Wall clock time and date at job start Tue Mar 31 2020 06:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47076 * 2 1 4 4 N 1.46496 * 109.46977 * 180.02562 * 3 2 1 5 5 C 1.36933 * 120.00135 * 269.99658 * 4 3 2 6 6 H 1.08004 * 119.99825 * 38.13374 * 5 4 3 7 7 C 1.38813 * 120.00018 * 218.13053 * 5 4 3 8 8 N 1.31613 * 120.00072 * 21.28764 * 7 5 4 9 9 Si 1.86804 * 119.99795 * 201.28470 * 7 5 4 10 10 H 1.48501 * 109.47105 * 90.00434 * 9 7 5 11 11 H 1.48504 * 109.46667 * 210.00091 * 9 7 5 12 12 H 1.48495 * 109.47352 * 329.99913 * 9 7 5 13 13 C 1.46504 * 119.99822 * 90.00312 * 4 3 2 14 14 C 1.52998 * 109.47036 * 264.49567 * 13 4 3 15 15 C 1.50703 * 109.47264 * 179.97438 * 14 13 4 16 16 O 1.20822 * 119.99767 * 0.02562 * 15 14 13 17 17 O 1.34229 * 120.00202 * 179.97438 * 15 14 13 18 18 C 1.45198 * 117.00255 * 180.02562 * 17 15 14 19 19 C 1.50694 * 109.47099 * 180.02562 * 18 17 15 20 20 C 1.38231 * 120.00131 * 90.00361 * 19 18 17 21 21 C 1.38236 * 120.00578 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99266 * 359.97438 * 21 20 19 23 23 C 1.38239 * 120.00435 * 0.27439 * 22 21 20 24 24 C 1.38232 * 119.99947 * 269.97387 * 19 18 17 25 25 H 1.08995 * 109.47232 * 299.99580 * 1 2 3 26 26 H 1.09000 * 109.47400 * 60.00195 * 1 2 3 27 27 H 1.09008 * 109.46885 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47047 * 240.00037 * 2 1 3 29 29 H 1.09000 * 109.47400 * 119.99805 * 2 1 3 30 30 H 1.08995 * 109.46747 * 60.00123 * 3 2 1 31 31 H 1.09000 * 109.46847 * 300.00144 * 3 2 1 32 32 H 0.96998 * 120.00240 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47049 * 144.49765 * 13 4 3 34 34 H 1.08997 * 109.47069 * 24.49930 * 13 4 3 35 35 H 1.08997 * 109.47040 * 60.00192 * 14 13 4 36 36 H 1.08997 * 109.47488 * 300.00106 * 14 13 4 37 37 H 1.09003 * 109.47083 * 60.00508 * 18 17 15 38 38 H 1.09006 * 109.47046 * 300.00984 * 18 17 15 39 39 H 1.08009 * 119.99877 * 359.97438 * 20 19 18 40 40 H 1.07995 * 120.00596 * 180.02562 * 21 20 19 41 41 H 1.08007 * 119.99723 * 179.97438 * 22 21 20 42 42 H 1.07994 * 120.00150 * 179.71997 * 23 22 21 43 43 H 1.08004 * 120.00120 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 3.8233 0.8648 2.0206 7 6 5.3561 2.1847 1.3128 8 7 5.5891 3.1900 0.4959 9 14 6.5945 1.7566 2.6442 10 1 7.5730 0.7740 2.1127 11 1 7.3095 2.9869 3.0691 12 1 5.8856 1.1688 3.8091 13 6 4.2369 1.4428 -1.2697 14 6 4.6115 0.0070 -1.6426 15 6 5.3639 0.0072 -2.9484 16 8 5.5788 1.0488 -3.5216 17 8 5.7961 -1.1498 -3.4741 18 6 6.5141 -1.0740 -4.7338 19 6 6.9174 -2.4601 -5.1663 20 6 6.0702 -3.2104 -5.9601 21 6 6.4403 -4.4817 -6.3573 22 6 7.6580 -5.0024 -5.9611 23 6 8.5031 -4.2540 -5.1631 24 6 8.1349 -2.9810 -4.7698 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 6.4041 3.7085 0.5850 33 1 5.1431 2.0395 -1.1663 34 1 3.6083 1.8691 -2.0515 35 1 3.7052 -0.5897 -1.7460 36 1 5.2400 -0.4193 -0.8608 37 1 7.4051 -0.4587 -4.6078 38 1 5.8702 -0.6297 -5.4929 39 1 5.1189 -2.8033 -6.2699 40 1 5.7785 -5.0677 -6.9777 41 1 7.9471 -5.9958 -6.2711 42 1 9.4524 -4.6626 -4.8499 43 1 8.7969 -2.3947 -4.1497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181460823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:09 Heat of formation + Delta-G solvation = -56.042946 kcal Electronic energy + Delta-G solvation = -22713.860268 eV Core-core repulsion = 19338.274103 eV Total energy + Delta-G solvation = -3375.586165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.14668 -39.16922 -36.56439 -35.85569 -33.01659 -32.30565 -31.36755 -31.09828 -29.69876 -26.66663 -25.55277 -24.29163 -22.77649 -21.92934 -21.32366 -20.21423 -19.84825 -17.33943 -17.12559 -16.50687 -16.27123 -15.88231 -15.15579 -14.96982 -14.81102 -14.33595 -13.91870 -13.61556 -13.38656 -13.12841 -13.08944 -12.87343 -12.77627 -12.25180 -12.02174 -11.60232 -11.46777 -11.27486 -11.23511 -11.14208 -10.90219 -10.75677 -10.47439 -10.40886 -10.32489 -10.09741 -9.94570 -9.68914 -9.57502 -9.11141 -9.00792 -8.49081 -6.58929 -5.77281 -3.40881 1.02774 1.21266 2.77018 3.06605 3.36055 3.43990 3.44806 3.75244 4.46683 4.57714 4.63812 4.80284 4.92378 5.11317 5.20234 5.29693 5.35189 5.44166 5.46562 5.61063 5.66560 5.75787 5.78870 5.84621 5.95762 6.04770 6.21640 6.23455 6.29257 6.29595 6.40846 6.42438 6.49882 6.61935 6.64678 6.77384 6.83482 6.96888 7.01485 7.15993 7.73274 7.85083 8.27954 8.52350 9.17718 9.79797 10.38506 11.20411 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.003742 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.162157 B = 7480.082879 C = 8568.928939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.145 3.855 4 N -0.582 5.582 5 C -0.269 4.269 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.880 5.880 9 Si 0.895 3.105 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.157 3.843 14 C -0.129 4.129 15 C 0.462 3.538 16 O -0.508 6.508 17 O -0.360 6.360 18 C 0.104 3.896 19 C -0.090 4.090 20 C -0.097 4.097 21 C -0.125 4.125 22 C -0.115 4.115 23 C -0.124 4.124 24 C -0.096 4.096 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.256 0.744 33 H 0.102 0.898 34 H 0.034 0.966 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.778 -13.753 -11.764 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.019 3.981 4 N -0.301 5.301 5 C -0.398 4.398 6 H 0.080 0.920 7 C -0.186 4.186 8 N -0.521 5.521 9 Si 0.724 3.276 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.029 3.971 14 C -0.169 4.169 15 C 0.306 3.694 16 O -0.395 6.395 17 O -0.278 6.278 18 C 0.030 3.970 19 C -0.090 4.090 20 C -0.115 4.115 21 C -0.143 4.143 22 C -0.133 4.133 23 C -0.142 4.142 24 C -0.114 4.114 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.983 -13.259 -11.946 17.874 hybrid contribution 0.828 -0.295 0.511 1.017 sum 1.811 -13.554 -11.435 17.826 Atomic orbital electron populations 1.21727 0.97329 1.00351 1.01115 1.22200 0.93864 1.01100 1.01299 1.20964 0.85280 0.92805 0.99082 1.43769 0.99404 1.84827 1.02079 1.19016 1.06256 1.23104 0.91471 0.92029 1.25246 1.00889 0.94622 0.97835 1.69987 1.25846 1.16849 1.39450 0.86423 0.81717 0.77594 0.81856 1.21244 1.21663 1.20125 1.20796 1.00011 0.90038 0.86216 1.22494 0.99127 1.05871 0.89436 1.24608 0.76474 0.80904 0.87456 1.90630 1.54211 1.33012 1.61695 1.86654 1.67271 1.36781 1.37098 1.21709 0.96845 0.93704 0.84757 1.19612 0.95075 0.95567 0.98760 1.21114 0.98904 0.94267 0.97218 1.21146 0.96885 0.95639 1.00596 1.21211 0.94463 0.99758 0.97872 1.21161 1.00000 0.94491 0.98531 1.21148 0.96163 0.95689 0.98411 0.93165 0.93413 0.93847 0.93143 0.92359 0.93276 0.94920 0.93385 0.88030 0.94745 0.89503 0.88082 0.90512 0.90601 0.85776 0.85845 0.86007 0.85809 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.15 0.37 -1.73 16 2 C -0.14 -2.53 6.26 -26.73 -0.17 -2.70 16 3 C 0.15 3.02 5.71 -4.04 -0.02 3.00 16 4 N -0.58 -14.23 2.43 -173.24 -0.42 -14.65 16 5 C -0.27 -7.18 9.42 -15.06 -0.14 -7.32 16 6 H 0.06 1.64 7.92 -52.48 -0.42 1.22 16 7 C 0.02 0.42 5.00 -17.43 -0.09 0.33 16 8 N -0.88 -25.46 11.43 55.49 0.63 -24.83 16 9 Si 0.89 21.32 29.60 -169.99 -5.03 16.29 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.16 3.72 4.67 -4.04 -0.02 3.70 16 14 C -0.13 -2.59 6.10 -27.88 -0.17 -2.76 16 15 C 0.46 9.00 7.96 36.01 0.29 9.29 16 16 O -0.51 -11.12 15.73 -18.75 -0.29 -11.41 16 17 O -0.36 -6.14 10.20 -39.25 -0.40 -6.54 16 18 C 0.10 1.46 5.59 36.00 0.20 1.66 16 19 C -0.09 -1.11 5.52 -104.63 -0.58 -1.69 16 20 C -0.10 -1.06 9.70 -39.58 -0.38 -1.44 16 21 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 22 C -0.11 -1.03 10.05 -39.58 -0.40 -1.43 16 23 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 24 C -0.10 -1.09 9.70 -39.58 -0.38 -1.48 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.05 0.87 6.65 -51.93 -0.35 0.52 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 31 H 0.03 0.66 7.86 -51.93 -0.41 0.25 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.10 2.80 5.49 -51.93 -0.28 2.52 16 34 H 0.03 0.80 7.79 -51.93 -0.40 0.40 16 35 H 0.09 1.58 6.65 -51.93 -0.35 1.23 16 36 H 0.10 2.10 8.14 -51.93 -0.42 1.68 16 37 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 38 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 39 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -30.49 362.27 -9.17 -39.66 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.82 Total: 1.77 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.29 Total: -5.74 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.21 Total: -39.48 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.70 Total: -17.95 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.49 -9.17 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181460823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.387 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds