Wall clock time and date at job start Tue Mar 31 2020 06:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46842 * 2 1 4 4 H 1.08994 * 109.47248 * 305.00400 * 3 2 1 5 5 O 1.42903 * 109.46814 * 65.00596 * 3 2 1 6 6 C 1.35903 * 116.99772 * 265.11925 * 5 3 2 7 7 C 1.38751 * 120.05392 * 357.22934 * 6 5 3 8 8 C 1.38126 * 119.93734 * 180.31869 * 7 6 5 9 9 C 1.38278 * 120.06006 * 359.67679 * 8 7 6 10 10 C 1.38244 * 120.11366 * 0.02562 * 9 8 7 11 11 C 1.38166 * 120.05193 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.03129 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47028 * 185.00321 * 3 2 1 14 14 O 1.21281 * 119.99904 * 245.00560 * 13 3 2 15 15 N 1.34773 * 120.00047 * 64.99847 * 13 3 2 16 16 C 1.46502 * 120.00219 * 180.02562 * 15 13 3 17 17 H 1.08996 * 109.47124 * 34.99834 * 16 15 13 18 18 C 1.53003 * 109.46703 * 275.00442 * 16 15 13 19 19 C 1.50697 * 109.47233 * 155.00500 * 16 15 13 20 20 H 1.08003 * 120.00125 * 35.27849 * 19 16 15 21 21 C 1.37873 * 119.99876 * 215.28013 * 19 16 15 22 22 N 1.31514 * 120.00390 * 186.07367 * 21 19 16 23 23 Si 1.86807 * 120.00011 * 6.06707 * 21 19 16 24 24 H 1.48499 * 109.46693 * 85.69254 * 23 21 19 25 25 H 1.48495 * 109.47095 * 205.69156 * 23 21 19 26 26 H 1.48496 * 109.47153 * 325.69359 * 23 21 19 27 27 H 1.08994 * 109.47735 * 59.99954 * 1 2 3 28 28 H 1.09001 * 109.46810 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47045 * 299.99145 * 1 2 3 30 30 H 1.08998 * 109.46831 * 240.00356 * 2 1 3 31 31 H 1.08998 * 109.47568 * 120.00782 * 2 1 3 32 32 H 1.07997 * 120.03280 * 0.02562 * 7 6 5 33 33 H 1.08006 * 119.96827 * 179.70066 * 8 7 6 34 34 H 1.08005 * 119.94527 * 180.02562 * 9 8 7 35 35 H 1.07996 * 119.98046 * 180.02562 * 10 9 8 36 36 H 1.09004 * 109.47273 * 90.00091 * 12 11 10 37 37 H 1.09004 * 109.46836 * 330.00402 * 12 11 10 38 38 H 1.09000 * 109.47720 * 210.00342 * 12 11 10 39 39 H 0.97002 * 120.00093 * 0.02562 * 15 13 3 40 40 H 1.09007 * 109.46928 * 185.38712 * 18 16 15 41 41 H 1.09002 * 109.47126 * 305.38681 * 18 16 15 42 42 H 1.09002 * 109.47294 * 65.39231 * 18 16 15 43 43 H 0.96994 * 120.00607 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 8 1.6620 2.0813 1.2212 6 6 0.5138 2.8083 1.2074 7 6 -0.2034 2.9524 0.0284 8 6 -1.3665 3.6972 0.0158 9 6 -1.8199 4.2935 1.1781 10 6 -1.1104 4.1464 2.3554 11 6 0.0542 3.4032 2.3732 12 6 0.8276 3.2436 3.6567 13 6 3.5419 1.4444 -0.1239 14 8 4.2250 1.8611 0.7875 15 7 4.1259 0.9829 -1.2474 16 6 5.5860 0.9842 -1.3677 17 1 6.0309 0.7765 -0.3946 18 6 6.0558 2.3540 -1.8613 19 6 6.0100 -0.0765 -2.3506 20 1 5.3973 -0.2881 -3.2145 21 6 7.1800 -0.7769 -2.1471 22 7 7.6118 -1.6164 -3.0627 23 14 8.1523 -0.5331 -0.5707 24 1 7.6163 -1.4295 0.4850 25 1 9.5810 -0.8555 -0.8154 26 1 8.0323 0.8794 -0.1285 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 0.1500 2.4865 -0.8796 33 1 -1.9226 3.8137 -0.9028 34 1 -2.7298 4.8752 1.1662 35 1 -1.4666 4.6127 3.2621 36 1 0.4719 2.3607 4.1879 37 1 0.6826 4.1257 4.2804 38 1 1.8877 3.1289 3.4305 39 1 3.5796 0.6499 -1.9765 40 1 7.1304 2.3261 -2.0423 41 1 5.5378 2.6038 -2.7873 42 1 5.8340 3.1081 -1.1061 43 1 8.4347 -2.1094 -2.9193 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176272340.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:25 Heat of formation + Delta-G solvation = -79.033214 kcal Electronic energy + Delta-G solvation = -23629.587112 eV Core-core repulsion = 20253.004014 eV Total energy + Delta-G solvation = -3376.583098 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.82321 -40.41287 -38.43149 -36.72353 -35.04801 -34.29363 -33.41918 -31.73890 -31.04628 -28.47293 -27.54386 -27.34355 -24.07459 -23.51561 -22.48958 -21.99923 -21.17649 -19.40725 -19.25496 -18.06405 -17.26729 -16.84099 -16.78609 -16.40255 -15.97744 -15.60563 -15.38361 -15.00812 -14.77820 -14.58566 -14.49000 -14.26217 -14.01014 -13.60952 -13.38062 -13.23871 -13.17175 -13.05669 -12.95894 -12.86196 -12.78845 -12.49768 -12.29682 -12.09190 -11.93152 -11.87942 -11.42925 -11.27297 -10.86453 -10.68953 -9.91612 -9.71257 -9.01743 -8.41335 -6.47049 0.41099 0.52110 1.26437 1.32316 1.42682 1.57045 1.73642 2.24850 2.66195 2.85130 3.00902 3.55405 3.67676 3.75990 3.90094 3.99157 4.17769 4.25240 4.36965 4.43909 4.44564 4.50129 4.67083 4.70183 4.74475 4.77788 4.78610 4.79267 4.99728 5.00411 5.05424 5.06754 5.29441 5.32255 5.32364 5.41338 5.45221 5.56170 5.63662 5.65713 5.90108 6.08807 6.43145 6.57587 6.79572 7.17934 7.34071 8.73273 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026125 B = 0.003815 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.516747 B = 7337.942605 C = 7624.158114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.073 3.927 4 H 0.125 0.875 5 O -0.305 6.305 6 C 0.106 3.894 7 C -0.214 4.214 8 C -0.087 4.087 9 C -0.157 4.157 10 C -0.086 4.086 11 C -0.141 4.141 12 C -0.104 4.104 13 C 0.500 3.500 14 O -0.584 6.584 15 N -0.693 5.693 16 C 0.233 3.767 17 H 0.029 0.971 18 C -0.142 4.142 19 C -0.524 4.524 20 H 0.063 0.937 21 C 0.038 3.962 22 N -0.925 5.925 23 Si 0.921 3.079 24 H -0.275 1.275 25 H -0.275 1.275 26 H -0.260 1.260 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.409 0.591 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.031 0.969 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.414 9.242 6.694 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.013 3.987 4 H 0.142 0.858 5 O -0.218 6.218 6 C 0.061 3.939 7 C -0.233 4.233 8 C -0.105 4.105 9 C -0.175 4.175 10 C -0.104 4.104 11 C -0.141 4.141 12 C -0.161 4.161 13 C 0.285 3.715 14 O -0.464 6.464 15 N -0.344 5.344 16 C 0.130 3.870 17 H 0.047 0.953 18 C -0.201 4.201 19 C -0.563 4.563 20 H 0.081 0.919 21 C -0.163 4.163 22 N -0.564 5.564 23 Si 0.746 3.254 24 H -0.201 1.201 25 H -0.201 1.201 26 H -0.185 1.185 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.159 0.841 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.245 0.755 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.616 9.362 7.435 23.832 hybrid contribution 0.909 -0.491 0.081 1.037 sum -19.707 8.870 7.515 22.881 Atomic orbital electron populations 1.21857 0.92590 1.03247 1.02496 1.21999 0.98688 0.92566 1.04120 1.22421 0.90873 0.96625 0.88731 0.85761 1.86187 1.38827 1.62692 1.34101 1.19236 0.86247 0.93171 0.95239 1.21495 0.98837 1.05767 0.97174 1.21269 0.94746 0.94848 0.99590 1.21407 1.01652 1.02059 0.92405 1.21177 0.92701 0.96774 0.99750 1.19561 0.98418 1.02049 0.94092 1.20587 0.98737 1.02784 0.93960 1.20928 0.90486 0.77556 0.82494 1.90651 1.66310 1.48718 1.40747 1.46298 1.08710 1.62024 1.17395 1.18951 0.77952 0.94276 0.95820 0.95337 1.22127 1.00980 0.96787 1.00203 1.21134 1.07622 1.18926 1.08590 0.91901 1.25526 0.98047 0.94169 0.98563 1.69957 1.23385 1.27807 1.35211 0.86142 0.78634 0.79637 0.80989 1.20073 1.20059 1.18465 0.90518 0.90778 0.93322 0.88358 0.92048 0.84094 0.83220 0.83250 0.83294 0.91111 0.89889 0.93722 0.75516 0.93036 0.91861 0.94952 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.48 71.98 0.61 -2.12 16 2 C -0.14 -3.34 5.61 30.60 0.17 -3.16 16 3 C 0.07 2.13 2.57 29.85 0.08 2.20 16 4 H 0.13 2.87 5.32 -2.39 -0.01 2.86 16 5 O -0.30 -9.89 8.23 -73.47 -0.60 -10.50 16 6 C 0.11 2.82 5.30 22.51 0.12 2.94 16 7 C -0.21 -4.48 7.26 22.37 0.16 -4.32 16 8 C -0.09 -1.42 10.04 22.25 0.22 -1.20 16 9 C -0.16 -2.44 10.04 22.28 0.22 -2.21 16 10 C -0.09 -1.56 9.70 22.25 0.22 -1.34 16 11 C -0.14 -3.39 5.89 -19.77 -0.12 -3.51 16 12 C -0.10 -2.44 9.80 71.24 0.70 -1.74 16 13 C 0.50 19.54 7.14 87.66 0.63 20.16 16 14 O -0.58 -28.47 16.17 15.96 0.26 -28.22 16 15 N -0.69 -26.97 4.97 -446.10 -2.22 -29.19 16 16 C 0.23 10.99 2.25 44.24 0.10 11.09 16 17 H 0.03 1.49 4.64 -2.39 -0.01 1.48 16 18 C -0.14 -6.12 9.47 71.98 0.68 -5.44 16 19 C -0.52 -27.74 9.04 25.60 0.23 -27.51 16 20 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 21 C 0.04 2.11 5.47 84.65 0.46 2.57 16 22 N -0.93 -54.21 13.96 21.45 0.30 -53.91 16 23 Si 0.92 44.60 27.05 68.60 1.86 46.45 16 24 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.26 -12.52 6.73 99.48 0.67 -11.85 16 27 H 0.08 1.15 6.90 -2.39 -0.02 1.14 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.05 1.04 6.34 -2.39 -0.02 1.02 16 30 H 0.10 2.21 7.77 -2.39 -0.02 2.19 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.14 2.52 4.63 -2.91 -0.01 2.51 16 33 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.08 1.52 8.09 -2.38 -0.02 1.50 16 38 H 0.04 1.31 7.52 -2.39 -0.02 1.29 16 39 H 0.41 13.30 8.30 -92.71 -0.77 12.53 16 40 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -70.37 348.28 4.29 -66.09 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.21 Total: 22.86 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 4.49 Total: -13.59 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -1.92 Total: -83.10 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -0.35 Total: -38.71 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.86 Total: 46.45 kcal Total: -70.37 4.29 -66.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176272340.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.946 kcal (2) G-P(sol) polarization free energy of solvation -70.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds