Wall clock time and date at job start Tue Mar 31 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46981 * 180.02562 * 16 14 13 18 18 O 1.42901 * 109.46989 * 180.02562 * 17 16 14 19 19 C 1.42897 * 113.99761 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.46913 * 179.97438 * 19 18 17 21 21 C 1.38237 * 119.99839 * 269.72537 * 20 19 18 22 22 C 1.38231 * 119.99870 * 179.76964 * 21 20 19 23 23 C 1.38236 * 119.99954 * 0.50163 * 22 21 20 24 24 C 1.38230 * 120.00147 * 359.74666 * 23 22 21 25 25 C 1.38236 * 120.00017 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 32 32 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 35 35 H 1.08999 * 109.47408 * 300.00136 * 17 16 14 36 36 H 1.08999 * 109.46846 * 60.00007 * 17 16 14 37 37 H 1.09004 * 109.47144 * 299.99471 * 19 18 17 38 38 H 1.08994 * 109.47374 * 59.99800 * 19 18 17 39 39 H 1.08004 * 120.00101 * 359.97438 * 21 20 19 40 40 H 1.08003 * 120.00159 * 180.22841 * 22 21 20 41 41 H 1.08002 * 119.99583 * 179.72745 * 23 22 21 42 42 H 1.07999 * 120.00068 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00050 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3523 3.8846 -2.5713 18 8 -1.7158 4.5183 -3.7994 19 6 -3.0314 5.0761 -3.7983 20 6 -3.3070 5.7155 -5.1349 21 6 -2.9987 7.0473 -5.3406 22 6 -3.2470 7.6325 -6.5680 23 6 -3.8133 6.8889 -7.5865 24 6 -4.1264 5.5585 -7.3791 25 6 -3.8737 4.9720 -6.1532 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8117 0.4042 0.4384 32 1 2.2954 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1091 2.6000 -3.4965 35 1 -2.0464 3.0703 -2.3637 36 1 -1.3928 4.6121 -1.7606 37 1 -3.7606 4.2867 -3.6156 38 1 -3.1064 5.8287 -3.0135 39 1 -2.5607 7.6296 -4.5434 40 1 -3.0027 8.6720 -6.7300 41 1 -4.0114 7.3474 -8.5441 42 1 -4.5692 4.9777 -8.1747 43 1 -4.1187 3.9327 -5.9910 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183809600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:58 Heat of formation + Delta-G solvation = -74.381092 kcal Electronic energy + Delta-G solvation = -22281.399422 eV Core-core repulsion = 18905.018055 eV Total energy + Delta-G solvation = -3376.381367 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.66596 -39.28077 -37.66902 -35.29330 -32.74779 -32.43964 -31.64196 -31.17755 -30.48937 -27.27476 -26.16146 -23.58755 -22.85709 -22.29807 -21.59567 -20.30501 -19.50395 -17.86308 -17.19229 -16.87155 -16.41140 -15.75365 -15.55856 -15.41882 -15.17101 -14.54928 -14.20475 -13.72430 -13.65324 -13.25945 -13.09940 -12.97830 -12.66973 -12.50394 -12.38055 -12.17847 -11.73064 -11.38955 -11.36984 -11.15751 -11.13061 -10.80960 -10.70678 -10.43538 -9.86842 -9.79953 -9.69524 -9.25540 -9.19345 -9.16726 -9.08682 -8.26035 -8.09273 -6.61997 -4.20874 0.98801 1.12931 3.22562 3.23443 3.40458 3.45302 3.60909 3.71158 4.27909 4.43663 4.54663 4.63756 4.74277 4.84458 5.00065 5.03219 5.07137 5.14269 5.16043 5.27857 5.38064 5.44449 5.68554 5.70594 5.76159 5.85900 5.91902 6.07210 6.09280 6.16351 6.21906 6.28029 6.33216 6.69460 6.70082 6.78991 6.96282 7.04616 7.07663 7.36419 7.41630 7.67914 8.23990 8.47577 8.70011 8.97416 9.43864 10.75834 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035583 B = 0.002477 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.694698 B =11302.945384 C =11464.218849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.250 3.750 4 H 0.040 0.960 5 C -0.630 4.630 6 H 0.062 0.938 7 C 0.048 3.952 8 N -0.886 5.886 9 Si 1.030 2.970 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.700 5.700 14 C 0.505 3.495 15 O -0.555 6.555 16 C -0.141 4.141 17 C 0.080 3.920 18 O -0.386 6.386 19 C 0.103 3.897 20 C -0.088 4.088 21 C -0.099 4.099 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.099 4.099 26 H 0.048 0.952 27 H 0.030 0.970 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.271 0.729 32 H 0.394 0.606 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.649 10.020 -15.232 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.147 3.853 4 H 0.058 0.942 5 C -0.667 4.667 6 H 0.081 0.919 7 C -0.160 4.160 8 N -0.517 5.517 9 Si 0.857 3.143 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.348 5.348 14 C 0.290 3.710 15 O -0.435 6.435 16 C -0.181 4.181 17 C 0.003 3.997 18 O -0.306 6.306 19 C 0.027 3.973 20 C -0.088 4.088 21 C -0.117 4.117 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.117 4.117 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.227 0.773 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.901 9.694 -13.076 24.195 hybrid contribution 0.152 0.282 -1.912 1.939 sum -17.749 9.976 -14.988 25.282 Atomic orbital electron populations 1.21891 0.97447 0.98818 1.01921 1.22229 0.93659 0.99764 1.01379 1.19012 0.95765 0.88468 0.82095 0.94205 1.21985 0.89749 1.50065 1.04865 0.91939 1.25615 0.96619 0.91671 1.02107 1.70868 1.13904 1.36407 1.30569 0.84214 0.76030 0.77616 0.76429 1.20864 1.20697 1.19930 1.46257 1.14469 1.55844 1.18196 1.20205 0.82777 0.79193 0.88800 1.90663 1.50798 1.60326 1.41692 1.21499 0.97194 1.01870 0.97543 1.22151 0.95259 0.96696 0.85590 1.87882 1.31301 1.75106 1.36297 1.21271 0.85234 0.96822 0.93976 1.19666 0.99645 0.94072 0.95383 1.21111 0.98500 0.94576 0.97516 1.21161 0.99646 1.00068 0.93360 1.21199 0.98810 0.94479 0.99038 1.21156 1.00612 0.95309 0.97180 1.21103 0.98178 0.99650 0.92787 0.93310 0.95136 0.93033 0.93183 0.91884 0.91868 0.77345 0.88579 0.88692 0.92409 0.92331 0.92352 0.92332 0.85840 0.85918 0.86075 0.85933 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.53 37.16 0.32 -2.58 16 2 C -0.13 -2.94 5.37 -26.73 -0.14 -3.08 16 3 C 0.25 5.93 1.84 -69.09 -0.13 5.80 16 4 H 0.04 1.03 6.12 -51.93 -0.32 0.71 16 5 C -0.63 -16.88 8.92 -34.44 -0.31 -17.19 16 6 H 0.06 1.75 7.96 -52.49 -0.42 1.33 16 7 C 0.05 1.34 5.15 -17.82 -0.09 1.25 16 8 N -0.89 -26.06 13.70 55.43 0.76 -25.30 16 9 Si 1.03 24.94 26.56 -169.99 -4.51 20.43 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.29 6.34 56.52 0.36 -5.93 16 13 N -0.70 -13.88 5.03 -54.93 -0.28 -14.15 16 14 C 0.51 9.27 6.43 -10.98 -0.07 9.20 16 15 O -0.55 -11.78 13.13 5.55 0.07 -11.71 16 16 C -0.14 -1.96 6.07 -27.88 -0.17 -2.13 16 17 C 0.08 1.07 5.23 37.16 0.19 1.27 16 18 O -0.39 -5.01 10.33 -35.23 -0.36 -5.38 16 19 C 0.10 1.09 6.06 36.01 0.22 1.30 16 20 C -0.09 -0.90 5.51 -104.62 -0.58 -1.48 16 21 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 22 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 23 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 24 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 25 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16 26 H 0.05 0.96 5.63 -51.93 -0.29 0.67 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.09 7.89 -51.93 -0.41 0.68 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.48 5.77 -51.93 -0.30 1.18 16 31 H 0.27 7.88 8.73 -40.82 -0.36 7.52 16 32 H 0.39 6.98 8.53 -40.82 -0.35 6.63 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 38 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 39 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 40 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 41 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 353.79 15.07 5.33 5.33 Total: -1.00 -31.15 353.79 -8.47 -39.62 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.77 Total: 5.59 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -2.72 Total: -14.44 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.48 Total: -39.45 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.29 Total: -17.09 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -4.51 Total: 20.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.15 -8.47 -39.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183809600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.758 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds