79585 -12.72146 -12.60726 -12.27445 -12.15411 -11.98876 -11.97629 -11.59974 -11.45758 -11.12921 -10.85856 -10.59183 -10.10703 -9.84461 -9.21461 -8.17516 -6.35607 -0.08379 0.31261 1.45453 1.48001 1.55757 1.94214 2.15436 2.34715 2.60390 2.87890 3.12877 3.67571 3.78767 3.81548 3.91837 3.98571 4.08782 4.20484 4.32816 4.43996 4.51590 4.64193 4.69314 4.72552 4.79132 4.91160 4.95087 4.99406 5.07134 5.09499 5.12348 5.20897 5.23959 5.26813 5.35827 5.42508 5.44968 5.58253 5.62065 5.69049 5.90287 6.08195 6.39684 6.71165 6.92973 7.30848 7.50332 8.88951 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031221 B = 0.002870 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.613206 B = 9755.366280 C =10278.278813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C 0.068 3.932 4 H 0.080 0.920 5 C -0.180 4.180 6 O -0.310 6.310 7 C 0.157 3.843 8 C -0.214 4.214 9 C -0.031 4.031 10 C -0.188 4.188 11 C 0.542 3.458 12 O -0.603 6.603 13 N -0.699 5.699 14 C 0.270 3.730 15 H -0.002 1.002 16 C -0.134 4.134 17 C -0.549 4.549 18 H 0.075 0.925 19 C 0.014 3.986 20 N -0.918 5.918 21 Si 0.975 3.025 22 H -0.263 1.263 23 H -0.286 1.286 24 H -0.270 1.270 25 C -0.041 4.041 26 C -0.161 4.161 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.157 0.843 36 H 0.127 0.873 37 H 0.404 0.596 38 H 0.041 0.959 39 H 0.011 0.989 40 H 0.068 0.932 41 H 0.266 0.734 42 H 0.149 0.851 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.436 -26.555 -2.255 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C 0.013 3.987 4 H 0.098 0.902 5 C -0.238 4.238 6 O -0.223 6.223 7 C 0.110 3.890 8 C -0.232 4.232 9 C -0.051 4.051 10 C -0.192 4.192 11 C 0.331 3.669 12 O -0.487 6.487 13 N -0.348 5.348 14 C 0.167 3.833 15 H 0.016 0.984 16 C -0.193 4.193 17 C -0.587 4.587 18 H 0.093 0.907 19 C -0.186 4.186 20 N -0.556 5.556 21 Si 0.799 3.201 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.195 1.195 25 C -0.060 4.060 26 C -0.179 4.179 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.174 0.826 36 H 0.145 0.855 37 H 0.240 0.760 38 H 0.060 0.940 39 H 0.030 0.970 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.166 0.834 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.632 -26.044 -2.798 26.445 hybrid contribution -0.512 0.902 0.411 1.115 sum 3.120 -25.143 -2.387 25.448 Atomic orbital electron populations 1.21785 0.95510 1.02406 1.01711 1.21667 0.96450 0.92746 1.04302 1.22873 0.95998 0.94741 0.85097 0.90246 1.22399 0.94174 1.03023 1.04171 1.86084 1.83011 1.15819 1.37396 1.19331 0.92500 0.83150 0.93980 1.21369 1.08369 0.93773 0.99731 1.21081 0.93055 0.94014 0.96907 1.19880 1.09968 0.91520 0.97794 1.18820 0.76894 0.88272 0.82886 1.90679 1.52941 1.70429 1.34627 1.46206 1.63773 1.09080 1.15744 1.18384 0.93836 0.75377 0.95724 0.98366 1.21905 0.96413 1.02970 0.97965 1.21511 1.21214 0.93160 1.22831 0.90722 1.25830 0.98507 0.96424 0.97849 1.70049 1.42377 1.01839 1.41338 0.85361 0.78790 0.76851 0.79112 1.18711 1.21141 1.19550 1.21304 0.94374 0.93736 0.96585 1.20571 1.05273 0.93114 0.98942 0.93500 0.92765 0.91314 0.87829 0.90712 0.92610 0.91407 0.88820 0.82585 0.85546 0.75993 0.93952 0.97033 0.91280 0.92479 0.83356 0.82426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.81 71.98 0.71 -1.11 16 2 C -0.11 -1.14 5.64 30.60 0.17 -0.97 16 3 C 0.07 0.92 2.22 30.60 0.07 0.98 16 4 H 0.08 1.02 6.31 -2.39 -0.02 1.01 16 5 C -0.18 -2.06 9.16 71.98 0.66 -1.40 16 6 O -0.31 -5.92 9.32 -90.31 -0.84 -6.76 16 7 C 0.16 3.49 6.61 22.64 0.15 3.64 16 8 C -0.21 -4.91 8.21 22.33 0.18 -4.72 16 9 C -0.03 -0.94 9.58 22.51 0.22 -0.72 16 10 C -0.19 -6.33 5.87 -20.08 -0.12 -6.45 16 11 C 0.54 23.86 7.73 86.71 0.67 24.53 16 12 O -0.60 -31.74 16.00 -3.97 -0.06 -31.81 16 13 N -0.70 -30.89 5.02 -449.21 -2.25 -33.14 16 14 C 0.27 14.54 2.56 44.25 0.11 14.65 16 15 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 16 C -0.13 -7.02 9.26 71.98 0.67 -6.35 16 17 C -0.55 -29.61 8.73 25.60 0.22 -29.39 16 18 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 19 C 0.01 0.76 5.31 84.65 0.45 1.21 16 20 N -0.92 -53.40 11.33 21.45 0.24 -53.15 16 21 Si 0.97 42.28 29.54 68.60 2.03 44.30 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 23 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 C -0.04 -1.09 9.53 22.51 0.21 -0.88 16 26 C -0.16 -3.60 9.97 22.33 0.22 -3.37 16 27 H 0.05 0.69 7.82 -2.39 -0.02 0.67 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.77 6.88 -2.39 -0.02 0.76 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.16 2.71 5.39 -2.91 -0.02 2.70 16 36 H 0.13 3.97 7.64 -2.91 -0.02 3.95 16 37 H 0.40 14.87 6.56 -92.71 -0.61 14.26 16 38 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.07 3.92 6.08 -2.39 -0.01 3.91 16 41 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.15 3.40 6.39 -2.91 -0.02 3.38 16 43 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -70.06 352.62 4.11 -65.96 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.40 Total: 24.94 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 4.60 Total: -10.34 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -2.01 Total: -86.29 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -0.91 Total: -38.56 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -70.06 4.11 -65.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175945694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.472 kcal (2) G-P(sol) polarization free energy of solvation -70.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds