Wall clock time and date at job start Tue Mar 31 2020 06:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47076 * 2 1 4 4 N 1.46496 * 109.46977 * 180.02562 * 3 2 1 5 5 C 1.36933 * 120.00135 * 269.99658 * 4 3 2 6 6 H 1.08004 * 119.99825 * 38.13374 * 5 4 3 7 7 C 1.38813 * 120.00018 * 218.13053 * 5 4 3 8 8 N 1.31613 * 120.00072 * 21.28764 * 7 5 4 9 9 Si 1.86804 * 119.99795 * 201.28470 * 7 5 4 10 10 H 1.48501 * 109.47105 * 90.00434 * 9 7 5 11 11 H 1.48504 * 109.46667 * 210.00091 * 9 7 5 12 12 H 1.48495 * 109.47352 * 329.99913 * 9 7 5 13 13 C 1.46504 * 119.99822 * 90.00312 * 4 3 2 14 14 C 1.52998 * 109.47036 * 264.49567 * 13 4 3 15 15 C 1.50703 * 109.47264 * 179.97438 * 14 13 4 16 16 O 1.20822 * 119.99767 * 0.02562 * 15 14 13 17 17 O 1.34229 * 120.00202 * 179.97438 * 15 14 13 18 18 C 1.45198 * 117.00255 * 180.02562 * 17 15 14 19 19 C 1.50694 * 109.47099 * 180.02562 * 18 17 15 20 20 C 1.38231 * 120.00131 * 90.00361 * 19 18 17 21 21 C 1.38236 * 120.00578 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99266 * 359.97438 * 21 20 19 23 23 C 1.38239 * 120.00435 * 0.27439 * 22 21 20 24 24 C 1.38232 * 119.99947 * 269.97387 * 19 18 17 25 25 H 1.08995 * 109.47232 * 299.99580 * 1 2 3 26 26 H 1.09000 * 109.47400 * 60.00195 * 1 2 3 27 27 H 1.09008 * 109.46885 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47047 * 240.00037 * 2 1 3 29 29 H 1.09000 * 109.47400 * 119.99805 * 2 1 3 30 30 H 1.08995 * 109.46747 * 60.00123 * 3 2 1 31 31 H 1.09000 * 109.46847 * 300.00144 * 3 2 1 32 32 H 0.96998 * 120.00240 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47049 * 144.49765 * 13 4 3 34 34 H 1.08997 * 109.47069 * 24.49930 * 13 4 3 35 35 H 1.08997 * 109.47040 * 60.00192 * 14 13 4 36 36 H 1.08997 * 109.47488 * 300.00106 * 14 13 4 37 37 H 1.09003 * 109.47083 * 60.00508 * 18 17 15 38 38 H 1.09006 * 109.47046 * 300.00984 * 18 17 15 39 39 H 1.08009 * 119.99877 * 359.97438 * 20 19 18 40 40 H 1.07995 * 120.00596 * 180.02562 * 21 20 19 41 41 H 1.08007 * 119.99723 * 179.97438 * 22 21 20 42 42 H 1.07994 * 120.00150 * 179.71997 * 23 22 21 43 43 H 1.08004 * 120.00120 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 3.8233 0.8648 2.0206 7 6 5.3561 2.1847 1.3128 8 7 5.5891 3.1900 0.4959 9 14 6.5945 1.7566 2.6442 10 1 7.5730 0.7740 2.1127 11 1 7.3095 2.9869 3.0691 12 1 5.8856 1.1688 3.8091 13 6 4.2369 1.4428 -1.2697 14 6 4.6115 0.0070 -1.6426 15 6 5.3639 0.0072 -2.9484 16 8 5.5788 1.0488 -3.5216 17 8 5.7961 -1.1498 -3.4741 18 6 6.5141 -1.0740 -4.7338 19 6 6.9174 -2.4601 -5.1663 20 6 6.0702 -3.2104 -5.9601 21 6 6.4403 -4.4817 -6.3573 22 6 7.6580 -5.0024 -5.9611 23 6 8.5031 -4.2540 -5.1631 24 6 8.1349 -2.9810 -4.7698 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 6.4041 3.7085 0.5850 33 1 5.1431 2.0395 -1.1663 34 1 3.6083 1.8691 -2.0515 35 1 3.7052 -0.5897 -1.7460 36 1 5.2400 -0.4193 -0.8608 37 1 7.4051 -0.4587 -4.6078 38 1 5.8702 -0.6297 -5.4929 39 1 5.1189 -2.8033 -6.2699 40 1 5.7785 -5.0677 -6.9777 41 1 7.9471 -5.9958 -6.2711 42 1 9.4524 -4.6626 -4.8499 43 1 8.7969 -2.3947 -4.1497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181460823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:09 Heat of formation + Delta-G solvation = -70.102540 kcal Electronic energy + Delta-G solvation = -22714.469938 eV Core-core repulsion = 19338.274103 eV Total energy + Delta-G solvation = -3376.195835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.58230 -40.07567 -38.25056 -37.41766 -34.65180 -33.48579 -33.00195 -31.85603 -31.39098 -27.79870 -27.32896 -25.93481 -23.54275 -23.44967 -22.28298 -21.79357 -21.53293 -19.00297 -18.29534 -18.03428 -17.71159 -17.05154 -16.87140 -16.13285 -16.02384 -15.80940 -15.55459 -14.80088 -14.56212 -14.48879 -14.28779 -14.22151 -13.96017 -13.60997 -13.34752 -13.28678 -12.98370 -12.89065 -12.60259 -12.49691 -12.22638 -12.10385 -12.08240 -11.97805 -11.85591 -11.71669 -11.55369 -11.52582 -11.19688 -10.52727 -9.87974 -9.84644 -8.59047 -7.80996 -5.49907 0.18315 0.44574 1.19410 1.45684 1.48382 1.56801 1.78485 2.50436 2.87637 3.23704 3.54443 3.72767 3.76593 3.97390 4.11005 4.19045 4.22909 4.25164 4.29457 4.36774 4.39000 4.55041 4.58333 4.68095 4.71002 4.77495 4.87521 4.97963 5.02358 5.10113 5.13175 5.24158 5.29867 5.35345 5.48148 5.50423 5.55616 5.57987 5.65722 5.66710 5.81622 6.03430 6.45812 6.75477 7.15137 7.83188 8.37411 9.12454 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.003742 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.162157 B = 7480.082879 C = 8568.928939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C 0.141 3.859 4 N -0.598 5.598 5 C -0.270 4.270 6 H 0.062 0.938 7 C -0.034 4.034 8 N -0.916 5.916 9 Si 0.955 3.045 10 H -0.285 1.285 11 H -0.296 1.296 12 H -0.264 1.264 13 C 0.163 3.837 14 C -0.116 4.116 15 C 0.471 3.529 16 O -0.538 6.538 17 O -0.357 6.357 18 C 0.102 3.898 19 C -0.113 4.113 20 C -0.108 4.108 21 C -0.126 4.126 22 C -0.112 4.112 23 C -0.128 4.128 24 C -0.113 4.113 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.251 0.749 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.314 -16.641 -12.338 20.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.016 3.984 4 N -0.318 5.318 5 C -0.400 4.400 6 H 0.080 0.920 7 C -0.232 4.232 8 N -0.559 5.559 9 Si 0.783 3.217 10 H -0.211 1.211 11 H -0.222 1.222 12 H -0.188 1.188 13 C 0.036 3.964 14 C -0.156 4.156 15 C 0.315 3.685 16 O -0.427 6.427 17 O -0.274 6.274 18 C 0.028 3.972 19 C -0.113 4.113 20 C -0.126 4.126 21 C -0.144 4.144 22 C -0.130 4.130 23 C -0.146 4.146 24 C -0.131 4.131 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.150 0.850 40 H 0.168 0.832 41 H 0.170 0.830 42 H 0.164 0.836 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.495 -16.189 -12.522 20.473 hybrid contribution 0.952 0.537 0.595 1.244 sum 1.447 -15.653 -11.927 19.732 Atomic orbital electron populations 1.21669 0.94522 1.01937 1.01746 1.22004 0.96204 0.98093 1.00931 1.21105 0.83356 0.95197 0.98735 1.43977 1.00873 1.85333 1.01615 1.19248 1.06443 1.22157 0.92142 0.92025 1.25943 1.02651 0.94639 1.00006 1.70137 1.26092 1.18208 1.41509 0.85471 0.79477 0.76940 0.79856 1.21125 1.22224 1.18817 1.20511 0.98214 0.91704 0.86010 1.22144 1.00194 1.03555 0.89708 1.24319 0.76028 0.81046 0.87119 1.90622 1.55408 1.34156 1.62554 1.86615 1.67118 1.35157 1.38524 1.21926 0.96391 0.95497 0.83339 1.19566 0.96219 0.94964 1.00530 1.21319 0.99119 0.95025 0.97142 1.21502 0.97499 0.95068 1.00322 1.21633 0.93883 1.00828 0.96608 1.21474 1.01097 0.93753 0.98279 1.21307 0.96062 0.96769 0.98991 0.92893 0.92505 0.91768 0.92738 0.93447 0.94418 0.94456 0.93995 0.91900 0.95136 0.87091 0.88746 0.90958 0.90042 0.85013 0.83213 0.83022 0.83632 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.13 -4.43 6.26 30.59 0.19 -4.24 16 3 C 0.14 5.85 5.71 86.38 0.49 6.34 16 4 N -0.60 -29.56 2.43 -702.01 -1.71 -31.26 16 5 C -0.27 -14.54 9.42 84.03 0.79 -13.75 16 6 H 0.06 3.27 7.92 -2.91 -0.02 3.25 16 7 C -0.03 -1.91 5.00 84.86 0.42 -1.49 16 8 N -0.92 -54.71 11.43 21.65 0.25 -54.46 16 9 Si 0.95 44.39 29.60 68.60 2.03 46.42 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 13 C 0.16 7.91 4.67 86.38 0.40 8.31 16 14 C -0.12 -4.66 6.10 29.85 0.18 -4.48 16 15 C 0.47 18.49 7.96 71.24 0.57 19.06 16 16 O -0.54 -24.13 15.73 21.98 0.35 -23.78 16 17 O -0.36 -12.13 10.20 -51.40 -0.52 -12.66 16 18 C 0.10 2.89 5.59 71.23 0.40 3.29 16 19 C -0.11 -2.72 5.52 -19.87 -0.11 -2.83 16 20 C -0.11 -2.20 9.70 22.27 0.22 -1.98 16 21 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 22 C -0.11 -1.65 10.05 22.27 0.22 -1.43 16 23 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 24 C -0.11 -2.49 9.70 22.27 0.22 -2.27 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.05 1.77 6.65 -2.39 -0.02 1.75 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.61 8.04 -2.39 -0.02 1.59 16 31 H 0.04 1.49 7.86 -2.39 -0.02 1.47 16 32 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.06 3.62 5.49 -2.39 -0.01 3.60 16 34 H 0.03 1.46 7.79 -2.39 -0.02 1.44 16 35 H 0.11 3.90 6.65 -2.39 -0.02 3.88 16 36 H 0.09 3.94 8.14 -2.39 -0.02 3.92 16 37 H 0.07 2.08 8.08 -2.39 -0.02 2.07 16 38 H 0.08 2.19 8.08 -2.38 -0.02 2.17 16 39 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 43 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -66.71 362.27 6.52 -60.19 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.97 Total: 17.74 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 5.16 Total: -2.18 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -1.46 Total: -85.73 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -0.18 Total: -36.44 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.71 6.52 -60.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181460823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.914 kcal (2) G-P(sol) polarization free energy of solvation -66.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds