Wall clock time and date at job start Tue Mar 31 2020 06:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47496 * 2 1 4 4 H 1.08998 * 109.47708 * 54.99483 * 3 2 1 5 5 O 1.42902 * 109.46973 * 294.99975 * 3 2 1 6 6 C 1.35895 * 117.00540 * 94.14127 * 5 3 2 7 7 C 1.38751 * 120.05228 * 2.29392 * 6 5 3 8 8 C 1.38127 * 119.94523 * 179.97438 * 7 6 5 9 9 C 1.38280 * 120.05491 * 0.02737 * 8 7 6 10 10 C 1.38245 * 120.11168 * 359.97438 * 9 8 7 11 11 C 1.38163 * 120.05733 * 359.67966 * 10 9 8 12 12 C 1.50698 * 120.03067 * 180.29668 * 11 10 9 13 13 C 1.50699 * 109.47701 * 174.99953 * 3 2 1 14 14 O 1.21277 * 120.00191 * 114.99302 * 13 3 2 15 15 N 1.34781 * 119.99791 * 295.00199 * 13 3 2 16 16 C 1.46499 * 119.99984 * 179.97438 * 15 13 3 17 17 H 1.08999 * 109.46981 * 324.99719 * 16 15 13 18 18 C 1.53004 * 109.47116 * 84.99808 * 16 15 13 19 19 C 1.50700 * 109.46938 * 204.99412 * 16 15 13 20 20 H 1.07998 * 119.99951 * 0.02562 * 19 16 15 21 21 C 1.37879 * 119.99857 * 179.97438 * 19 16 15 22 22 N 1.31509 * 119.99781 * 180.02562 * 21 19 16 23 23 Si 1.86797 * 120.00001 * 0.02562 * 21 19 16 24 24 H 1.48499 * 109.47252 * 90.00095 * 23 21 19 25 25 H 1.48501 * 109.47096 * 210.00183 * 23 21 19 26 26 H 1.48499 * 109.47222 * 330.00005 * 23 21 19 27 27 H 1.09003 * 109.47471 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46999 * 60.00129 * 1 2 3 29 29 H 1.08999 * 109.46992 * 300.00615 * 1 2 3 30 30 H 1.09010 * 109.47092 * 119.99739 * 2 1 3 31 31 H 1.08999 * 109.46992 * 239.99385 * 2 1 3 32 32 H 1.08000 * 120.03094 * 359.97438 * 7 6 5 33 33 H 1.08000 * 119.97469 * 179.97438 * 8 7 6 34 34 H 1.07999 * 119.94663 * 179.97438 * 9 8 7 35 35 H 1.08009 * 119.97447 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.47499 * 270.31966 * 12 11 10 37 37 H 1.08992 * 109.47156 * 30.32521 * 12 11 10 38 38 H 1.09002 * 109.46859 * 150.32676 * 12 11 10 39 39 H 0.96996 * 119.99793 * 359.97438 * 15 13 3 40 40 H 1.08994 * 109.47237 * 59.99611 * 18 16 15 41 41 H 1.08998 * 109.46989 * 180.02562 * 18 16 15 42 42 H 1.09004 * 109.46566 * 299.99717 * 18 16 15 43 43 H 0.97006 * 119.99890 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 8 1.6620 2.0813 -1.2211 6 6 0.5060 2.7957 -1.2116 7 6 -0.2246 2.9196 -0.0385 8 6 -1.3990 3.6467 -0.0313 9 6 -1.8470 4.2503 -1.1919 10 6 -1.1209 4.1283 -2.3620 11 6 0.0581 3.4081 -2.3728 12 6 0.8526 3.2811 -3.6471 13 6 3.5419 1.4443 0.1238 14 8 4.2250 1.8609 -0.7875 15 7 4.1260 0.9827 1.2474 16 6 5.5860 0.9840 1.3676 17 1 6.0309 0.7763 0.3944 18 6 6.0559 2.3538 1.8613 19 6 6.0100 -0.0767 2.3506 20 1 5.2663 -0.6907 2.8367 21 6 7.3475 -0.2641 2.6284 22 7 7.7175 -1.1901 3.4858 23 14 8.6338 0.7973 1.7869 24 1 8.8886 2.0093 2.6063 25 1 9.8938 0.0252 1.6402 26 1 8.1417 1.2013 0.4453 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 0.1246 2.4480 0.8681 33 1 -1.9683 3.7431 0.8814 34 1 -2.7657 4.8181 -1.1843 35 1 -1.4731 4.6004 -3.2673 36 1 0.5179 2.4021 -4.1979 37 1 0.7039 4.1713 -4.2582 38 1 1.9107 3.1780 -3.4067 39 1 3.5796 0.6497 1.9764 40 1 5.6111 2.5616 2.8344 41 1 7.1423 2.3549 1.9503 42 1 5.7492 3.1210 1.1503 43 1 8.6584 -1.3216 3.6815 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176272294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:16 Heat of formation + Delta-G solvation = -51.287993 kcal Electronic energy + Delta-G solvation = -23605.305766 eV Core-core repulsion = 20229.925791 eV Total energy + Delta-G solvation = -3375.379975 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.76518 -39.07951 -37.38426 -35.01704 -33.98556 -32.64219 -32.27453 -30.38349 -29.96256 -27.41320 -26.64875 -25.21381 -23.20506 -22.22402 -21.63468 -20.70964 -19.61248 -18.28394 -17.61896 -16.30563 -15.93199 -15.77297 -15.67199 -15.32104 -14.60935 -14.34808 -14.17130 -13.89161 -13.51710 -13.32053 -13.20572 -12.93927 -12.68781 -12.36127 -12.25309 -12.23430 -12.03227 -11.90434 -11.81147 -11.47683 -11.34429 -11.23908 -10.97502 -10.84485 -10.49902 -10.22246 -9.72166 -9.28013 -9.15155 -8.91175 -8.79711 -8.24542 -8.11561 -6.24403 -4.27414 1.20476 1.35033 2.88549 3.05606 3.21686 3.33951 3.38598 3.63732 3.99843 4.29045 4.56190 4.69931 4.75115 4.79101 4.94493 5.04055 5.10371 5.11739 5.17695 5.31026 5.41381 5.49417 5.58959 5.60387 5.68836 5.77526 5.85990 5.97270 6.13777 6.18551 6.24591 6.27184 6.33310 6.37360 6.43135 6.51509 6.68931 6.81248 7.11348 7.20824 7.38250 7.46031 8.08041 8.44034 8.70534 8.82647 9.36054 10.87592 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.003696 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.862816 B = 7574.695474 C = 7945.960414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.063 3.937 4 H 0.098 0.902 5 O -0.277 6.277 6 C 0.137 3.863 7 C -0.210 4.210 8 C -0.086 4.086 9 C -0.161 4.161 10 C -0.085 4.085 11 C -0.118 4.118 12 C -0.108 4.108 13 C 0.505 3.495 14 O -0.533 6.533 15 N -0.696 5.696 16 C 0.238 3.762 17 H 0.050 0.950 18 C -0.162 4.162 19 C -0.536 4.536 20 H 0.081 0.919 21 C 0.079 3.921 22 N -0.891 5.891 23 Si 0.885 3.115 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.262 1.262 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.395 0.605 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.036 0.964 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.205 7.727 -7.405 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C 0.003 3.997 4 H 0.115 0.885 5 O -0.189 6.189 6 C 0.091 3.909 7 C -0.228 4.228 8 C -0.104 4.104 9 C -0.179 4.179 10 C -0.103 4.103 11 C -0.119 4.119 12 C -0.164 4.164 13 C 0.288 3.712 14 O -0.409 6.409 15 N -0.346 5.346 16 C 0.135 3.865 17 H 0.068 0.932 18 C -0.220 4.220 19 C -0.574 4.574 20 H 0.099 0.901 21 C -0.125 4.125 22 N -0.528 5.528 23 Si 0.714 3.286 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.186 1.186 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.229 0.771 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.376 7.888 -8.129 21.587 hybrid contribution 0.417 0.331 0.425 0.682 sum -17.959 8.219 -7.703 21.200 Atomic orbital electron populations 1.21941 0.94773 1.02314 1.02149 1.21997 0.96902 0.94192 1.04641 1.22479 0.94480 0.94987 0.87721 0.88451 1.86223 1.36561 1.62326 1.33795 1.18923 0.86128 0.92081 0.93811 1.21352 0.98164 1.05515 0.97773 1.20886 0.95352 0.95974 0.98198 1.20991 1.01030 1.02811 0.93085 1.20862 0.93411 0.97764 0.98262 1.19285 0.97131 1.01078 0.94373 1.20633 1.00597 1.01637 0.93566 1.20049 0.88417 0.79131 0.83559 1.90688 1.64614 1.46473 1.39159 1.46111 1.09665 1.62251 1.16589 1.19138 0.75560 0.93452 0.98335 0.93236 1.22462 1.00259 0.98821 1.00500 1.21009 0.93769 1.17643 1.24968 0.90117 1.24818 0.98262 0.94988 0.94389 1.69862 1.17145 1.32331 1.33460 0.86885 0.80790 0.79789 0.81113 1.20258 1.22080 1.18628 0.92028 0.92235 0.92368 0.89294 0.90043 0.85001 0.85982 0.86170 0.85634 0.91503 0.91911 0.90534 0.77110 0.92736 0.93321 0.94528 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.45 37.15 0.31 -1.26 16 2 C -0.14 -1.72 5.61 -26.74 -0.15 -1.87 16 3 C 0.06 0.92 2.57 -27.89 -0.07 0.85 16 4 H 0.10 1.19 5.37 -51.93 -0.28 0.91 16 5 O -0.28 -4.37 8.25 -39.27 -0.32 -4.69 16 6 C 0.14 1.84 5.30 -39.22 -0.21 1.64 16 7 C -0.21 -2.39 7.16 -39.43 -0.28 -2.68 16 8 C -0.09 -0.85 10.04 -39.61 -0.40 -1.24 16 9 C -0.16 -1.53 10.04 -39.56 -0.40 -1.92 16 10 C -0.08 -0.87 9.70 -39.61 -0.38 -1.25 16 11 C -0.12 -1.46 5.89 -104.47 -0.62 -2.07 16 12 C -0.11 -1.24 9.79 36.00 0.35 -0.88 16 13 C 0.51 9.66 7.14 -10.98 -0.08 9.58 16 14 O -0.53 -12.47 16.17 -14.30 -0.23 -12.71 16 15 N -0.70 -13.50 4.97 -54.93 -0.27 -13.77 16 16 C 0.24 5.63 2.15 -69.08 -0.15 5.48 16 17 H 0.05 1.30 6.63 -51.93 -0.34 0.95 16 18 C -0.16 -3.62 8.96 37.16 0.33 -3.28 16 19 C -0.54 -14.23 9.31 -34.44 -0.32 -14.55 16 20 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 21 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 22 N -0.89 -26.09 13.96 55.43 0.77 -25.31 16 23 Si 0.88 21.64 24.37 -169.99 -4.14 17.50 16 24 H -0.28 -6.53 6.87 56.52 0.39 -6.14 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.66 6.27 -51.93 -0.33 0.34 16 29 H 0.06 0.52 6.80 -51.93 -0.35 0.16 16 30 H 0.09 1.02 7.77 -51.92 -0.40 0.62 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.13 1.34 4.54 -52.49 -0.24 1.10 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 38 H 0.08 1.05 7.53 -51.93 -0.39 0.66 16 39 H 0.40 6.54 8.24 -40.82 -0.34 6.20 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -32.11 341.50 -7.45 -39.56 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.24 Total: 5.64 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.15 Total: -11.37 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.50 Total: -39.08 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.56 Total: -17.39 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.14 Total: 17.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.11 -7.45 -39.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176272294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.732 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds