Wall clock time and date at job start Tue Mar 31 2020 06:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47496 * 2 1 4 4 H 1.08998 * 109.47708 * 54.99483 * 3 2 1 5 5 O 1.42902 * 109.46973 * 294.99975 * 3 2 1 6 6 C 1.35895 * 117.00540 * 94.14127 * 5 3 2 7 7 C 1.38751 * 120.05228 * 2.29392 * 6 5 3 8 8 C 1.38127 * 119.94523 * 179.97438 * 7 6 5 9 9 C 1.38280 * 120.05491 * 0.02737 * 8 7 6 10 10 C 1.38245 * 120.11168 * 359.97438 * 9 8 7 11 11 C 1.38163 * 120.05733 * 359.67966 * 10 9 8 12 12 C 1.50698 * 120.03067 * 180.29668 * 11 10 9 13 13 C 1.50699 * 109.47701 * 174.99953 * 3 2 1 14 14 O 1.21277 * 120.00191 * 114.99302 * 13 3 2 15 15 N 1.34781 * 119.99791 * 295.00199 * 13 3 2 16 16 C 1.46499 * 119.99984 * 179.97438 * 15 13 3 17 17 H 1.08999 * 109.46981 * 324.99719 * 16 15 13 18 18 C 1.53004 * 109.47116 * 84.99808 * 16 15 13 19 19 C 1.50700 * 109.46938 * 204.99412 * 16 15 13 20 20 H 1.07998 * 119.99951 * 0.02562 * 19 16 15 21 21 C 1.37879 * 119.99857 * 179.97438 * 19 16 15 22 22 N 1.31509 * 119.99781 * 180.02562 * 21 19 16 23 23 Si 1.86797 * 120.00001 * 0.02562 * 21 19 16 24 24 H 1.48499 * 109.47252 * 90.00095 * 23 21 19 25 25 H 1.48501 * 109.47096 * 210.00183 * 23 21 19 26 26 H 1.48499 * 109.47222 * 330.00005 * 23 21 19 27 27 H 1.09003 * 109.47471 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46999 * 60.00129 * 1 2 3 29 29 H 1.08999 * 109.46992 * 300.00615 * 1 2 3 30 30 H 1.09010 * 109.47092 * 119.99739 * 2 1 3 31 31 H 1.08999 * 109.46992 * 239.99385 * 2 1 3 32 32 H 1.08000 * 120.03094 * 359.97438 * 7 6 5 33 33 H 1.08000 * 119.97469 * 179.97438 * 8 7 6 34 34 H 1.07999 * 119.94663 * 179.97438 * 9 8 7 35 35 H 1.08009 * 119.97447 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.47499 * 270.31966 * 12 11 10 37 37 H 1.08992 * 109.47156 * 30.32521 * 12 11 10 38 38 H 1.09002 * 109.46859 * 150.32676 * 12 11 10 39 39 H 0.96996 * 119.99793 * 359.97438 * 15 13 3 40 40 H 1.08994 * 109.47237 * 59.99611 * 18 16 15 41 41 H 1.08998 * 109.46989 * 180.02562 * 18 16 15 42 42 H 1.09004 * 109.46566 * 299.99717 * 18 16 15 43 43 H 0.97006 * 119.99890 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 8 1.6620 2.0813 -1.2211 6 6 0.5060 2.7957 -1.2116 7 6 -0.2246 2.9196 -0.0385 8 6 -1.3990 3.6467 -0.0313 9 6 -1.8470 4.2503 -1.1919 10 6 -1.1209 4.1283 -2.3620 11 6 0.0581 3.4081 -2.3728 12 6 0.8526 3.2811 -3.6471 13 6 3.5419 1.4443 0.1238 14 8 4.2250 1.8609 -0.7875 15 7 4.1260 0.9827 1.2474 16 6 5.5860 0.9840 1.3676 17 1 6.0309 0.7763 0.3944 18 6 6.0559 2.3538 1.8613 19 6 6.0100 -0.0767 2.3506 20 1 5.2663 -0.6907 2.8367 21 6 7.3475 -0.2641 2.6284 22 7 7.7175 -1.1901 3.4858 23 14 8.6338 0.7973 1.7869 24 1 8.8886 2.0093 2.6063 25 1 9.8938 0.0252 1.6402 26 1 8.1417 1.2013 0.4453 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 0.1246 2.4480 0.8681 33 1 -1.9683 3.7431 0.8814 34 1 -2.7657 4.8181 -1.1843 35 1 -1.4731 4.6004 -3.2673 36 1 0.5179 2.4021 -4.1979 37 1 0.7039 4.1713 -4.2582 38 1 1.9107 3.1780 -3.4067 39 1 3.5796 0.6497 1.9764 40 1 5.6111 2.5616 2.8344 41 1 7.1423 2.3549 1.9503 42 1 5.7492 3.1210 1.1503 43 1 8.6584 -1.3216 3.6815 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176272294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:16 Heat of formation + Delta-G solvation = -71.309720 kcal Electronic energy + Delta-G solvation = -23606.173973 eV Core-core repulsion = 20229.925791 eV Total energy + Delta-G solvation = -3376.248182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.84299 -40.44685 -38.44626 -36.84044 -35.07805 -34.29874 -33.40785 -31.85552 -31.06950 -28.51907 -27.54887 -27.22858 -24.10472 -23.68027 -22.48917 -22.11076 -21.14795 -19.26900 -19.25819 -18.03374 -17.35612 -16.87665 -16.85373 -16.43606 -16.03089 -15.68501 -15.43553 -14.93967 -14.92172 -14.77031 -14.44086 -14.15794 -14.00983 -13.73303 -13.57412 -13.35962 -13.21262 -13.15993 -12.96761 -12.80904 -12.79373 -12.29959 -12.17884 -12.08702 -11.90942 -11.63689 -11.42664 -11.31570 -10.89388 -10.71181 -9.98820 -9.70772 -9.01731 -8.39646 -6.45465 0.41287 0.52050 1.25818 1.34771 1.43657 1.54009 1.70678 2.24701 2.66622 2.85501 2.96583 3.53729 3.64370 3.74163 3.90144 3.98875 4.17471 4.25381 4.37189 4.42939 4.44597 4.48504 4.53170 4.66098 4.67209 4.74634 4.78015 4.79073 4.95301 4.99969 5.00759 5.06719 5.27119 5.30115 5.32652 5.37796 5.45224 5.54906 5.56556 5.63874 5.89988 6.10302 6.42639 6.55385 6.75769 7.15535 7.32556 8.75233 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.003696 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.862816 B = 7574.695474 C = 7945.960414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.074 3.926 4 H 0.125 0.875 5 O -0.305 6.305 6 C 0.106 3.894 7 C -0.214 4.214 8 C -0.087 4.087 9 C -0.157 4.157 10 C -0.086 4.086 11 C -0.140 4.140 12 C -0.104 4.104 13 C 0.503 3.497 14 O -0.581 6.581 15 N -0.690 5.690 16 C 0.242 3.758 17 H 0.021 0.979 18 C -0.156 4.156 19 C -0.532 4.532 20 H 0.063 0.937 21 C 0.033 3.967 22 N -0.930 5.930 23 Si 0.935 3.065 24 H -0.259 1.259 25 H -0.292 1.292 26 H -0.266 1.266 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.411 0.589 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.723 9.267 -7.038 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.015 3.985 4 H 0.143 0.857 5 O -0.218 6.218 6 C 0.061 3.939 7 C -0.232 4.232 8 C -0.105 4.105 9 C -0.175 4.175 10 C -0.104 4.104 11 C -0.141 4.141 12 C -0.161 4.161 13 C 0.289 3.711 14 O -0.461 6.461 15 N -0.341 5.341 16 C 0.138 3.862 17 H 0.039 0.961 18 C -0.214 4.214 19 C -0.570 4.570 20 H 0.081 0.919 21 C -0.168 4.168 22 N -0.569 5.569 23 Si 0.762 3.238 24 H -0.184 1.184 25 H -0.219 1.219 26 H -0.191 1.191 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.247 0.753 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.936 9.431 -7.743 24.233 hybrid contribution 1.074 -0.140 0.277 1.118 sum -19.862 9.291 -7.466 23.164 Atomic orbital electron populations 1.21880 0.92592 1.03279 1.02524 1.22000 0.98694 0.92493 1.04157 1.22388 0.90652 0.96722 0.88765 0.85747 1.86182 1.38196 1.63260 1.34142 1.19226 0.86115 0.93287 0.95295 1.21510 0.98597 1.05848 0.97261 1.21269 0.94760 0.94923 0.99541 1.21408 1.01619 1.01988 0.92487 1.21176 0.92497 0.97009 0.99746 1.19561 0.98289 1.01962 0.94271 1.20586 0.98591 1.02832 0.94066 1.20880 0.90531 0.77473 0.82265 1.90659 1.66288 1.48454 1.40650 1.45889 1.08232 1.62432 1.17550 1.18802 0.78006 0.93498 0.95922 0.96120 1.22358 0.99883 0.97796 1.01409 1.21206 0.93432 1.17756 1.24605 0.91919 1.25489 1.00228 0.96059 0.94979 1.69957 1.17752 1.34040 1.35150 0.86072 0.78594 0.78990 0.80130 1.18419 1.21883 1.19125 0.90757 0.93271 0.90502 0.88379 0.91930 0.84038 0.83230 0.83275 0.83307 0.91105 0.89899 0.93697 0.75316 0.91158 0.93958 0.93919 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.45 71.98 0.61 -2.06 16 2 C -0.14 -3.24 5.61 30.59 0.17 -3.06 16 3 C 0.07 2.12 2.57 29.85 0.08 2.20 16 4 H 0.13 2.82 5.37 -2.39 -0.01 2.80 16 5 O -0.30 -9.72 8.25 -73.38 -0.61 -10.33 16 6 C 0.11 2.77 5.30 22.51 0.12 2.89 16 7 C -0.21 -4.39 7.16 22.37 0.16 -4.23 16 8 C -0.09 -1.41 10.04 22.25 0.22 -1.18 16 9 C -0.16 -2.40 10.04 22.28 0.22 -2.18 16 10 C -0.09 -1.54 9.70 22.25 0.22 -1.33 16 11 C -0.14 -3.34 5.89 -19.77 -0.12 -3.46 16 12 C -0.10 -2.41 9.79 71.24 0.70 -1.71 16 13 C 0.50 19.40 7.14 87.66 0.63 20.02 16 14 O -0.58 -28.04 16.17 15.97 0.26 -27.78 16 15 N -0.69 -26.66 4.97 -446.09 -2.22 -28.88 16 16 C 0.24 11.49 2.15 44.25 0.10 11.58 16 17 H 0.02 1.12 6.63 -2.39 -0.02 1.10 16 18 C -0.16 -6.82 8.96 71.98 0.65 -6.18 16 19 C -0.53 -28.48 9.31 25.60 0.24 -28.24 16 20 H 0.06 3.51 7.98 -2.91 -0.02 3.49 16 21 C 0.03 1.82 5.45 84.66 0.46 2.28 16 22 N -0.93 -55.00 13.96 21.45 0.30 -54.70 16 23 Si 0.93 44.64 24.37 68.60 1.67 46.32 16 24 H -0.26 -11.57 6.87 99.48 0.68 -10.89 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.27 -12.84 6.53 99.48 0.65 -12.19 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.03 6.27 -2.39 -0.01 1.01 16 29 H 0.08 1.12 6.80 -2.39 -0.02 1.10 16 30 H 0.10 2.13 7.77 -2.38 -0.02 2.11 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.14 2.47 4.54 -2.91 -0.01 2.46 16 33 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 34 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 38 H 0.04 1.30 7.53 -2.39 -0.02 1.28 16 39 H 0.41 13.24 8.24 -92.71 -0.76 12.48 16 40 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.04 1.89 3.27 -2.39 -0.01 1.88 16 42 H 0.04 1.78 8.14 -2.38 -0.02 1.77 16 43 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -71.04 341.50 4.03 -67.00 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.18 Total: 23.02 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 4.45 Total: -14.65 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -1.92 Total: -83.58 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.35 Total: -38.11 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.67 Total: 46.32 kcal Total: -71.04 4.03 -67.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176272294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.305 kcal (2) G-P(sol) polarization free energy of solvation -71.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds