Wall clock time and date at job start Tue Mar 31 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46981 * 180.02562 * 16 14 13 18 18 O 1.42901 * 109.46989 * 180.02562 * 17 16 14 19 19 C 1.42897 * 113.99761 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.46913 * 179.97438 * 19 18 17 21 21 C 1.38237 * 119.99839 * 269.72537 * 20 19 18 22 22 C 1.38231 * 119.99870 * 179.76964 * 21 20 19 23 23 C 1.38236 * 119.99954 * 0.50163 * 22 21 20 24 24 C 1.38230 * 120.00147 * 359.74666 * 23 22 21 25 25 C 1.38236 * 120.00017 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 32 32 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 35 35 H 1.08999 * 109.47408 * 300.00136 * 17 16 14 36 36 H 1.08999 * 109.46846 * 60.00007 * 17 16 14 37 37 H 1.09004 * 109.47144 * 299.99471 * 19 18 17 38 38 H 1.08994 * 109.47374 * 59.99800 * 19 18 17 39 39 H 1.08004 * 120.00101 * 359.97438 * 21 20 19 40 40 H 1.08003 * 120.00159 * 180.22841 * 22 21 20 41 41 H 1.08002 * 119.99583 * 179.72745 * 23 22 21 42 42 H 1.07999 * 120.00068 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00050 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3523 3.8846 -2.5713 18 8 -1.7158 4.5183 -3.7994 19 6 -3.0314 5.0761 -3.7983 20 6 -3.3070 5.7155 -5.1349 21 6 -2.9987 7.0473 -5.3406 22 6 -3.2470 7.6325 -6.5680 23 6 -3.8133 6.8889 -7.5865 24 6 -4.1264 5.5585 -7.3791 25 6 -3.8737 4.9720 -6.1532 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8117 0.4042 0.4384 32 1 2.2954 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1091 2.6000 -3.4965 35 1 -2.0464 3.0703 -2.3637 36 1 -1.3928 4.6121 -1.7606 37 1 -3.7606 4.2867 -3.6156 38 1 -3.1064 5.8287 -3.0135 39 1 -2.5607 7.6296 -4.5434 40 1 -3.0027 8.6720 -6.7300 41 1 -4.0114 7.3474 -8.5441 42 1 -4.5692 4.9777 -8.1747 43 1 -4.1187 3.9327 -5.9910 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183809600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:58 Heat of formation + Delta-G solvation = -93.511699 kcal Electronic energy + Delta-G solvation = -22282.228987 eV Core-core repulsion = 18905.018055 eV Total energy + Delta-G solvation = -3377.210932 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.88958 -40.26038 -38.63228 -37.05608 -34.47944 -33.75360 -33.03049 -31.79800 -31.65485 -29.10885 -26.98881 -24.94206 -24.06523 -23.48420 -22.30958 -21.91355 -21.16425 -19.76453 -18.29411 -17.76705 -17.45143 -17.12672 -16.78077 -16.45284 -16.26703 -15.67961 -15.47866 -15.11848 -14.72669 -14.56210 -14.39504 -14.29940 -14.20811 -13.74484 -13.59312 -13.38349 -13.37116 -12.65209 -12.50613 -12.39445 -12.33295 -12.25098 -11.89374 -11.86402 -11.76982 -11.57295 -11.22855 -10.75513 -10.65466 -10.40932 -9.83085 -9.78703 -9.77395 -8.81443 -6.40450 0.32281 0.49232 1.46667 1.48975 1.69887 1.77117 2.20219 2.42728 2.77919 2.93072 3.19933 3.80002 3.88284 3.89910 4.05845 4.14295 4.24984 4.31641 4.32095 4.33004 4.40947 4.42286 4.50854 4.60820 4.64427 4.75218 4.80714 4.84811 4.88311 5.06678 5.10146 5.15091 5.22677 5.30811 5.54265 5.55430 5.60411 5.66260 5.69052 5.72103 6.03052 6.08048 6.14003 6.54981 6.86359 7.27597 7.45344 8.55260 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035583 B = 0.002477 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.694698 B =11302.945384 C =11464.218849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.129 4.129 3 C 0.254 3.746 4 H 0.022 0.978 5 C -0.627 4.627 6 H 0.041 0.959 7 C 0.005 3.995 8 N -0.916 5.916 9 Si 1.064 2.936 10 H -0.281 1.281 11 H -0.274 1.274 12 H -0.255 1.255 13 N -0.703 5.703 14 C 0.506 3.494 15 O -0.582 6.582 16 C -0.129 4.129 17 C 0.086 3.914 18 O -0.396 6.396 19 C 0.100 3.900 20 C -0.108 4.108 21 C -0.114 4.114 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.131 4.131 25 C -0.113 4.113 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.262 0.738 32 H 0.404 0.596 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.128 0.872 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.465 10.532 -16.551 27.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.168 4.168 3 C 0.149 3.851 4 H 0.039 0.961 5 C -0.664 4.664 6 H 0.060 0.940 7 C -0.197 4.197 8 N -0.549 5.549 9 Si 0.886 3.114 10 H -0.207 1.207 11 H -0.200 1.200 12 H -0.179 1.179 13 N -0.352 5.352 14 C 0.293 3.707 15 O -0.464 6.464 16 C -0.168 4.168 17 C 0.009 3.991 18 O -0.316 6.316 19 C 0.024 3.976 20 C -0.108 4.108 21 C -0.132 4.132 22 C -0.149 4.149 23 C -0.138 4.138 24 C -0.148 4.148 25 C -0.131 4.131 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.238 0.762 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.146 0.854 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.730 10.219 -14.432 26.495 hybrid contribution 0.697 0.196 -1.621 1.775 sum -19.032 10.415 -16.053 26.989 Atomic orbital electron populations 1.21767 0.95465 1.00312 1.01459 1.22122 0.95335 0.98404 1.00896 1.18714 0.93436 0.89546 0.83397 0.96060 1.22163 0.91540 1.48755 1.03984 0.94030 1.26684 0.96740 0.91279 1.05040 1.70960 1.15062 1.38848 1.30035 0.83764 0.75814 0.78294 0.73534 1.20682 1.19951 1.17945 1.46110 1.15581 1.56230 1.17266 1.20854 0.81615 0.78264 0.89929 1.90651 1.51428 1.61153 1.43155 1.21406 0.97798 1.02419 0.95225 1.22006 0.94848 0.96484 0.85769 1.87854 1.32741 1.75205 1.35786 1.21419 0.84264 0.97237 0.94700 1.19772 1.00855 0.94652 0.95531 1.21311 0.98956 0.94590 0.98393 1.21468 0.99264 1.01163 0.93002 1.21563 0.97907 0.94427 0.99945 1.21472 1.00267 0.95824 0.97286 1.21312 0.98452 1.00148 0.93221 0.93032 0.92640 0.94203 0.92846 0.93221 0.92925 0.76175 0.87078 0.86617 0.92669 0.93036 0.91512 0.91708 0.85371 0.83979 0.83684 0.83893 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 8.53 71.98 0.61 -4.48 16 2 C -0.13 -5.60 5.37 30.60 0.16 -5.43 16 3 C 0.25 11.90 1.84 44.25 0.08 11.98 16 4 H 0.02 1.10 6.12 -2.39 -0.01 1.08 16 5 C -0.63 -33.85 8.92 25.60 0.23 -33.63 16 6 H 0.04 2.37 7.96 -2.91 -0.02 2.35 16 7 C 0.01 0.31 5.15 84.66 0.44 0.74 16 8 N -0.92 -54.70 13.70 21.45 0.29 -54.41 16 9 Si 1.06 50.18 26.56 68.60 1.82 52.00 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.25 -11.18 6.34 99.48 0.63 -10.55 16 13 N -0.70 -27.14 5.03 -446.10 -2.24 -29.38 16 14 C 0.51 17.82 6.43 87.66 0.56 18.38 16 15 O -0.58 -24.07 13.13 -3.04 -0.04 -24.11 16 16 C -0.13 -3.31 6.07 29.85 0.18 -3.13 16 17 C 0.09 2.18 5.23 71.98 0.38 2.55 16 18 O -0.40 -9.70 10.33 -148.98 -1.54 -11.23 16 19 C 0.10 2.00 6.06 71.24 0.43 2.43 16 20 C -0.11 -2.11 5.51 -19.86 -0.11 -2.22 16 21 C -0.11 -2.05 9.70 22.27 0.22 -1.83 16 22 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 23 C -0.12 -1.63 10.05 22.27 0.22 -1.40 16 24 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 25 C -0.11 -1.99 9.70 22.27 0.22 -1.77 16 26 H 0.05 1.93 5.63 -2.39 -0.01 1.92 16 27 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.04 1.61 7.89 -2.39 -0.02 1.59 16 29 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.05 2.27 5.77 -2.39 -0.01 2.26 16 31 H 0.26 15.61 8.73 -92.71 -0.81 14.80 16 32 H 0.40 13.88 8.53 -92.71 -0.79 13.09 16 33 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 36 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 37 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 38 H 0.06 1.18 8.08 -2.39 -0.02 1.16 16 39 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 42 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -66.36 353.79 2.45 -63.90 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.09 Total: 24.43 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 4.07 Total: -21.20 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -1.95 Total: -83.79 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.58 Total: -35.34 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 1.82 Total: 52.00 kcal Total: -66.36 2.45 -63.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183809600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.610 kcal (2) G-P(sol) polarization free energy of solvation -66.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds