Wall clock time and date at job start Tue Mar 31 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47099 * 89.99658 * 9 7 5 11 11 H 1.48495 * 109.47152 * 209.99607 * 9 7 5 12 12 H 1.48495 * 109.47111 * 329.99717 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 C 1.52992 * 109.47274 * 180.02562 * 16 14 13 18 18 O 1.42895 * 109.47123 * 180.02562 * 17 16 14 19 19 C 1.42902 * 114.00360 * 179.97438 * 18 17 16 20 20 C 1.50695 * 109.47411 * 179.97438 * 19 18 17 21 21 C 1.38240 * 120.00088 * 269.72594 * 20 19 18 22 22 C 1.38231 * 119.99812 * 179.76709 * 21 20 19 23 23 C 1.38228 * 120.00381 * 0.50401 * 22 21 20 24 24 C 1.38239 * 119.99887 * 359.75035 * 23 22 21 25 25 C 1.38236 * 120.00016 * 0.02562 * 24 23 22 26 26 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 28 28 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 29 29 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 30 30 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 31 31 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 33 33 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 34 34 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 35 35 H 1.09004 * 109.47116 * 299.99649 * 17 16 14 36 36 H 1.08993 * 109.47352 * 59.99893 * 17 16 14 37 37 H 1.08999 * 109.46890 * 299.99755 * 19 18 17 38 38 H 1.09001 * 109.47077 * 59.99461 * 19 18 17 39 39 H 1.08001 * 119.99454 * 359.97438 * 21 20 19 40 40 H 1.08005 * 119.99666 * 180.23256 * 22 21 20 41 41 H 1.07998 * 120.00358 * 179.72022 * 23 22 21 42 42 H 1.07996 * 120.00261 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.00009 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3521 -0.7599 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3355 2.6412 0.4309 16 6 0.0388 3.3434 2.6527 17 6 -1.3778 3.9050 2.5171 18 8 -1.7554 4.5448 3.7378 19 6 -3.0689 5.1073 3.7172 20 6 -3.3604 5.7518 5.0478 21 6 -3.9484 5.0148 6.0588 22 6 -4.2113 5.6047 7.2809 23 6 -3.8959 6.9344 7.4888 24 6 -3.3127 7.6728 6.4761 25 6 -3.0454 7.0817 5.2554 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8293 -0.0617 -2.9496 32 1 2.2720 2.1230 1.9979 33 1 0.0655 2.6181 3.4660 34 1 0.7332 4.1557 2.8675 35 1 -1.4048 4.6303 1.7038 36 1 -2.0718 3.0925 2.3026 37 1 -3.1307 5.8572 2.9286 38 1 -3.7984 4.3199 3.5276 39 1 -4.1993 3.9772 5.8947 40 1 -4.6673 5.0279 8.0720 41 1 -4.1054 7.3965 8.4421 42 1 -3.0665 8.7118 6.6383 43 1 -2.5902 7.6587 4.4641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183809616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:01 Heat of formation + Delta-G solvation = -74.001362 kcal Electronic energy + Delta-G solvation = -22208.525374 eV Core-core repulsion = 18832.160474 eV Total energy + Delta-G solvation = -3376.364900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.61362 -39.11132 -37.58864 -35.10165 -32.67031 -32.34594 -31.28693 -31.14497 -30.27554 -27.05368 -26.10228 -23.71009 -22.82347 -22.64001 -21.55310 -20.09753 -19.30013 -17.43728 -17.01190 -16.41664 -16.32314 -15.68272 -15.38873 -15.22895 -15.09009 -14.40319 -14.32411 -13.98081 -13.65526 -13.15975 -12.98906 -12.79572 -12.68199 -12.53894 -11.97815 -11.56671 -11.34548 -11.31420 -11.23773 -11.07909 -11.06282 -10.98243 -10.81106 -10.32053 -10.17176 -9.64229 -9.62241 -9.16110 -9.11736 -9.05055 -8.96859 -8.50274 -7.82300 -6.12563 -4.21959 1.02305 1.16163 3.24075 3.28054 3.31387 3.33684 3.40660 3.77984 4.27368 4.45702 4.58316 4.70007 4.78681 4.88307 5.04635 5.12788 5.18572 5.20678 5.23199 5.33109 5.41710 5.54738 5.72372 5.79573 5.82910 5.94849 6.01163 6.19646 6.24940 6.37023 6.38898 6.45280 6.65739 6.73394 7.03826 7.14329 7.19286 7.36728 7.45662 7.61959 7.73292 7.90227 8.18157 8.67019 8.77483 9.13551 9.45536 10.92736 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032760 B = 0.002405 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.503729 B =11639.330214 C =12083.562470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.505 3.495 15 O -0.553 6.553 16 C -0.141 4.141 17 C 0.080 3.920 18 O -0.386 6.386 19 C 0.103 3.897 20 C -0.087 4.087 21 C -0.099 4.099 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.099 4.099 26 H 0.022 0.978 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.389 0.611 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.921 10.169 16.291 23.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.289 3.711 15 O -0.433 6.433 16 C -0.181 4.181 17 C 0.003 3.997 18 O -0.306 6.306 19 C 0.027 3.973 20 C -0.087 4.087 21 C -0.117 4.117 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.117 4.117 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.222 0.778 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.314 10.041 15.558 22.807 hybrid contribution 1.201 -0.086 0.082 1.207 sum -12.113 9.956 15.640 22.147 Atomic orbital electron populations 1.21831 0.98386 0.98014 1.01166 1.21936 0.92595 0.99840 1.02289 1.18792 0.94193 0.89188 0.81052 0.93305 1.21241 0.90746 1.38985 1.06265 0.92080 1.24893 0.98618 0.94835 0.95386 1.69897 1.35110 1.37603 1.09377 0.86453 0.84879 0.78441 0.77361 1.20551 1.21089 1.19873 1.46485 1.14722 1.55671 1.18602 1.20122 0.82902 0.79351 0.88679 1.90671 1.51520 1.60387 1.40718 1.21514 0.97010 1.01729 0.97884 1.22157 0.95308 0.96582 0.85652 1.87877 1.31430 1.74735 1.36580 1.21268 0.85343 0.96757 0.93965 1.19674 0.99441 0.94091 0.95488 1.21107 0.98115 0.99669 0.92828 1.21152 1.00634 0.95290 0.97185 1.21192 0.98843 0.94505 0.99031 1.21157 0.99599 1.00042 0.93461 1.21110 0.98507 0.94567 0.97522 0.95863 0.94352 0.93166 0.88288 0.95037 0.92574 0.77846 0.88834 0.88746 0.92374 0.92406 0.92344 0.92365 0.85856 0.85953 0.86105 0.85948 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.52 37.16 0.32 -2.72 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.57 16 4 H 0.05 1.42 7.57 -51.93 -0.39 1.02 16 5 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.64 11.29 55.43 0.63 -24.02 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.71 -14.42 5.02 -54.93 -0.28 -14.70 16 14 C 0.50 9.70 6.40 -10.98 -0.07 9.63 16 15 O -0.55 -12.48 13.15 5.56 0.07 -12.41 16 16 C -0.14 -2.05 6.07 -27.88 -0.17 -2.22 16 17 C 0.08 1.12 5.23 37.15 0.19 1.32 16 18 O -0.39 -5.18 10.33 -35.23 -0.36 -5.55 16 19 C 0.10 1.12 6.06 36.00 0.22 1.34 16 20 C -0.09 -0.92 5.51 -104.62 -0.58 -1.49 16 21 C -0.10 -0.96 9.70 -39.58 -0.38 -1.34 16 22 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 23 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 24 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 25 C -0.10 -0.96 9.70 -39.58 -0.38 -1.34 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.82 5.67 -51.93 -0.29 0.53 16 28 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 29 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.39 6.90 8.54 -40.82 -0.35 6.55 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 356.54 15.07 5.37 5.37 Total: -1.00 -30.47 356.54 -9.11 -39.58 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.78 Total: 6.58 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.74 Total: -10.40 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.35 Total: -38.72 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.29 Total: -17.95 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.47 -9.11 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183809616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.418 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds