Wall clock time and date at job start Tue Mar 31 2020 06:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47046 * 2 1 4 4 H 1.09006 * 109.46638 * 304.99733 * 3 2 1 5 5 O 1.42892 * 109.47780 * 64.99813 * 3 2 1 6 6 C 1.35905 * 117.00203 * 266.04637 * 5 3 2 7 7 C 1.38758 * 120.05036 * 357.30318 * 6 5 3 8 8 C 1.38123 * 119.94196 * 179.97438 * 7 6 5 9 9 C 1.38288 * 120.05447 * 0.25439 * 8 7 6 10 10 C 1.38247 * 120.11151 * 359.48512 * 9 8 7 11 11 C 1.50708 * 119.97275 * 180.25477 * 10 9 8 12 12 C 1.38160 * 120.05608 * 0.51786 * 10 9 8 13 13 C 1.50699 * 109.47187 * 185.00332 * 3 2 1 14 14 O 1.21286 * 119.99914 * 244.99598 * 13 3 2 15 15 N 1.34778 * 120.00397 * 64.99086 * 13 3 2 16 16 C 1.46498 * 120.00100 * 180.02562 * 15 13 3 17 17 H 1.09003 * 109.47241 * 35.00279 * 16 15 13 18 18 C 1.53002 * 109.47345 * 275.00450 * 16 15 13 19 19 C 1.50695 * 109.47081 * 155.00172 * 16 15 13 20 20 H 1.08000 * 120.00120 * 0.02562 * 19 16 15 21 21 C 1.37876 * 120.00026 * 179.97438 * 19 16 15 22 22 N 1.31512 * 120.00053 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00046 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.47408 * 90.00313 * 23 21 19 25 25 H 1.48506 * 109.47166 * 210.00299 * 23 21 19 26 26 H 1.48494 * 109.47142 * 330.00104 * 23 21 19 27 27 H 1.09007 * 109.47626 * 300.00386 * 1 2 3 28 28 H 1.08998 * 109.47490 * 60.00413 * 1 2 3 29 29 H 1.09002 * 109.47435 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47395 * 239.99694 * 2 1 3 31 31 H 1.08997 * 109.47099 * 119.99215 * 2 1 3 32 32 H 1.08000 * 120.03001 * 359.95259 * 7 6 5 33 33 H 1.07993 * 119.97763 * 179.97438 * 8 7 6 34 34 H 1.08004 * 119.94347 * 179.74822 * 9 8 7 35 35 H 1.08995 * 109.47405 * 270.25907 * 11 10 9 36 36 H 1.09000 * 109.46397 * 30.26495 * 11 10 9 37 37 H 1.08999 * 109.46839 * 150.25519 * 11 10 9 38 38 H 1.07999 * 120.03122 * 179.76584 * 12 10 9 39 39 H 0.96998 * 119.99962 * 0.02562 * 15 13 3 40 40 H 1.09004 * 109.47110 * 59.99906 * 18 16 15 41 41 H 1.08996 * 109.47274 * 179.97438 * 18 16 15 42 42 H 1.09003 * 109.46811 * 300.00092 * 18 16 15 43 43 H 0.97004 * 120.00298 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 -0.8419 5 8 1.6619 2.0815 1.2209 6 6 0.5038 2.7927 1.2123 7 6 -0.2245 2.9203 0.0382 8 6 -1.4015 3.6431 0.0321 9 6 -1.8514 4.2437 1.1937 10 6 -1.1303 4.1135 2.3660 11 6 -1.6265 4.7646 3.6314 12 6 0.0476 3.3916 2.3773 13 6 3.5418 1.4444 -0.1239 14 8 4.2249 1.8612 0.7874 15 7 4.1259 0.9827 -1.2474 16 6 5.5860 0.9840 -1.3675 17 1 6.0308 0.7764 -0.3943 18 6 6.0559 2.3538 -1.8613 19 6 6.0100 -0.0768 -2.3502 20 1 5.2663 -0.6903 -2.8370 21 6 7.3474 -0.2635 -2.6288 22 7 8.2530 0.4840 -2.0365 23 14 7.8730 -1.5780 -3.8475 24 1 7.9254 -0.9952 -5.2123 25 1 9.2169 -2.0889 -3.4756 26 1 6.8948 -2.6949 -3.8233 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5137 0.8900 32 1 0.1287 2.4552 -0.8703 33 1 -1.9686 3.7432 -0.8815 34 1 -2.7699 4.8119 1.1860 35 1 -1.2215 5.7739 3.7037 36 1 -2.7154 4.8103 3.6135 37 1 -1.3016 4.1801 4.4922 38 1 0.6125 3.2933 3.2925 39 1 3.5796 0.6496 -1.9764 40 1 5.7491 3.1211 -1.1505 41 1 7.1422 2.3549 -1.9503 42 1 5.6110 2.5614 -2.8345 43 1 9.1940 0.3524 -2.2322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176271818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:14 Heat of formation + Delta-G solvation = -60.559365 kcal Electronic energy + Delta-G solvation = -23254.157495 eV Core-core repulsion = 19878.375484 eV Total energy + Delta-G solvation = -3375.782012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63940 -38.94048 -37.45378 -34.80005 -33.78705 -32.63507 -32.28781 -30.28684 -29.22022 -27.13502 -26.87913 -25.27914 -22.66195 -22.48908 -21.89662 -20.35088 -19.41558 -18.16937 -17.50492 -16.05012 -15.98744 -15.83365 -15.32544 -15.15243 -14.50896 -14.34168 -14.02070 -13.89828 -13.51671 -13.32337 -13.25604 -12.87516 -12.47425 -12.41705 -12.11763 -11.95239 -11.85313 -11.67561 -11.65712 -11.22719 -11.13783 -10.98255 -10.88457 -10.74615 -10.46485 -10.33397 -10.26416 -9.08644 -9.02176 -8.86986 -8.58863 -8.12967 -7.98354 -6.15086 -4.24915 1.23000 1.40099 2.97612 3.21695 3.23340 3.29641 3.31683 3.67099 4.10858 4.34399 4.62649 4.74135 4.75659 4.83684 4.99564 5.07835 5.16853 5.17714 5.21211 5.27750 5.41506 5.42362 5.51780 5.59187 5.63586 5.75003 5.88439 5.97879 6.01312 6.16791 6.30006 6.34838 6.48938 6.70712 6.79206 6.92999 7.11111 7.37396 7.40989 7.54497 7.65774 7.87536 8.11204 8.57457 8.73627 9.03136 9.42472 10.90901 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031283 B = 0.003232 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.831401 B = 8661.341141 C = 9018.279367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.063 3.937 4 H 0.097 0.903 5 O -0.280 6.280 6 C 0.144 3.856 7 C -0.219 4.219 8 C -0.076 4.076 9 C -0.166 4.166 10 C -0.049 4.049 11 C -0.114 4.114 12 C -0.156 4.156 13 C 0.503 3.497 14 O -0.532 6.532 15 N -0.704 5.704 16 C 0.266 3.734 17 H 0.050 0.950 18 C -0.148 4.148 19 C -0.535 4.535 20 H 0.062 0.938 21 C 0.066 3.934 22 N -0.883 5.883 23 Si 0.903 3.097 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.130 0.870 39 H 0.389 0.611 40 H 0.015 0.985 41 H 0.091 0.909 42 H 0.027 0.973 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.620 4.285 3.935 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C 0.003 3.997 4 H 0.114 0.886 5 O -0.192 6.192 6 C 0.098 3.902 7 C -0.238 4.238 8 C -0.094 4.094 9 C -0.185 4.185 10 C -0.049 4.049 11 C -0.171 4.171 12 C -0.175 4.175 13 C 0.286 3.714 14 O -0.408 6.408 15 N -0.353 5.353 16 C 0.165 3.835 17 H 0.068 0.932 18 C -0.207 4.207 19 C -0.573 4.573 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.730 3.270 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.148 0.852 39 H 0.221 0.779 40 H 0.034 0.966 41 H 0.110 0.890 42 H 0.046 0.954 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.729 4.575 4.772 20.807 hybrid contribution 0.061 -0.862 -1.356 1.608 sum -19.669 3.714 3.416 20.305 Atomic orbital electron populations 1.21944 0.94865 1.02207 1.02167 1.21988 0.96787 0.94398 1.04517 1.22526 0.95002 0.94720 0.87486 0.88584 1.86244 1.36332 1.62440 1.34163 1.19092 0.85770 0.91272 0.94089 1.21346 0.98308 1.06227 0.97882 1.20876 0.95098 0.95404 0.98027 1.20877 1.01326 1.03629 0.92643 1.19676 0.93602 0.96013 0.95639 1.20800 1.01176 1.00583 0.94496 1.20296 0.97766 1.02218 0.97203 1.19998 0.88123 0.79491 0.83833 1.90697 1.64532 1.46405 1.39204 1.46463 1.10710 1.62033 1.16113 1.18784 0.72834 0.93838 0.98062 0.93235 1.22096 1.04539 0.96625 0.97438 1.21190 0.92524 1.18093 1.25496 0.92005 1.24892 0.96343 0.96292 0.96178 1.69902 1.01293 1.38728 1.42059 0.86433 0.78080 0.81508 0.80984 1.20533 1.21040 1.19834 0.92222 0.92391 0.92122 0.89434 0.90088 0.85064 0.85941 0.86222 0.90935 0.91447 0.91342 0.85205 0.77893 0.96625 0.89005 0.95394 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.45 37.15 0.31 -1.32 16 2 C -0.14 -1.80 5.61 -26.73 -0.15 -1.95 16 3 C 0.06 0.97 2.57 -27.88 -0.07 0.90 16 4 H 0.10 1.27 5.37 -51.93 -0.28 0.99 16 5 O -0.28 -4.74 9.21 -39.30 -0.36 -5.10 16 6 C 0.14 2.05 5.31 -39.21 -0.21 1.84 16 7 C -0.22 -2.63 7.16 -39.43 -0.28 -2.91 16 8 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 9 C -0.17 -1.67 9.70 -39.56 -0.38 -2.05 16 10 C -0.05 -0.53 5.88 -104.64 -0.62 -1.14 16 11 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 12 C -0.16 -2.03 9.64 -39.44 -0.38 -2.41 16 13 C 0.50 10.33 7.14 -10.99 -0.08 10.25 16 14 O -0.53 -13.46 16.17 -14.31 -0.23 -13.69 16 15 N -0.70 -14.47 4.97 -54.93 -0.27 -14.74 16 16 C 0.27 6.75 2.56 -69.08 -0.18 6.57 16 17 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 18 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 19 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 22 N -0.88 -24.78 11.32 55.43 0.63 -24.15 16 23 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H 0.06 0.69 6.26 -51.92 -0.33 0.37 16 28 H 0.06 0.53 6.81 -51.93 -0.35 0.18 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.04 7.77 -51.93 -0.40 0.63 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.13 1.42 4.57 -52.49 -0.24 1.18 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 34 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 37 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 38 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.39 6.70 8.24 -40.82 -0.34 6.36 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 349.66 15.07 5.27 5.27 Total: -1.00 -31.73 349.66 -8.52 -40.25 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.41 Total: 6.65 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.12 Total: -9.89 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.35 Total: -38.89 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.59 Total: -18.80 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.73 -8.52 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176271818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.309 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds