Wall clock time and date at job start Tue Mar 31 2020 06:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46885 * 2 1 4 4 H 1.09000 * 109.47196 * 55.00028 * 3 2 1 5 5 O 1.42898 * 109.47491 * 295.00089 * 3 2 1 6 6 C 1.35906 * 116.99848 * 94.14597 * 5 3 2 7 7 C 1.38749 * 120.05795 * 2.29437 * 6 5 3 8 8 C 1.38124 * 119.94489 * 180.02562 * 7 6 5 9 9 C 1.38282 * 120.05630 * 0.02562 * 8 7 6 10 10 C 1.38251 * 120.11021 * 0.02562 * 9 8 7 11 11 C 1.38165 * 120.05519 * 359.67623 * 10 9 8 12 12 C 1.50698 * 120.02657 * 180.30148 * 11 10 9 13 13 C 1.50703 * 109.47155 * 175.00024 * 3 2 1 14 14 O 1.21278 * 120.00090 * 114.99760 * 13 3 2 15 15 N 1.34777 * 119.99994 * 295.00506 * 13 3 2 16 16 C 1.46500 * 119.99956 * 179.97438 * 15 13 3 17 17 H 1.08996 * 109.47193 * 34.99376 * 16 15 13 18 18 C 1.52996 * 109.46760 * 274.99771 * 16 15 13 19 19 C 1.50694 * 109.47053 * 154.99644 * 16 15 13 20 20 H 1.08006 * 120.00311 * 0.02562 * 19 16 15 21 21 C 1.37881 * 119.99860 * 179.97438 * 19 16 15 22 22 N 1.31517 * 119.99958 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99808 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46782 * 90.00411 * 23 21 19 25 25 H 1.48506 * 109.47124 * 210.00018 * 23 21 19 26 26 H 1.48495 * 109.47559 * 330.00094 * 23 21 19 27 27 H 1.08996 * 109.47661 * 59.99626 * 1 2 3 28 28 H 1.09009 * 109.47159 * 299.99594 * 1 2 3 29 29 H 1.08996 * 109.47157 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46978 * 120.00062 * 2 1 3 31 31 H 1.08998 * 109.46667 * 240.00367 * 2 1 3 32 32 H 1.08006 * 120.02744 * 359.97438 * 7 6 5 33 33 H 1.08004 * 119.97054 * 180.02562 * 8 7 6 34 34 H 1.08003 * 119.94547 * 179.97438 * 9 8 7 35 35 H 1.08000 * 119.96717 * 179.97438 * 10 9 8 36 36 H 1.09006 * 109.46912 * 270.31671 * 12 11 10 37 37 H 1.09000 * 109.47200 * 30.31480 * 12 11 10 38 38 H 1.08999 * 109.47354 * 150.32410 * 12 11 10 39 39 H 0.96994 * 119.99840 * 359.97438 * 15 13 3 40 40 H 1.08998 * 109.47457 * 299.99827 * 18 16 15 41 41 H 1.08995 * 109.47465 * 59.99823 * 18 16 15 42 42 H 1.09001 * 109.46935 * 180.02562 * 18 16 15 43 43 H 0.96997 * 119.99506 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 0.5058 2.7958 -1.2113 7 6 -0.2247 2.9197 -0.0382 8 6 -1.3996 3.6459 -0.0311 9 6 -1.8483 4.2487 -1.1919 10 6 -1.1227 4.1259 -2.3623 11 6 0.0564 3.4058 -2.3732 12 6 0.8502 3.2780 -3.6477 13 6 3.5419 1.4444 0.1238 14 8 4.2250 1.8611 -0.7875 15 7 4.1260 0.9828 1.2473 16 6 5.5861 0.9841 1.3674 17 1 5.9917 1.8589 0.8593 18 6 6.1515 -0.2853 0.7272 19 6 5.9702 1.0261 2.8240 20 1 5.2034 1.0490 3.5843 21 6 7.3006 1.0341 3.1862 22 7 8.2343 1.0056 2.2604 23 14 7.7767 1.0869 4.9917 24 1 7.9001 -0.2987 5.5118 25 1 9.0768 1.7890 5.1405 26 1 6.7319 1.8122 5.7582 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 0.1246 2.4480 0.8684 33 1 -1.9684 3.7429 0.8819 34 1 -2.7674 4.8158 -1.1844 35 1 -1.4754 4.5974 -3.2677 36 1 0.5153 2.3986 -4.1978 37 1 0.7010 4.1678 -4.2594 38 1 1.9085 3.1752 -3.4079 39 1 3.5797 0.6497 1.9763 40 1 5.7460 -1.1602 1.2353 41 1 5.8737 -0.3157 -0.3263 42 1 7.2378 -0.2845 0.8170 43 1 9.1702 1.0117 2.5152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176272322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:22 Heat of formation + Delta-G solvation = -59.616374 kcal Electronic energy + Delta-G solvation = -23532.637050 eV Core-core repulsion = 20156.895929 eV Total energy + Delta-G solvation = -3375.741121 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.68444 -38.91947 -37.27259 -34.79815 -33.93054 -32.60536 -32.21338 -30.25751 -29.23019 -27.20246 -26.54962 -25.27908 -23.16165 -22.07013 -21.57656 -20.68326 -19.39196 -18.23321 -17.51996 -16.01307 -15.85481 -15.73385 -15.48999 -15.11325 -14.51851 -14.30288 -14.08502 -13.85687 -13.45150 -13.21728 -13.10671 -12.64304 -12.48578 -12.29059 -12.14975 -12.04113 -11.85216 -11.68376 -11.43573 -11.22633 -11.13435 -11.02337 -10.89528 -10.77038 -10.43393 -10.35284 -10.26427 -9.08696 -9.02463 -8.85752 -8.59067 -8.05520 -7.98708 -6.15342 -4.25140 1.25738 1.40560 2.99084 3.21572 3.23215 3.29583 3.31713 3.69257 4.11097 4.34653 4.62831 4.75462 4.80148 4.85637 5.01636 5.08083 5.17115 5.18971 5.22702 5.36138 5.49891 5.54708 5.63750 5.64543 5.73859 5.82781 5.86034 5.98999 6.15254 6.24035 6.29908 6.42595 6.48497 6.74430 6.79355 6.92999 7.10950 7.37085 7.40936 7.54176 7.65627 7.87530 8.11159 8.57336 8.73410 9.02949 9.42286 10.90634 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.003531 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.271849 B = 7928.654478 C = 8140.726819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.138 4.138 3 C 0.062 3.938 4 H 0.097 0.903 5 O -0.277 6.277 6 C 0.137 3.863 7 C -0.210 4.210 8 C -0.086 4.086 9 C -0.162 4.162 10 C -0.085 4.085 11 C -0.118 4.118 12 C -0.108 4.108 13 C 0.503 3.497 14 O -0.532 6.532 15 N -0.704 5.704 16 C 0.266 3.734 17 H 0.049 0.951 18 C -0.147 4.147 19 C -0.535 4.535 20 H 0.062 0.938 21 C 0.067 3.933 22 N -0.882 5.882 23 Si 0.902 3.098 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.388 0.612 40 H 0.027 0.973 41 H 0.015 0.985 42 H 0.091 0.909 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.550 1.430 -4.929 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C 0.002 3.998 4 H 0.114 0.886 5 O -0.188 6.188 6 C 0.091 3.909 7 C -0.228 4.228 8 C -0.104 4.104 9 C -0.180 4.180 10 C -0.103 4.103 11 C -0.119 4.119 12 C -0.164 4.164 13 C 0.286 3.714 14 O -0.408 6.408 15 N -0.353 5.353 16 C 0.165 3.835 17 H 0.067 0.933 18 C -0.206 4.206 19 C -0.574 4.574 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.730 3.270 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.221 0.779 40 H 0.046 0.954 41 H 0.034 0.966 42 H 0.110 0.890 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.653 1.701 -5.774 19.600 hybrid contribution -0.061 -0.183 1.656 1.667 sum -18.714 1.518 -4.118 19.222 Atomic orbital electron populations 1.21945 0.94850 1.02181 1.02214 1.21976 0.96819 0.94452 1.04337 1.22524 0.95016 0.94683 0.87611 0.88590 1.86230 1.36478 1.62266 1.33875 1.18937 0.86108 0.92060 0.93779 1.21352 0.98120 1.05553 0.97787 1.20878 0.95373 0.96019 0.98164 1.20984 1.01045 1.02868 0.93097 1.20857 0.93446 0.97763 0.98244 1.19285 0.97104 1.01123 0.94381 1.20634 1.00671 1.01586 0.93543 1.19992 0.88107 0.79378 0.83931 1.90692 1.64557 1.46587 1.38999 1.46464 1.10708 1.62199 1.15961 1.18783 0.72719 0.95669 0.96367 0.93272 1.22083 1.04573 0.97787 0.96163 1.21196 0.92369 1.52867 0.90924 0.92029 1.24891 0.96220 0.94588 0.97980 1.69903 1.00507 1.49053 1.32510 0.86435 0.78050 0.78163 0.84372 1.20518 1.21031 1.19841 0.92185 0.92377 0.92154 0.89574 0.90161 0.85021 0.86030 0.86208 0.85659 0.91558 0.91913 0.90467 0.77908 0.95395 0.96583 0.89049 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.45 37.16 0.31 -1.29 16 2 C -0.14 -1.73 5.61 -26.73 -0.15 -1.88 16 3 C 0.06 0.95 2.57 -27.88 -0.07 0.88 16 4 H 0.10 1.28 5.37 -51.93 -0.28 1.00 16 5 O -0.28 -4.59 8.25 -39.31 -0.32 -4.91 16 6 C 0.14 1.95 5.30 -39.22 -0.21 1.74 16 7 C -0.21 -2.54 7.16 -39.43 -0.28 -2.82 16 8 C -0.09 -0.90 10.04 -39.61 -0.40 -1.30 16 9 C -0.16 -1.62 10.04 -39.56 -0.40 -2.01 16 10 C -0.09 -0.91 9.70 -39.60 -0.38 -1.30 16 11 C -0.12 -1.53 5.89 -104.47 -0.62 -2.15 16 12 C -0.11 -1.30 9.79 36.00 0.35 -0.95 16 13 C 0.50 10.23 7.14 -10.98 -0.08 10.15 16 14 O -0.53 -13.29 16.17 -14.30 -0.23 -13.52 16 15 N -0.70 -14.40 4.97 -54.94 -0.27 -14.67 16 16 C 0.27 6.72 2.56 -69.09 -0.18 6.55 16 17 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 18 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 19 C -0.54 -14.00 8.73 -34.44 -0.30 -14.30 16 20 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 22 N -0.88 -24.73 11.32 55.43 0.63 -24.11 16 23 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H 0.06 0.69 6.27 -51.93 -0.33 0.36 16 28 H 0.06 0.53 6.80 -51.92 -0.35 0.18 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.98 7.77 -51.93 -0.40 0.58 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.13 1.44 4.54 -52.48 -0.24 1.20 16 33 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 34 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.08 1.11 7.53 -51.93 -0.39 0.72 16 39 H 0.39 6.68 8.24 -40.82 -0.34 6.34 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -31.42 348.32 -8.50 -39.91 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.38 Total: 6.94 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -2.15 Total: -10.29 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.35 Total: -38.78 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.56 Total: -18.43 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.42 -8.50 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176272322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.702 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds