Wall clock time and date at job start Tue Mar 31 2020 06:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47046 * 2 1 4 4 H 1.09006 * 109.46638 * 304.99733 * 3 2 1 5 5 O 1.42892 * 109.47780 * 64.99813 * 3 2 1 6 6 C 1.35905 * 117.00203 * 266.04637 * 5 3 2 7 7 C 1.38758 * 120.05036 * 357.30318 * 6 5 3 8 8 C 1.38123 * 119.94196 * 179.97438 * 7 6 5 9 9 C 1.38288 * 120.05392 * 0.24965 * 8 7 6 10 10 C 1.38246 * 120.11252 * 359.49461 * 9 8 7 11 11 C 1.50708 * 119.97315 * 180.25002 * 10 9 8 12 12 C 1.38160 * 120.05570 * 0.50837 * 10 9 8 13 13 C 1.50699 * 109.47187 * 185.00332 * 3 2 1 14 14 O 1.21286 * 119.99914 * 244.99598 * 13 3 2 15 15 N 1.34778 * 120.00397 * 64.99086 * 13 3 2 16 16 C 1.46498 * 120.00100 * 180.02562 * 15 13 3 17 17 H 1.09004 * 109.47287 * 325.00433 * 16 15 13 18 18 C 1.53002 * 109.47007 * 85.00065 * 16 15 13 19 19 C 1.50697 * 109.47262 * 205.00380 * 16 15 13 20 20 H 1.07998 * 120.00055 * 359.97438 * 19 16 15 21 21 C 1.37876 * 120.00263 * 179.97438 * 19 16 15 22 22 N 1.31519 * 119.99782 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 120.00457 * 179.97438 * 21 19 16 24 24 H 1.48495 * 109.47129 * 89.99791 * 23 21 19 25 25 H 1.48492 * 109.47503 * 210.00475 * 23 21 19 26 26 H 1.48509 * 109.46601 * 330.00445 * 23 21 19 27 27 H 1.08998 * 109.47490 * 60.00413 * 1 2 3 28 28 H 1.09002 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47626 * 300.00386 * 1 2 3 30 30 H 1.08998 * 109.47395 * 239.99694 * 2 1 3 31 31 H 1.08997 * 109.47099 * 119.99215 * 2 1 3 32 32 H 1.08000 * 120.03001 * 359.95259 * 7 6 5 33 33 H 1.07993 * 119.97763 * 179.97438 * 8 7 6 34 34 H 1.08005 * 119.94270 * 179.74217 * 9 8 7 35 35 H 1.08995 * 109.47405 * 270.25434 * 11 10 9 36 36 H 1.09000 * 109.46397 * 30.26021 * 11 10 9 37 37 H 1.08999 * 109.46839 * 150.25045 * 11 10 9 38 38 H 1.07999 * 120.03122 * 179.77058 * 12 10 9 39 39 H 0.96998 * 119.99962 * 0.02562 * 15 13 3 40 40 H 1.09003 * 109.47199 * 179.97438 * 18 16 15 41 41 H 1.08991 * 109.47516 * 299.99978 * 18 16 15 42 42 H 1.09004 * 109.46796 * 60.00067 * 18 16 15 43 43 H 0.96999 * 120.00127 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 -0.8419 5 8 1.6619 2.0815 1.2209 6 6 0.5038 2.7927 1.2123 7 6 -0.2245 2.9203 0.0382 8 6 -1.4015 3.6431 0.0321 9 6 -1.8514 4.2436 1.1937 10 6 -1.1303 4.1135 2.3660 11 6 -1.6265 4.7646 3.6314 12 6 0.0476 3.3916 2.3773 13 6 3.5418 1.4444 -0.1239 14 8 4.2249 1.8612 0.7874 15 7 4.1259 0.9827 -1.2474 16 6 5.5860 0.9840 -1.3675 17 1 5.9916 1.8590 -0.8595 18 6 6.1515 -0.2853 -0.7272 19 6 5.9701 1.0260 -2.8241 20 1 5.2034 1.0489 -3.5844 21 6 7.3004 1.0350 -3.1863 22 7 8.2342 1.0066 -2.2605 23 14 7.7766 1.0863 -4.9919 24 1 7.9041 2.4993 -5.4302 25 1 9.0745 0.3901 -5.1815 26 1 6.7295 0.4101 -5.7993 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5137 0.8900 32 1 0.1287 2.4552 -0.8703 33 1 -1.9686 3.7432 -0.8815 34 1 -2.7699 4.8119 1.1860 35 1 -1.2215 5.7739 3.7037 36 1 -2.7154 4.8103 3.6135 37 1 -1.3016 4.1801 4.4922 38 1 0.6125 3.2933 3.2925 39 1 3.5796 0.6496 -1.9764 40 1 7.2378 -0.2846 -0.8170 41 1 5.8737 -0.3156 0.3263 42 1 5.7459 -1.1602 -1.2353 43 1 9.1701 1.0126 -2.5153 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176271790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:07 Heat of formation + Delta-G solvation = -79.322134 kcal Electronic energy + Delta-G solvation = -23255.172079 eV Core-core repulsion = 19878.576452 eV Total energy + Delta-G solvation = -3376.595626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.79654 -40.36973 -38.61017 -36.73379 -35.00940 -34.10795 -33.41715 -31.30517 -30.96117 -28.19917 -27.84326 -27.34609 -23.61559 -23.46031 -23.43151 -21.84139 -20.94923 -19.32673 -19.03438 -17.69837 -17.23463 -16.93366 -16.77314 -16.61518 -15.88898 -15.66426 -15.38264 -14.88790 -14.71706 -14.47820 -14.41782 -14.12599 -13.82928 -13.72658 -13.29236 -13.06695 -12.99556 -12.93850 -12.86065 -12.77326 -12.70137 -12.47768 -12.28443 -12.13356 -12.07232 -11.83107 -11.44013 -11.14091 -10.72210 -10.58553 -9.86067 -9.72346 -9.08477 -8.18905 -6.37197 0.38026 0.50635 1.45227 1.46020 1.56632 1.60516 1.74269 2.39478 2.72471 2.83299 3.11776 3.55186 3.67746 3.77863 3.93709 3.96759 4.16514 4.25526 4.39489 4.41630 4.47477 4.57903 4.72000 4.73808 4.84211 4.88765 4.89330 4.98428 5.01444 5.05791 5.08282 5.25921 5.29984 5.38277 5.40806 5.51417 5.55176 5.63399 5.67059 5.83036 5.90967 6.05965 6.42241 6.69472 6.85041 7.28255 7.44425 8.87687 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025925 B = 0.003254 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.797301 B = 8603.072777 C = 8673.214976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.075 3.925 4 H 0.124 0.876 5 O -0.313 6.313 6 C 0.114 3.886 7 C -0.223 4.223 8 C -0.074 4.074 9 C -0.164 4.164 10 C -0.052 4.052 11 C -0.113 4.113 12 C -0.180 4.180 13 C 0.497 3.503 14 O -0.589 6.589 15 N -0.693 5.693 16 C 0.271 3.729 17 H -0.005 1.005 18 C -0.134 4.134 19 C -0.547 4.547 20 H 0.078 0.922 21 C 0.013 3.987 22 N -0.919 5.919 23 Si 0.975 3.025 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.256 1.256 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.408 0.592 40 H 0.067 0.933 41 H 0.009 0.991 42 H 0.046 0.954 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.774 2.056 2.673 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.015 3.985 4 H 0.141 0.859 5 O -0.226 6.226 6 C 0.069 3.931 7 C -0.242 4.242 8 C -0.092 4.092 9 C -0.182 4.182 10 C -0.053 4.053 11 C -0.170 4.170 12 C -0.199 4.199 13 C 0.283 3.717 14 O -0.470 6.470 15 N -0.344 5.344 16 C 0.168 3.832 17 H 0.013 0.987 18 C -0.193 4.193 19 C -0.585 4.585 20 H 0.096 0.904 21 C -0.187 4.187 22 N -0.557 5.557 23 Si 0.799 3.201 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.180 1.180 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.244 0.756 40 H 0.086 0.914 41 H 0.028 0.972 42 H 0.065 0.935 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.943 2.303 3.497 23.322 hybrid contribution 0.985 -0.129 -0.847 1.305 sum -21.958 2.174 2.651 22.224 Atomic orbital electron populations 1.21889 0.92548 1.03399 1.02490 1.21999 0.98694 0.92130 1.04292 1.22439 0.90685 0.96947 0.88412 0.85922 1.86184 1.38184 1.63527 1.34748 1.19369 0.85657 0.92462 0.95600 1.21501 0.98766 1.06653 0.97247 1.21283 0.94406 0.94112 0.99401 1.21301 1.01940 1.02883 0.92029 1.20033 0.92645 0.95206 0.97369 1.20865 1.02458 1.00542 0.93103 1.20478 0.99053 1.03532 0.96821 1.20963 0.90510 0.77585 0.82663 1.90664 1.66539 1.48856 1.40892 1.46149 1.09126 1.62218 1.16917 1.18392 0.75315 0.93578 0.95900 0.98659 1.21907 1.03073 0.98377 0.95958 1.21533 0.93038 1.52605 0.91297 0.90367 1.25844 0.96220 0.94041 1.02594 1.70065 1.00850 1.49907 1.34883 0.85298 0.77854 0.78143 0.78765 1.20450 1.21050 1.18002 0.90468 0.90429 0.93504 0.87899 0.91927 0.83974 0.82845 0.83248 0.90268 0.89326 0.91325 0.86332 0.75553 0.91391 0.97214 0.93529 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.45 71.98 0.61 -2.09 16 2 C -0.13 -3.22 5.61 30.59 0.17 -3.05 16 3 C 0.07 2.31 2.57 29.85 0.08 2.38 16 4 H 0.12 3.08 5.37 -2.38 -0.01 3.07 16 5 O -0.31 -10.98 9.21 -73.49 -0.68 -11.66 16 6 C 0.11 3.27 5.31 22.51 0.12 3.39 16 7 C -0.22 -4.98 7.16 22.37 0.16 -4.82 16 8 C -0.07 -1.30 10.04 22.25 0.22 -1.08 16 9 C -0.16 -2.79 9.70 22.28 0.22 -2.57 16 10 C -0.05 -1.06 5.88 -19.88 -0.12 -1.17 16 11 C -0.11 -1.57 10.01 71.24 0.71 -0.85 16 12 C -0.18 -4.79 9.64 22.36 0.22 -4.57 16 13 C 0.50 21.04 7.14 87.66 0.63 21.67 16 14 O -0.59 -31.67 16.17 15.94 0.26 -31.41 16 15 N -0.69 -28.77 4.97 -446.09 -2.22 -30.98 16 16 C 0.27 14.19 2.56 44.25 0.11 14.31 16 17 H 0.00 -0.28 7.58 -2.39 -0.02 -0.30 16 18 C -0.13 -6.88 9.26 71.98 0.67 -6.22 16 19 C -0.55 -28.62 8.73 25.60 0.22 -28.40 16 20 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 21 C 0.01 0.70 5.30 84.65 0.45 1.15 16 22 N -0.92 -52.92 11.32 21.45 0.24 -52.67 16 23 Si 0.98 41.50 29.54 68.60 2.03 43.53 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 25 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 26 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 27 H 0.08 1.14 6.81 -2.39 -0.02 1.12 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.01 6.26 -2.38 -0.01 0.99 16 30 H 0.10 2.12 7.77 -2.39 -0.02 2.10 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.14 2.71 4.57 -2.91 -0.01 2.70 16 33 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 0.85 8.09 -2.39 -0.02 0.83 16 37 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 38 H 0.12 3.24 8.06 -2.91 -0.02 3.21 16 39 H 0.41 13.55 8.24 -92.71 -0.76 12.79 16 40 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -72.89 349.67 4.35 -68.54 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.25 Total: 26.59 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 4.47 Total: -11.93 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -1.97 Total: -83.66 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -0.42 Total: -43.07 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -72.89 4.35 -68.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176271790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.779 kcal (2) G-P(sol) polarization free energy of solvation -72.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds