Wall clock time and date at job start Tue Mar 31 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47470 * 2 1 4 4 H 1.08994 * 109.47103 * 55.00263 * 3 2 1 5 5 O 1.42899 * 109.47177 * 294.99692 * 3 2 1 6 6 C 1.35903 * 116.99911 * 99.36499 * 5 3 2 7 7 C 1.38755 * 120.05419 * 354.76112 * 6 5 3 8 8 C 1.38125 * 119.94576 * 179.97438 * 7 6 5 9 9 C 1.38284 * 120.05388 * 359.97438 * 8 7 6 10 10 C 1.38250 * 120.11351 * 0.03985 * 9 8 7 11 11 C 1.50698 * 119.97133 * 179.97438 * 10 9 8 12 12 C 1.38166 * 120.05272 * 359.68129 * 10 9 8 13 13 C 1.50700 * 109.47141 * 175.00096 * 3 2 1 14 14 O 1.21282 * 120.00442 * 114.99899 * 13 3 2 15 15 N 1.34778 * 119.99888 * 294.99841 * 13 3 2 16 16 C 1.46508 * 119.99703 * 179.97438 * 15 13 3 17 17 H 1.08995 * 109.46831 * 35.00520 * 16 15 13 18 18 C 1.52992 * 109.47276 * 274.99873 * 16 15 13 19 19 C 1.50699 * 109.46515 * 155.00074 * 16 15 13 20 20 H 1.08000 * 120.00625 * 3.73301 * 19 16 15 21 21 C 1.37883 * 119.99881 * 183.73198 * 19 16 15 22 22 N 1.31512 * 119.99568 * 5.84150 * 21 19 16 23 23 Si 1.86798 * 120.00101 * 185.84171 * 21 19 16 24 24 H 1.48498 * 109.47260 * 94.99596 * 23 21 19 25 25 H 1.48505 * 109.46797 * 214.99375 * 23 21 19 26 26 H 1.48497 * 109.47190 * 334.99577 * 23 21 19 27 27 H 1.08999 * 109.46966 * 300.00539 * 1 2 3 28 28 H 1.09004 * 109.46694 * 59.99977 * 1 2 3 29 29 H 1.08997 * 109.47533 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47308 * 239.99816 * 2 1 3 31 31 H 1.09001 * 109.47282 * 120.00476 * 2 1 3 32 32 H 1.08003 * 120.02721 * 359.97438 * 7 6 5 33 33 H 1.07997 * 119.97365 * 180.02562 * 8 7 6 34 34 H 1.08001 * 119.94348 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.46757 * 90.00233 * 11 10 9 36 36 H 1.09003 * 109.47096 * 209.99676 * 11 10 9 37 37 H 1.08991 * 109.47415 * 330.00236 * 11 10 9 38 38 H 1.08001 * 120.03172 * 180.29830 * 12 10 9 39 39 H 0.96995 * 120.00096 * 0.02562 * 15 13 3 40 40 H 1.09001 * 109.46944 * 54.85249 * 18 16 15 41 41 H 1.08999 * 109.47134 * 174.85023 * 18 16 15 42 42 H 1.09003 * 109.47512 * 294.85912 * 18 16 15 43 43 H 0.97007 * 119.99766 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 8 1.6621 2.0814 -1.2211 6 6 0.5661 2.8841 -1.1839 7 6 -0.1944 2.9687 -0.0263 8 6 -1.3075 3.7857 0.0092 9 6 -1.6640 4.5194 -1.1075 10 6 -0.9082 4.4366 -2.2621 11 6 -1.2999 5.2371 -3.4773 12 6 0.2095 3.6253 -2.3008 13 6 3.5419 1.4442 0.1238 14 8 4.2251 1.8609 -0.7875 15 7 4.1260 0.9826 1.2474 16 6 5.5861 0.9838 1.3674 17 1 5.9917 1.8586 0.8594 18 6 6.1515 -0.2856 0.7274 19 6 5.9702 1.0258 2.8241 20 1 5.2052 0.9884 3.5856 21 6 7.2982 1.1120 3.1847 22 7 8.2210 1.2732 2.2616 23 14 7.7866 0.9998 4.9842 24 1 8.1555 -0.4011 5.3106 25 1 8.9482 1.8895 5.2382 26 1 6.6445 1.4218 5.8343 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.0839 2.3962 0.8462 33 1 -1.8995 3.8522 0.9100 34 1 -2.5345 5.1579 -1.0776 35 1 -0.8107 6.2107 -3.4442 36 1 -0.9910 4.7058 -4.3775 37 1 -2.3811 5.3740 -3.4892 38 1 0.8025 3.5646 -3.2014 39 1 3.5797 0.6490 1.9761 40 1 5.7980 -0.3624 -0.3008 41 1 7.2406 -0.2422 0.7348 42 1 5.8186 -1.1566 1.2920 43 1 9.1554 1.3334 2.5153 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176271807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:10 Heat of formation + Delta-G solvation = -81.311285 kcal Electronic energy + Delta-G solvation = -23248.528893 eV Core-core repulsion = 19871.847011 eV Total energy + Delta-G solvation = -3376.681883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.77665 -40.35999 -38.60809 -36.71106 -35.01793 -34.10940 -33.42062 -31.30065 -31.00161 -28.20854 -27.84749 -27.31838 -23.62781 -23.46724 -23.42407 -21.86183 -20.95601 -19.31570 -19.02878 -17.69869 -17.23471 -16.92000 -16.74945 -16.58140 -15.88337 -15.63652 -15.43670 -14.89353 -14.73232 -14.47035 -14.41408 -14.11831 -13.86387 -13.72468 -13.31152 -13.10580 -12.97993 -12.94213 -12.87902 -12.70966 -12.67143 -12.46231 -12.36600 -12.14392 -12.07653 -11.82318 -11.47196 -11.14868 -10.68681 -10.59608 -9.86191 -9.72779 -9.10398 -8.20990 -6.36553 0.37511 0.49446 1.45045 1.45598 1.56601 1.61218 1.76848 2.39508 2.72648 2.81756 3.11619 3.56543 3.68396 3.79339 3.93629 3.96112 4.17102 4.23567 4.39728 4.42325 4.47555 4.57374 4.71887 4.74492 4.83615 4.84536 4.88844 4.98419 5.01101 5.02641 5.08912 5.25493 5.30339 5.38237 5.40986 5.50880 5.54999 5.60721 5.66370 5.81556 5.90593 6.00055 6.42163 6.70751 6.85559 7.28658 7.44836 8.88111 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.003299 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.551836 B = 8485.291988 C = 8517.588616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.075 3.925 4 H 0.123 0.877 5 O -0.312 6.312 6 C 0.112 3.888 7 C -0.224 4.224 8 C -0.075 4.075 9 C -0.163 4.163 10 C -0.053 4.053 11 C -0.113 4.113 12 C -0.180 4.180 13 C 0.495 3.505 14 O -0.589 6.589 15 N -0.694 5.694 16 C 0.270 3.730 17 H -0.002 1.002 18 C -0.128 4.128 19 C -0.547 4.547 20 H 0.079 0.921 21 C 0.014 3.986 22 N -0.920 5.920 23 Si 0.974 3.026 24 H -0.272 1.272 25 H -0.289 1.289 26 H -0.259 1.259 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.408 0.592 40 H 0.014 0.986 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.525 1.920 -2.539 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C 0.015 3.985 4 H 0.140 0.860 5 O -0.225 6.225 6 C 0.067 3.933 7 C -0.242 4.242 8 C -0.093 4.093 9 C -0.181 4.181 10 C -0.053 4.053 11 C -0.170 4.170 12 C -0.199 4.199 13 C 0.281 3.719 14 O -0.470 6.470 15 N -0.344 5.344 16 C 0.167 3.833 17 H 0.016 0.984 18 C -0.187 4.187 19 C -0.585 4.585 20 H 0.097 0.903 21 C -0.186 4.186 22 N -0.558 5.558 23 Si 0.798 3.202 24 H -0.197 1.197 25 H -0.215 1.215 26 H -0.183 1.183 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.136 0.864 39 H 0.244 0.756 40 H 0.033 0.967 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.707 2.185 -3.371 23.059 hybrid contribution 1.016 -0.197 0.831 1.328 sum -21.691 1.987 -2.539 21.929 Atomic orbital electron populations 1.21872 0.92543 1.03454 1.02446 1.21977 0.98693 0.91938 1.04339 1.22476 0.90559 0.97128 0.88332 0.85952 1.86179 1.43559 1.59103 1.33685 1.19393 0.86837 0.91217 0.95849 1.21548 0.99107 1.05753 0.97786 1.21299 0.95015 0.93609 0.99337 1.21310 1.01893 1.02290 0.92624 1.20040 0.92834 0.95180 0.97267 1.20864 1.03066 0.99199 0.93846 1.20502 1.00509 1.00829 0.98070 1.21057 0.90665 0.77569 0.82650 1.90663 1.66546 1.48840 1.40926 1.46151 1.09106 1.62230 1.16940 1.18395 0.75362 0.93608 0.95966 0.98404 1.21840 1.01520 0.98756 0.96594 1.21529 0.93204 1.52522 0.91249 0.90322 1.25850 0.96339 0.93957 1.02503 1.70125 1.01450 1.48985 1.35284 0.85306 0.77955 0.78099 0.78823 1.19704 1.21505 1.18297 0.90489 0.93518 0.90331 0.91855 0.87821 0.83780 0.82777 0.83212 0.90307 0.91327 0.89278 0.86393 0.75565 0.96693 0.92920 0.93070 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.49 71.98 0.61 -2.03 16 2 C -0.13 -3.14 5.61 30.59 0.17 -2.97 16 3 C 0.07 2.30 2.53 29.85 0.08 2.37 16 4 H 0.12 3.09 5.41 -2.39 -0.01 3.08 16 5 O -0.31 -10.94 9.12 -73.47 -0.67 -11.61 16 6 C 0.11 3.25 5.64 22.51 0.13 3.38 16 7 C -0.22 -5.02 7.38 22.37 0.16 -4.86 16 8 C -0.07 -1.33 10.04 22.25 0.22 -1.11 16 9 C -0.16 -2.84 9.70 22.28 0.22 -2.63 16 10 C -0.05 -1.10 5.88 -19.88 -0.12 -1.21 16 11 C -0.11 -1.62 10.01 71.24 0.71 -0.91 16 12 C -0.18 -4.90 9.64 22.37 0.22 -4.68 16 13 C 0.49 20.93 7.14 87.66 0.63 21.56 16 14 O -0.59 -31.70 16.17 15.95 0.26 -31.45 16 15 N -0.69 -28.70 4.97 -446.10 -2.22 -30.92 16 16 C 0.27 14.09 2.45 44.24 0.11 14.20 16 17 H 0.00 -0.13 7.57 -2.39 -0.02 -0.14 16 18 C -0.13 -6.47 9.24 71.98 0.66 -5.81 16 19 C -0.55 -28.64 8.69 25.60 0.22 -28.42 16 20 H 0.08 3.77 7.73 -2.91 -0.02 3.75 16 21 C 0.01 0.74 5.27 84.66 0.45 1.18 16 22 N -0.92 -53.53 11.91 21.45 0.26 -53.28 16 23 Si 0.97 41.58 29.54 68.60 2.03 43.61 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 26 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 27 H 0.08 1.10 6.75 -2.39 -0.02 1.08 16 28 H 0.05 0.99 6.54 -2.38 -0.02 0.97 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.10 2.09 7.77 -2.39 -0.02 2.07 16 32 H 0.14 2.73 4.30 -2.91 -0.01 2.72 16 33 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 37 H 0.09 0.89 8.08 -2.39 -0.02 0.87 16 38 H 0.12 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.41 13.47 8.23 -92.71 -0.76 12.71 16 40 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.05 2.90 6.74 -2.39 -0.02 2.88 16 42 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -73.56 351.13 4.37 -69.18 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.25 Total: 26.38 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 4.47 Total: -11.93 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -1.96 Total: -84.19 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.41 Total: -43.05 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -73.56 4.37 -69.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176271807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.127 kcal (2) G-P(sol) polarization free energy of solvation -73.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds