Wall clock time and date at job start Tue Mar 31 2020 06:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47470 * 2 1 4 4 H 1.08994 * 109.47103 * 55.00263 * 3 2 1 5 5 O 1.42899 * 109.47177 * 294.99692 * 3 2 1 6 6 C 1.35903 * 116.99911 * 99.36499 * 5 3 2 7 7 C 1.38755 * 120.05419 * 354.76112 * 6 5 3 8 8 C 1.38125 * 119.94576 * 179.97438 * 7 6 5 9 9 C 1.38284 * 120.05388 * 359.97438 * 8 7 6 10 10 C 1.38250 * 120.11351 * 0.03985 * 9 8 7 11 11 C 1.50698 * 119.97133 * 179.97438 * 10 9 8 12 12 C 1.38166 * 120.05272 * 359.68129 * 10 9 8 13 13 C 1.50700 * 109.47141 * 175.00096 * 3 2 1 14 14 O 1.21282 * 120.00442 * 114.99899 * 13 3 2 15 15 N 1.34778 * 119.99888 * 294.99841 * 13 3 2 16 16 C 1.46508 * 119.99703 * 179.97438 * 15 13 3 17 17 H 1.08995 * 109.46831 * 35.00520 * 16 15 13 18 18 C 1.52992 * 109.47276 * 274.99873 * 16 15 13 19 19 C 1.50699 * 109.46515 * 155.00074 * 16 15 13 20 20 H 1.08000 * 120.00625 * 3.73301 * 19 16 15 21 21 C 1.37883 * 119.99881 * 183.73198 * 19 16 15 22 22 N 1.31512 * 119.99568 * 5.84150 * 21 19 16 23 23 Si 1.86798 * 120.00101 * 185.84171 * 21 19 16 24 24 H 1.48498 * 109.47260 * 94.99596 * 23 21 19 25 25 H 1.48505 * 109.46797 * 214.99375 * 23 21 19 26 26 H 1.48497 * 109.47190 * 334.99577 * 23 21 19 27 27 H 1.08999 * 109.46966 * 300.00539 * 1 2 3 28 28 H 1.09004 * 109.46694 * 59.99977 * 1 2 3 29 29 H 1.08997 * 109.47533 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47308 * 239.99816 * 2 1 3 31 31 H 1.09001 * 109.47282 * 120.00476 * 2 1 3 32 32 H 1.08003 * 120.02721 * 359.97438 * 7 6 5 33 33 H 1.07997 * 119.97365 * 180.02562 * 8 7 6 34 34 H 1.08001 * 119.94348 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.46757 * 90.00233 * 11 10 9 36 36 H 1.09003 * 109.47096 * 209.99676 * 11 10 9 37 37 H 1.08991 * 109.47415 * 330.00236 * 11 10 9 38 38 H 1.08001 * 120.03172 * 180.29830 * 12 10 9 39 39 H 0.96995 * 120.00096 * 0.02562 * 15 13 3 40 40 H 1.09001 * 109.46944 * 54.85249 * 18 16 15 41 41 H 1.08999 * 109.47134 * 174.85023 * 18 16 15 42 42 H 1.09003 * 109.47512 * 294.85912 * 18 16 15 43 43 H 0.97007 * 119.99766 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 8 1.6621 2.0814 -1.2211 6 6 0.5661 2.8841 -1.1839 7 6 -0.1944 2.9687 -0.0263 8 6 -1.3075 3.7857 0.0092 9 6 -1.6640 4.5194 -1.1075 10 6 -0.9082 4.4366 -2.2621 11 6 -1.2999 5.2371 -3.4773 12 6 0.2095 3.6253 -2.3008 13 6 3.5419 1.4442 0.1238 14 8 4.2251 1.8609 -0.7875 15 7 4.1260 0.9826 1.2474 16 6 5.5861 0.9838 1.3674 17 1 5.9917 1.8586 0.8594 18 6 6.1515 -0.2856 0.7274 19 6 5.9702 1.0258 2.8241 20 1 5.2052 0.9884 3.5856 21 6 7.2982 1.1120 3.1847 22 7 8.2210 1.2732 2.2616 23 14 7.7866 0.9998 4.9842 24 1 8.1555 -0.4011 5.3106 25 1 8.9482 1.8895 5.2382 26 1 6.6445 1.4218 5.8343 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.0839 2.3962 0.8462 33 1 -1.8995 3.8522 0.9100 34 1 -2.5345 5.1579 -1.0776 35 1 -0.8107 6.2107 -3.4442 36 1 -0.9910 4.7058 -4.3775 37 1 -2.3811 5.3740 -3.4892 38 1 0.8025 3.5646 -3.2014 39 1 3.5797 0.6490 1.9761 40 1 5.7980 -0.3624 -0.3008 41 1 7.2406 -0.2422 0.7348 42 1 5.8186 -1.1566 1.2920 43 1 9.1554 1.3334 2.5153 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176271807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:11 Heat of formation + Delta-G solvation = -62.317951 kcal Electronic energy + Delta-G solvation = -23247.705280 eV Core-core repulsion = 19871.847011 eV Total energy + Delta-G solvation = -3375.858270 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.60908 -38.93341 -37.43998 -34.78043 -33.81965 -32.61930 -32.27317 -30.25060 -29.28857 -27.11824 -26.90503 -25.24934 -22.65166 -22.47956 -21.90665 -20.41714 -19.38443 -18.15947 -17.50119 -16.05455 -15.96982 -15.75924 -15.35090 -15.10827 -14.55909 -14.26437 -14.07554 -13.90673 -13.63584 -13.25289 -13.16494 -12.87503 -12.48460 -12.35131 -12.13162 -12.04031 -11.79137 -11.73407 -11.64145 -11.23302 -11.09248 -11.04737 -10.83274 -10.79958 -10.47796 -10.35470 -10.30054 -9.11792 -9.00885 -8.85515 -8.56821 -8.12327 -7.99356 -6.16515 -4.23709 1.24458 1.41076 2.99425 3.22160 3.23725 3.30174 3.32080 3.69589 4.09689 4.35037 4.64844 4.75641 4.76612 4.82731 4.99782 5.07631 5.17347 5.18034 5.20275 5.28581 5.42632 5.43777 5.51817 5.59274 5.63350 5.75983 5.85862 5.97971 6.00722 6.14335 6.31185 6.36161 6.50331 6.71976 6.76829 6.86863 7.06467 7.37069 7.41262 7.54914 7.64968 7.83178 8.03887 8.58186 8.74982 9.03720 9.42823 10.91756 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.003299 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.551836 B = 8485.291988 C = 8517.588616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.137 4.137 3 C 0.062 3.938 4 H 0.098 0.902 5 O -0.280 6.280 6 C 0.142 3.858 7 C -0.220 4.220 8 C -0.076 4.076 9 C -0.166 4.166 10 C -0.050 4.050 11 C -0.114 4.114 12 C -0.155 4.155 13 C 0.501 3.499 14 O -0.532 6.532 15 N -0.704 5.704 16 C 0.265 3.735 17 H 0.054 0.946 18 C -0.142 4.142 19 C -0.537 4.537 20 H 0.062 0.938 21 C 0.068 3.932 22 N -0.881 5.881 23 Si 0.901 3.099 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.133 0.867 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.130 0.870 39 H 0.388 0.612 40 H 0.017 0.983 41 H 0.077 0.923 42 H 0.031 0.969 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.321 1.977 -4.846 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.175 4.175 3 C 0.002 3.998 4 H 0.115 0.885 5 O -0.192 6.192 6 C 0.096 3.904 7 C -0.238 4.238 8 C -0.094 4.094 9 C -0.184 4.184 10 C -0.050 4.050 11 C -0.171 4.171 12 C -0.174 4.174 13 C 0.284 3.716 14 O -0.408 6.408 15 N -0.353 5.353 16 C 0.163 3.837 17 H 0.072 0.928 18 C -0.201 4.201 19 C -0.575 4.575 20 H 0.080 0.920 21 C -0.136 4.136 22 N -0.518 5.518 23 Si 0.728 3.272 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.198 1.198 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.150 0.850 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.148 0.852 39 H 0.221 0.779 40 H 0.037 0.963 41 H 0.096 0.904 42 H 0.050 0.950 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.444 2.256 -5.699 20.387 hybrid contribution 0.078 -0.304 1.636 1.665 sum -19.366 1.951 -4.064 19.884 Atomic orbital electron populations 1.21924 0.94846 1.02206 1.02183 1.21953 0.96823 0.94333 1.04349 1.22542 0.94906 0.94814 0.87515 0.88454 1.86231 1.41899 1.58022 1.33045 1.19103 0.86640 0.90326 0.94288 1.21381 0.98814 1.05199 0.98410 1.20882 0.95660 0.94814 0.98075 1.20882 1.01528 1.02688 0.93308 1.19680 0.93780 0.95828 0.95683 1.20799 1.01646 0.99503 0.95107 1.20312 0.99198 0.99518 0.98322 1.20074 0.88257 0.79380 0.83920 1.90696 1.64563 1.46546 1.39022 1.46460 1.10690 1.62213 1.15980 1.18786 0.72767 0.95630 0.96481 0.92844 1.22021 1.03211 0.98304 0.96536 1.21180 0.92574 1.52929 0.90826 0.91996 1.24896 0.96313 0.94492 0.97898 1.69964 1.01101 1.47923 1.32841 0.86450 0.78286 0.78018 0.84448 1.20539 1.21077 1.19810 0.92397 0.92181 0.92099 0.90135 0.89531 0.84990 0.85927 0.86210 0.90917 0.91345 0.91450 0.85190 0.77924 0.96341 0.90440 0.95031 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.49 37.15 0.32 -1.27 16 2 C -0.14 -1.71 5.61 -26.74 -0.15 -1.86 16 3 C 0.06 0.97 2.53 -27.88 -0.07 0.90 16 4 H 0.10 1.31 5.41 -51.93 -0.28 1.03 16 5 O -0.28 -4.74 9.12 -39.30 -0.36 -5.10 16 6 C 0.14 2.06 5.64 -39.22 -0.22 1.84 16 7 C -0.22 -2.68 7.38 -39.43 -0.29 -2.97 16 8 C -0.08 -0.80 10.04 -39.61 -0.40 -1.20 16 9 C -0.17 -1.70 9.70 -39.56 -0.38 -2.08 16 10 C -0.05 -0.55 5.88 -104.64 -0.62 -1.16 16 11 C -0.11 -0.91 10.01 36.00 0.36 -0.55 16 12 C -0.15 -2.06 9.64 -39.43 -0.38 -2.44 16 13 C 0.50 10.28 7.14 -10.98 -0.08 10.21 16 14 O -0.53 -13.46 16.17 -14.30 -0.23 -13.69 16 15 N -0.70 -14.46 4.97 -54.93 -0.27 -14.73 16 16 C 0.26 6.71 2.45 -69.08 -0.17 6.54 16 17 H 0.05 1.59 7.57 -51.93 -0.39 1.19 16 18 C -0.14 -3.48 9.24 37.15 0.34 -3.14 16 19 C -0.54 -14.08 8.69 -34.44 -0.30 -14.38 16 20 H 0.06 1.54 7.73 -52.49 -0.41 1.13 16 21 C 0.07 1.82 5.27 -17.82 -0.09 1.73 16 22 N -0.88 -24.96 11.91 55.43 0.66 -24.30 16 23 Si 0.90 20.49 29.54 -169.99 -5.02 15.46 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H 0.06 0.52 6.75 -51.93 -0.35 0.17 16 28 H 0.06 0.68 6.54 -51.93 -0.34 0.34 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.09 0.98 7.77 -51.93 -0.40 0.57 16 32 H 0.13 1.44 4.30 -52.48 -0.23 1.21 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 37 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 38 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.39 6.68 8.23 -40.82 -0.34 6.35 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 2.05 6.74 -51.93 -0.35 1.70 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 351.13 15.07 5.29 5.29 Total: -1.00 -31.97 351.13 -8.51 -40.48 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.44 Total: 6.44 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -2.13 Total: -9.85 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.39 Total: -39.03 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.59 Total: -18.80 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.97 -8.51 -40.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176271807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.838 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds