Wall clock time and date at job start Tue Mar 31 2020 06:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46885 * 2 1 4 4 H 1.09000 * 109.47196 * 55.00028 * 3 2 1 5 5 O 1.42898 * 109.47491 * 295.00089 * 3 2 1 6 6 C 1.35906 * 116.99848 * 94.14597 * 5 3 2 7 7 C 1.38749 * 120.05795 * 2.29437 * 6 5 3 8 8 C 1.38124 * 119.94489 * 180.02562 * 7 6 5 9 9 C 1.38282 * 120.05630 * 0.02562 * 8 7 6 10 10 C 1.38251 * 120.11021 * 0.02562 * 9 8 7 11 11 C 1.38165 * 120.05519 * 359.67623 * 10 9 8 12 12 C 1.50698 * 120.02657 * 180.30148 * 11 10 9 13 13 C 1.50703 * 109.47155 * 175.00024 * 3 2 1 14 14 O 1.21278 * 120.00090 * 114.99760 * 13 3 2 15 15 N 1.34777 * 119.99994 * 295.00506 * 13 3 2 16 16 C 1.46500 * 119.99956 * 179.97438 * 15 13 3 17 17 H 1.08996 * 109.47193 * 34.99376 * 16 15 13 18 18 C 1.52996 * 109.46760 * 274.99771 * 16 15 13 19 19 C 1.50694 * 109.47053 * 154.99644 * 16 15 13 20 20 H 1.08006 * 120.00311 * 0.02562 * 19 16 15 21 21 C 1.37881 * 119.99860 * 179.97438 * 19 16 15 22 22 N 1.31517 * 119.99958 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99808 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46782 * 90.00411 * 23 21 19 25 25 H 1.48506 * 109.47124 * 210.00018 * 23 21 19 26 26 H 1.48495 * 109.47559 * 330.00094 * 23 21 19 27 27 H 1.08996 * 109.47661 * 59.99626 * 1 2 3 28 28 H 1.09009 * 109.47159 * 299.99594 * 1 2 3 29 29 H 1.08996 * 109.47157 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46978 * 120.00062 * 2 1 3 31 31 H 1.08998 * 109.46667 * 240.00367 * 2 1 3 32 32 H 1.08006 * 120.02744 * 359.97438 * 7 6 5 33 33 H 1.08004 * 119.97054 * 180.02562 * 8 7 6 34 34 H 1.08003 * 119.94547 * 179.97438 * 9 8 7 35 35 H 1.08000 * 119.96717 * 179.97438 * 10 9 8 36 36 H 1.09006 * 109.46912 * 270.31671 * 12 11 10 37 37 H 1.09000 * 109.47200 * 30.31480 * 12 11 10 38 38 H 1.08999 * 109.47354 * 150.32410 * 12 11 10 39 39 H 0.96994 * 119.99840 * 359.97438 * 15 13 3 40 40 H 1.08998 * 109.47457 * 299.99827 * 18 16 15 41 41 H 1.08995 * 109.47465 * 59.99823 * 18 16 15 42 42 H 1.09001 * 109.46935 * 180.02562 * 18 16 15 43 43 H 0.96997 * 119.99506 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 0.5058 2.7958 -1.2113 7 6 -0.2247 2.9197 -0.0382 8 6 -1.3996 3.6459 -0.0311 9 6 -1.8483 4.2487 -1.1919 10 6 -1.1227 4.1259 -2.3623 11 6 0.0564 3.4058 -2.3732 12 6 0.8502 3.2780 -3.6477 13 6 3.5419 1.4444 0.1238 14 8 4.2250 1.8611 -0.7875 15 7 4.1260 0.9828 1.2473 16 6 5.5861 0.9841 1.3674 17 1 5.9917 1.8589 0.8593 18 6 6.1515 -0.2853 0.7272 19 6 5.9702 1.0261 2.8240 20 1 5.2034 1.0490 3.5843 21 6 7.3006 1.0341 3.1862 22 7 8.2343 1.0056 2.2604 23 14 7.7767 1.0869 4.9917 24 1 7.9001 -0.2987 5.5118 25 1 9.0768 1.7890 5.1405 26 1 6.7319 1.8122 5.7582 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 0.1246 2.4480 0.8684 33 1 -1.9684 3.7429 0.8819 34 1 -2.7674 4.8158 -1.1844 35 1 -1.4754 4.5974 -3.2677 36 1 0.5153 2.3986 -4.1978 37 1 0.7010 4.1678 -4.2594 38 1 1.9085 3.1752 -3.4079 39 1 3.5797 0.6497 1.9763 40 1 5.7460 -1.1602 1.2353 41 1 5.8737 -0.3157 -0.3263 42 1 7.2378 -0.2845 0.8170 43 1 9.1702 1.0117 2.5152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176272322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:21 Heat of formation + Delta-G solvation = -78.009020 kcal Electronic energy + Delta-G solvation = -23533.434615 eV Core-core repulsion = 20156.895929 eV Total energy + Delta-G solvation = -3376.538686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.81555 -40.37362 -38.41421 -36.72116 -35.07327 -34.18866 -33.37811 -31.31526 -30.88892 -28.39759 -27.53786 -27.33836 -24.10513 -23.57741 -22.48970 -22.15401 -21.03701 -19.28013 -19.13679 -17.69737 -17.19830 -16.90715 -16.74685 -16.44425 -15.92867 -15.66999 -15.45589 -14.83228 -14.76719 -14.46801 -14.42206 -14.01077 -13.77431 -13.58765 -13.27491 -13.17585 -13.05278 -12.99910 -12.85722 -12.78926 -12.72452 -12.31437 -12.29254 -12.14756 -12.08610 -11.89372 -11.42567 -11.12926 -10.71699 -10.58165 -9.85157 -9.70900 -9.01502 -8.18795 -6.37012 0.41133 0.52100 1.45101 1.46233 1.56603 1.61779 1.76747 2.39741 2.74301 2.86318 3.11873 3.55912 3.68650 3.78310 3.90224 3.99437 4.18480 4.25295 4.40480 4.44305 4.49708 4.67133 4.72493 4.75350 4.77737 4.78485 4.89028 4.99692 5.00294 5.06005 5.07401 5.30746 5.32381 5.38645 5.45369 5.55195 5.56323 5.63289 5.64054 5.83762 5.93216 6.06256 6.43553 6.69644 6.85853 7.28633 7.45017 8.87747 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.003531 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.271849 B = 7928.654478 C = 8140.726819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.074 3.926 4 H 0.121 0.879 5 O -0.307 6.307 6 C 0.105 3.895 7 C -0.214 4.214 8 C -0.087 4.087 9 C -0.157 4.157 10 C -0.086 4.086 11 C -0.141 4.141 12 C -0.104 4.104 13 C 0.498 3.502 14 O -0.588 6.588 15 N -0.694 5.694 16 C 0.271 3.729 17 H -0.004 1.004 18 C -0.134 4.134 19 C -0.547 4.547 20 H 0.078 0.922 21 C 0.014 3.986 22 N -0.919 5.919 23 Si 0.975 3.025 24 H -0.270 1.270 25 H -0.288 1.288 26 H -0.262 1.262 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.142 0.858 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.042 0.958 39 H 0.408 0.592 40 H 0.045 0.955 41 H 0.009 0.991 42 H 0.067 0.933 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.794 1.525 -2.902 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C 0.014 3.986 4 H 0.139 0.861 5 O -0.220 6.220 6 C 0.060 3.940 7 C -0.233 4.233 8 C -0.105 4.105 9 C -0.175 4.175 10 C -0.104 4.104 11 C -0.142 4.142 12 C -0.161 4.161 13 C 0.283 3.717 14 O -0.468 6.468 15 N -0.345 5.345 16 C 0.168 3.832 17 H 0.014 0.986 18 C -0.193 4.193 19 C -0.585 4.585 20 H 0.096 0.904 21 C -0.186 4.186 22 N -0.557 5.557 23 Si 0.799 3.201 24 H -0.195 1.195 25 H -0.214 1.214 26 H -0.186 1.186 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.159 0.841 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.244 0.756 40 H 0.064 0.936 41 H 0.028 0.972 42 H 0.086 0.914 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.955 1.781 -3.726 22.340 hybrid contribution 0.885 -0.133 0.943 1.300 sum -21.070 1.648 -2.783 21.317 Atomic orbital electron populations 1.21884 0.92586 1.03350 1.02458 1.21988 0.98648 0.92186 1.04226 1.22425 0.90683 0.96914 0.88544 0.86140 1.86186 1.38232 1.63287 1.34268 1.19258 0.86072 0.93336 0.95354 1.21511 0.98600 1.05945 0.97210 1.21271 0.94720 0.94907 0.99570 1.21414 1.01652 1.01979 0.92444 1.21178 0.92466 0.96942 0.99797 1.19569 0.98320 1.02045 0.94246 1.20585 0.98504 1.02882 0.94099 1.20955 0.90506 0.77574 0.82646 1.90660 1.66514 1.48791 1.40838 1.46153 1.09109 1.62277 1.16949 1.18389 0.75342 0.93584 0.95883 0.98614 1.21903 1.03065 0.98352 0.95954 1.21529 0.93024 1.52624 0.91300 0.90437 1.25836 0.96213 0.94036 1.02562 1.70064 1.00844 1.49915 1.34853 0.85302 0.77529 0.78506 0.78737 1.19501 1.21412 1.18628 0.93439 0.90583 0.90485 0.88038 0.91909 0.84102 0.83158 0.83164 0.83238 0.90973 0.89867 0.93921 0.75617 0.93605 0.97201 0.91394 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.45 71.98 0.61 -2.07 16 2 C -0.13 -3.19 5.61 30.60 0.17 -3.02 16 3 C 0.07 2.27 2.57 29.85 0.08 2.34 16 4 H 0.12 3.03 5.37 -2.39 -0.01 3.02 16 5 O -0.31 -10.50 8.25 -73.50 -0.61 -11.11 16 6 C 0.10 2.95 5.30 22.51 0.12 3.07 16 7 C -0.21 -4.75 7.16 22.36 0.16 -4.59 16 8 C -0.09 -1.51 10.04 22.25 0.22 -1.29 16 9 C -0.16 -2.57 10.04 22.28 0.22 -2.35 16 10 C -0.09 -1.64 9.70 22.26 0.22 -1.43 16 11 C -0.14 -3.60 5.89 -19.77 -0.12 -3.72 16 12 C -0.10 -2.59 9.79 71.24 0.70 -1.89 16 13 C 0.50 20.92 7.14 87.66 0.63 21.54 16 14 O -0.59 -31.30 16.17 15.97 0.26 -31.04 16 15 N -0.69 -28.75 4.97 -446.12 -2.22 -30.96 16 16 C 0.27 14.17 2.56 44.24 0.11 14.28 16 17 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 18 C -0.13 -6.85 9.26 71.98 0.67 -6.18 16 19 C -0.55 -28.62 8.73 25.60 0.22 -28.39 16 20 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 21 C 0.01 0.73 5.30 84.66 0.45 1.18 16 22 N -0.92 -52.82 11.32 21.45 0.24 -52.58 16 23 Si 0.97 41.49 29.54 68.60 2.03 43.52 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 27 H 0.05 1.01 6.27 -2.39 -0.01 1.00 16 28 H 0.08 1.13 6.80 -2.38 -0.02 1.11 16 29 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.10 2.10 7.77 -2.39 -0.02 2.08 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.14 2.70 4.54 -2.91 -0.01 2.69 16 33 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 38 H 0.04 1.33 7.53 -2.39 -0.02 1.31 16 39 H 0.41 13.56 8.24 -92.71 -0.76 12.80 16 40 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 43 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -72.20 348.32 4.41 -67.79 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.25 Total: 26.91 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 4.46 Total: -12.51 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -1.97 Total: -83.54 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.35 Total: -42.16 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -72.20 4.41 -67.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176272322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.223 kcal (2) G-P(sol) polarization free energy of solvation -72.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds