Wall clock time and date at job start Tue Mar 31 2020 06:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46842 * 2 1 4 4 H 1.08994 * 109.47248 * 305.00400 * 3 2 1 5 5 O 1.42903 * 109.46814 * 65.00596 * 3 2 1 6 6 C 1.35903 * 116.99772 * 265.11925 * 5 3 2 7 7 C 1.38751 * 120.05392 * 357.22934 * 6 5 3 8 8 C 1.38126 * 119.93734 * 180.31869 * 7 6 5 9 9 C 1.38278 * 120.06006 * 359.67679 * 8 7 6 10 10 C 1.38244 * 120.11366 * 0.02562 * 9 8 7 11 11 C 1.38166 * 120.05193 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.03129 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47028 * 185.00321 * 3 2 1 14 14 O 1.21281 * 119.99904 * 245.00560 * 13 3 2 15 15 N 1.34773 * 120.00047 * 64.99847 * 13 3 2 16 16 C 1.46502 * 120.00219 * 180.02562 * 15 13 3 17 17 H 1.08996 * 109.47124 * 34.99834 * 16 15 13 18 18 C 1.53003 * 109.46703 * 275.00442 * 16 15 13 19 19 C 1.50697 * 109.47233 * 155.00500 * 16 15 13 20 20 H 1.08003 * 120.00125 * 35.27849 * 19 16 15 21 21 C 1.37873 * 119.99876 * 215.28013 * 19 16 15 22 22 N 1.31514 * 120.00390 * 186.07367 * 21 19 16 23 23 Si 1.86807 * 120.00011 * 6.06707 * 21 19 16 24 24 H 1.48499 * 109.46693 * 85.69254 * 23 21 19 25 25 H 1.48495 * 109.47095 * 205.69156 * 23 21 19 26 26 H 1.48496 * 109.47153 * 325.69359 * 23 21 19 27 27 H 1.08994 * 109.47735 * 59.99954 * 1 2 3 28 28 H 1.09001 * 109.46810 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47045 * 299.99145 * 1 2 3 30 30 H 1.08998 * 109.46831 * 240.00356 * 2 1 3 31 31 H 1.08998 * 109.47568 * 120.00782 * 2 1 3 32 32 H 1.07997 * 120.03280 * 0.02562 * 7 6 5 33 33 H 1.08006 * 119.96827 * 179.70066 * 8 7 6 34 34 H 1.08005 * 119.94527 * 180.02562 * 9 8 7 35 35 H 1.07996 * 119.98046 * 180.02562 * 10 9 8 36 36 H 1.09004 * 109.47273 * 90.00091 * 12 11 10 37 37 H 1.09004 * 109.46836 * 330.00402 * 12 11 10 38 38 H 1.09000 * 109.47720 * 210.00342 * 12 11 10 39 39 H 0.97002 * 120.00093 * 0.02562 * 15 13 3 40 40 H 1.09007 * 109.46928 * 185.38712 * 18 16 15 41 41 H 1.09002 * 109.47126 * 305.38681 * 18 16 15 42 42 H 1.09002 * 109.47294 * 65.39231 * 18 16 15 43 43 H 0.96994 * 120.00607 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 8 1.6620 2.0813 1.2212 6 6 0.5138 2.8083 1.2074 7 6 -0.2034 2.9524 0.0284 8 6 -1.3665 3.6972 0.0158 9 6 -1.8199 4.2935 1.1781 10 6 -1.1104 4.1464 2.3554 11 6 0.0542 3.4032 2.3732 12 6 0.8276 3.2436 3.6567 13 6 3.5419 1.4444 -0.1239 14 8 4.2250 1.8611 0.7875 15 7 4.1259 0.9829 -1.2474 16 6 5.5860 0.9842 -1.3677 17 1 6.0309 0.7765 -0.3946 18 6 6.0558 2.3540 -1.8613 19 6 6.0100 -0.0765 -2.3506 20 1 5.3973 -0.2881 -3.2145 21 6 7.1800 -0.7769 -2.1471 22 7 7.6118 -1.6164 -3.0627 23 14 8.1523 -0.5331 -0.5707 24 1 7.6163 -1.4295 0.4850 25 1 9.5810 -0.8555 -0.8154 26 1 8.0323 0.8794 -0.1285 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 0.1500 2.4865 -0.8796 33 1 -1.9226 3.8137 -0.9028 34 1 -2.7298 4.8752 1.1662 35 1 -1.4666 4.6127 3.2621 36 1 0.4719 2.3607 4.1879 37 1 0.6826 4.1257 4.2804 38 1 1.8877 3.1289 3.4305 39 1 3.5796 0.6499 -1.9765 40 1 7.1304 2.3261 -2.0423 41 1 5.5378 2.6038 -2.7873 42 1 5.8340 3.1081 -1.1061 43 1 8.4347 -2.1094 -2.9193 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176272340.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:25 Heat of formation + Delta-G solvation = -59.970889 kcal Electronic energy + Delta-G solvation = -23628.760508 eV Core-core repulsion = 20253.004014 eV Total energy + Delta-G solvation = -3375.756494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.73087 -39.02926 -37.34935 -34.89639 -33.94119 -32.62444 -32.27165 -30.33714 -29.87879 -27.35233 -26.62297 -25.34567 -23.16733 -22.10146 -21.61825 -20.55369 -19.59344 -18.26216 -17.68845 -16.40172 -15.91109 -15.75506 -15.60506 -15.23094 -14.55496 -14.23059 -14.06585 -13.87509 -13.49513 -13.32655 -13.19934 -12.68363 -12.55930 -12.44836 -12.33657 -12.21910 -12.00350 -11.83881 -11.50417 -11.43807 -11.24530 -11.12691 -10.96516 -10.88643 -10.64587 -10.45900 -9.89995 -9.25552 -9.14599 -8.90247 -8.72725 -8.18294 -8.09554 -6.27847 -4.31860 1.21701 1.36545 2.91854 3.10789 3.25111 3.32339 3.40114 3.65100 4.04216 4.29420 4.58072 4.71257 4.78134 4.80808 4.94743 5.04357 5.11329 5.18750 5.19288 5.33094 5.45935 5.51378 5.60190 5.62855 5.69786 5.78770 5.88622 5.99637 6.16098 6.19728 6.26081 6.28406 6.38649 6.44365 6.49953 6.64058 6.70588 6.88811 7.11947 7.29786 7.40980 7.49212 8.06753 8.48116 8.71933 8.86898 9.34010 10.83617 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026125 B = 0.003815 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.516747 B = 7337.942605 C = 7624.158114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.139 4.139 3 C 0.062 3.938 4 H 0.098 0.902 5 O -0.277 6.277 6 C 0.137 3.863 7 C -0.210 4.210 8 C -0.086 4.086 9 C -0.161 4.161 10 C -0.085 4.085 11 C -0.119 4.119 12 C -0.108 4.108 13 C 0.502 3.498 14 O -0.536 6.536 15 N -0.699 5.699 16 C 0.232 3.768 17 H 0.052 0.948 18 C -0.148 4.148 19 C -0.531 4.531 20 H 0.079 0.921 21 C 0.082 3.918 22 N -0.887 5.887 23 Si 0.873 3.127 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.260 1.260 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.393 0.607 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.029 0.971 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.721 8.006 6.817 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.177 4.177 3 C 0.002 3.998 4 H 0.115 0.885 5 O -0.189 6.189 6 C 0.091 3.909 7 C -0.228 4.228 8 C -0.104 4.104 9 C -0.180 4.180 10 C -0.103 4.103 11 C -0.119 4.119 12 C -0.164 4.164 13 C 0.286 3.714 14 O -0.413 6.413 15 N -0.349 5.349 16 C 0.130 3.870 17 H 0.070 0.930 18 C -0.207 4.207 19 C -0.569 4.569 20 H 0.097 0.903 21 C -0.122 4.122 22 N -0.523 5.523 23 Si 0.699 3.301 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.184 1.184 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.227 0.773 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.887 8.125 7.573 21.055 hybrid contribution 0.204 -0.182 0.038 0.276 sum -17.684 7.943 7.611 20.826 Atomic orbital electron populations 1.21919 0.94815 1.02275 1.02103 1.21994 0.96847 0.94238 1.04655 1.22528 0.94690 0.94913 0.87655 0.88484 1.86230 1.37174 1.61735 1.33779 1.18931 0.86234 0.91965 0.93743 1.21338 0.98388 1.05407 0.97707 1.20884 0.95377 0.95913 0.98205 1.20987 1.01107 1.02867 0.93009 1.20859 0.93624 0.97564 0.98234 1.19285 0.97264 1.01155 0.94219 1.20633 1.00772 1.01589 0.93431 1.20134 0.88350 0.79168 0.83790 1.90679 1.64637 1.46764 1.39265 1.46619 1.09986 1.61845 1.16462 1.19189 0.75819 0.94186 0.97831 0.93025 1.22231 1.01146 0.97920 0.99421 1.20978 1.08222 1.18876 1.08853 0.90271 1.24932 0.96900 0.93997 0.96401 1.69876 1.22484 1.26306 1.33625 0.86908 0.79255 0.79960 0.83967 1.19784 1.21092 1.18410 0.92406 0.92052 0.92295 0.89239 0.90101 0.85028 0.85995 0.86180 0.85649 0.91522 0.91923 0.90538 0.77328 0.92500 0.93596 0.95194 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.48 37.16 0.32 -1.30 16 2 C -0.14 -1.78 5.61 -26.73 -0.15 -1.93 16 3 C 0.06 0.92 2.57 -27.88 -0.07 0.85 16 4 H 0.10 1.22 5.32 -51.93 -0.28 0.94 16 5 O -0.28 -4.46 8.23 -39.30 -0.32 -4.78 16 6 C 0.14 1.89 5.30 -39.22 -0.21 1.68 16 7 C -0.21 -2.44 7.26 -39.43 -0.29 -2.73 16 8 C -0.09 -0.86 10.04 -39.61 -0.40 -1.26 16 9 C -0.16 -1.55 10.04 -39.56 -0.40 -1.95 16 10 C -0.08 -0.88 9.70 -39.61 -0.38 -1.26 16 11 C -0.12 -1.49 5.89 -104.47 -0.62 -2.10 16 12 C -0.11 -1.26 9.80 36.01 0.35 -0.90 16 13 C 0.50 9.79 7.14 -10.99 -0.08 9.71 16 14 O -0.54 -12.76 16.17 -14.30 -0.23 -12.99 16 15 N -0.70 -13.73 4.97 -54.93 -0.27 -14.00 16 16 C 0.23 5.45 2.25 -69.08 -0.16 5.30 16 17 H 0.05 1.34 4.64 -51.93 -0.24 1.10 16 18 C -0.15 -3.24 9.47 37.16 0.35 -2.89 16 19 C -0.53 -13.99 9.04 -34.44 -0.31 -14.30 16 20 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 21 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 22 N -0.89 -25.72 13.96 55.43 0.77 -24.94 16 23 Si 0.87 21.41 27.05 -169.99 -4.60 16.81 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.26 -6.33 6.73 56.52 0.38 -5.95 16 27 H 0.06 0.53 6.90 -51.93 -0.36 0.17 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.67 6.34 -51.93 -0.33 0.35 16 30 H 0.09 1.07 7.77 -51.93 -0.40 0.67 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.13 1.37 4.63 -52.49 -0.24 1.13 16 33 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.08 1.06 7.52 -51.93 -0.39 0.67 16 39 H 0.39 6.60 8.30 -40.82 -0.34 6.26 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -31.90 348.28 -7.92 -39.83 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.38 Total: 5.72 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -2.13 Total: -10.90 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.50 Total: -38.94 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.55 Total: -17.77 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.60 Total: 16.81 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.90 -7.92 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176272340.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.145 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds