Wall clock time and date at job start Tue Mar 31 2020 06:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47046 * 2 1 4 4 H 1.09006 * 109.46638 * 304.99733 * 3 2 1 5 5 O 1.42892 * 109.47780 * 64.99813 * 3 2 1 6 6 C 1.35905 * 117.00203 * 266.04637 * 5 3 2 7 7 C 1.38758 * 120.05036 * 357.30318 * 6 5 3 8 8 C 1.38123 * 119.94196 * 179.97438 * 7 6 5 9 9 C 1.38288 * 120.05447 * 0.25439 * 8 7 6 10 10 C 1.38247 * 120.11151 * 359.48512 * 9 8 7 11 11 C 1.50708 * 119.97275 * 180.25477 * 10 9 8 12 12 C 1.38160 * 120.05608 * 0.51786 * 10 9 8 13 13 C 1.50699 * 109.47187 * 185.00332 * 3 2 1 14 14 O 1.21286 * 119.99914 * 244.99598 * 13 3 2 15 15 N 1.34778 * 120.00397 * 64.99086 * 13 3 2 16 16 C 1.46498 * 120.00100 * 180.02562 * 15 13 3 17 17 H 1.09003 * 109.47241 * 35.00279 * 16 15 13 18 18 C 1.53002 * 109.47345 * 275.00450 * 16 15 13 19 19 C 1.50695 * 109.47081 * 155.00172 * 16 15 13 20 20 H 1.08000 * 120.00120 * 0.02562 * 19 16 15 21 21 C 1.37876 * 120.00026 * 179.97438 * 19 16 15 22 22 N 1.31512 * 120.00053 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00046 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.47408 * 90.00313 * 23 21 19 25 25 H 1.48506 * 109.47166 * 210.00299 * 23 21 19 26 26 H 1.48494 * 109.47142 * 330.00104 * 23 21 19 27 27 H 1.09007 * 109.47626 * 300.00386 * 1 2 3 28 28 H 1.08998 * 109.47490 * 60.00413 * 1 2 3 29 29 H 1.09002 * 109.47435 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47395 * 239.99694 * 2 1 3 31 31 H 1.08997 * 109.47099 * 119.99215 * 2 1 3 32 32 H 1.08000 * 120.03001 * 359.95259 * 7 6 5 33 33 H 1.07993 * 119.97763 * 179.97438 * 8 7 6 34 34 H 1.08004 * 119.94347 * 179.74822 * 9 8 7 35 35 H 1.08995 * 109.47405 * 270.25907 * 11 10 9 36 36 H 1.09000 * 109.46397 * 30.26495 * 11 10 9 37 37 H 1.08999 * 109.46839 * 150.25519 * 11 10 9 38 38 H 1.07999 * 120.03122 * 179.76584 * 12 10 9 39 39 H 0.96998 * 119.99962 * 0.02562 * 15 13 3 40 40 H 1.09004 * 109.47110 * 59.99906 * 18 16 15 41 41 H 1.08996 * 109.47274 * 179.97438 * 18 16 15 42 42 H 1.09003 * 109.46811 * 300.00092 * 18 16 15 43 43 H 0.97004 * 120.00298 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 -0.8419 5 8 1.6619 2.0815 1.2209 6 6 0.5038 2.7927 1.2123 7 6 -0.2245 2.9203 0.0382 8 6 -1.4015 3.6431 0.0321 9 6 -1.8514 4.2437 1.1937 10 6 -1.1303 4.1135 2.3660 11 6 -1.6265 4.7646 3.6314 12 6 0.0476 3.3916 2.3773 13 6 3.5418 1.4444 -0.1239 14 8 4.2249 1.8612 0.7874 15 7 4.1259 0.9827 -1.2474 16 6 5.5860 0.9840 -1.3675 17 1 6.0308 0.7764 -0.3943 18 6 6.0559 2.3538 -1.8613 19 6 6.0100 -0.0768 -2.3502 20 1 5.2663 -0.6903 -2.8370 21 6 7.3474 -0.2635 -2.6288 22 7 8.2530 0.4840 -2.0365 23 14 7.8730 -1.5780 -3.8475 24 1 7.9254 -0.9952 -5.2123 25 1 9.2169 -2.0889 -3.4756 26 1 6.8948 -2.6949 -3.8233 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5137 0.8900 32 1 0.1287 2.4552 -0.8703 33 1 -1.9686 3.7432 -0.8815 34 1 -2.7699 4.8119 1.1860 35 1 -1.2215 5.7739 3.7037 36 1 -2.7154 4.8103 3.6135 37 1 -1.3016 4.1801 4.4922 38 1 0.6125 3.2933 3.2925 39 1 3.5796 0.6496 -1.9764 40 1 5.7491 3.1211 -1.1505 41 1 7.1422 2.3549 -1.9503 42 1 5.6110 2.5614 -2.8345 43 1 9.1940 0.3524 -2.2322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176271818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:13 Heat of formation + Delta-G solvation = -79.282963 kcal Electronic energy + Delta-G solvation = -23254.969412 eV Core-core repulsion = 19878.375484 eV Total energy + Delta-G solvation = -3376.593928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.79633 -40.36863 -38.61014 -36.73428 -35.01099 -34.11069 -33.41565 -31.30004 -30.96075 -28.20346 -27.83867 -27.34927 -23.66281 -23.45793 -23.39928 -21.80962 -20.96997 -19.33044 -19.02316 -17.69955 -17.25702 -16.94301 -16.74699 -16.58566 -16.01555 -15.50743 -15.33699 -14.97653 -14.73071 -14.51691 -14.41189 -14.13198 -13.77519 -13.74323 -13.28507 -13.06964 -13.03551 -12.92113 -12.85035 -12.73311 -12.70608 -12.47669 -12.31313 -12.14678 -12.07264 -11.83309 -11.43733 -11.13580 -10.72331 -10.58585 -9.86079 -9.72131 -9.08306 -8.18640 -6.36820 0.38234 0.50852 1.45219 1.46415 1.56628 1.60422 1.74495 2.39674 2.72420 2.83533 3.12106 3.54953 3.67984 3.77435 3.93914 3.96806 4.16449 4.25581 4.39414 4.41647 4.47632 4.58039 4.71024 4.73625 4.84279 4.87524 4.89444 4.98442 5.01794 5.05065 5.08266 5.26084 5.29762 5.37917 5.40989 5.51582 5.55333 5.62925 5.67255 5.83143 5.90991 6.05706 6.42477 6.69762 6.85074 7.28478 7.44540 8.87967 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031283 B = 0.003232 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.831401 B = 8661.341141 C = 9018.279367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.076 3.924 4 H 0.126 0.874 5 O -0.313 6.313 6 C 0.114 3.886 7 C -0.223 4.223 8 C -0.074 4.074 9 C -0.164 4.164 10 C -0.052 4.052 11 C -0.113 4.113 12 C -0.180 4.180 13 C 0.497 3.503 14 O -0.589 6.589 15 N -0.693 5.693 16 C 0.271 3.729 17 H -0.003 1.003 18 C -0.136 4.136 19 C -0.545 4.545 20 H 0.079 0.921 21 C 0.013 3.987 22 N -0.919 5.919 23 Si 0.975 3.025 24 H -0.270 1.270 25 H -0.289 1.289 26 H -0.261 1.261 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.409 0.591 40 H 0.008 0.992 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.856 3.958 1.846 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.016 3.984 4 H 0.143 0.857 5 O -0.227 6.227 6 C 0.069 3.931 7 C -0.241 4.241 8 C -0.092 4.092 9 C -0.181 4.181 10 C -0.053 4.053 11 C -0.170 4.170 12 C -0.199 4.199 13 C 0.283 3.717 14 O -0.469 6.469 15 N -0.344 5.344 16 C 0.168 3.832 17 H 0.015 0.985 18 C -0.194 4.194 19 C -0.584 4.584 20 H 0.097 0.903 21 C -0.187 4.187 22 N -0.557 5.557 23 Si 0.800 3.200 24 H -0.195 1.195 25 H -0.215 1.215 26 H -0.186 1.186 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.161 0.839 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.245 0.755 40 H 0.027 0.973 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.026 4.241 2.660 23.564 hybrid contribution 1.007 -0.672 -0.619 1.360 sum -22.018 3.569 2.041 22.399 Atomic orbital electron populations 1.21886 0.92476 1.03376 1.02529 1.22004 0.98739 0.92277 1.04223 1.22430 0.90676 0.96834 0.88460 0.85720 1.86188 1.38194 1.63518 1.34764 1.19371 0.85665 0.92442 0.95612 1.21500 0.98764 1.06637 0.97242 1.21284 0.94391 0.94091 0.99402 1.21302 1.01928 1.02890 0.92028 1.20031 0.92639 0.95211 0.97370 1.20865 1.02456 1.00549 0.93109 1.20476 0.99061 1.03550 0.96816 1.20965 0.90520 0.77682 0.82564 1.90664 1.66511 1.48720 1.41050 1.46148 1.09118 1.62033 1.17108 1.18389 0.75367 0.94075 0.95336 0.98545 1.21925 1.03095 0.96367 0.98053 1.21525 0.93173 1.18308 1.25346 0.90323 1.25842 0.96429 0.98452 0.97990 1.70062 1.01608 1.40463 1.43597 0.85295 0.77417 0.78775 0.78552 1.19541 1.21453 1.18556 0.93475 0.90354 0.90525 0.87991 0.92118 0.83924 0.82806 0.83249 0.90245 0.89332 0.91366 0.86385 0.75549 0.97320 0.91305 0.93607 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.45 71.98 0.61 -2.13 16 2 C -0.13 -3.34 5.61 30.59 0.17 -3.17 16 3 C 0.08 2.33 2.57 29.85 0.08 2.41 16 4 H 0.13 3.07 5.37 -2.38 -0.01 3.05 16 5 O -0.31 -10.98 9.21 -73.49 -0.68 -11.65 16 6 C 0.11 3.24 5.31 22.51 0.12 3.36 16 7 C -0.22 -4.89 7.16 22.37 0.16 -4.73 16 8 C -0.07 -1.27 10.04 22.25 0.22 -1.04 16 9 C -0.16 -2.74 9.70 22.28 0.22 -2.53 16 10 C -0.05 -1.05 5.88 -19.88 -0.12 -1.16 16 11 C -0.11 -1.56 10.01 71.24 0.71 -0.84 16 12 C -0.18 -4.77 9.64 22.36 0.22 -4.55 16 13 C 0.50 21.04 7.14 87.66 0.63 21.66 16 14 O -0.59 -31.67 16.17 15.94 0.26 -31.41 16 15 N -0.69 -28.76 4.97 -446.10 -2.22 -30.97 16 16 C 0.27 14.20 2.56 44.24 0.11 14.31 16 17 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 18 C -0.14 -6.98 9.26 71.98 0.67 -6.31 16 19 C -0.55 -28.49 8.73 25.60 0.22 -28.26 16 20 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 21 C 0.01 0.69 5.30 84.65 0.45 1.14 16 22 N -0.92 -52.90 11.32 21.45 0.24 -52.65 16 23 Si 0.98 41.47 29.54 68.60 2.03 43.50 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 27 H 0.05 1.03 6.26 -2.38 -0.01 1.01 16 28 H 0.08 1.16 6.81 -2.39 -0.02 1.14 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 2.21 7.77 -2.39 -0.02 2.19 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.14 2.65 4.57 -2.91 -0.01 2.64 16 33 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.09 0.84 8.09 -2.39 -0.02 0.82 16 37 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 38 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.41 13.54 8.24 -92.71 -0.76 12.78 16 40 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 41 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 42 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -72.83 349.66 4.35 -68.48 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.25 Total: 26.56 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 4.47 Total: -11.85 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -1.97 Total: -83.63 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.42 Total: -43.06 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -72.83 4.35 -68.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176271818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.806 kcal (2) G-P(sol) polarization free energy of solvation -72.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds