Wall clock time and date at job start Tue Mar 31 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47099 * 89.99658 * 9 7 5 11 11 H 1.48495 * 109.47152 * 209.99607 * 9 7 5 12 12 H 1.48495 * 109.47111 * 329.99717 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 C 1.52992 * 109.47274 * 180.02562 * 16 14 13 18 18 O 1.42895 * 109.47123 * 180.02562 * 17 16 14 19 19 C 1.42902 * 114.00360 * 179.97438 * 18 17 16 20 20 C 1.50695 * 109.47411 * 179.97438 * 19 18 17 21 21 C 1.38240 * 120.00088 * 269.72594 * 20 19 18 22 22 C 1.38231 * 119.99812 * 179.76709 * 21 20 19 23 23 C 1.38228 * 120.00381 * 0.50401 * 22 21 20 24 24 C 1.38239 * 119.99887 * 359.75035 * 23 22 21 25 25 C 1.38236 * 120.00016 * 0.02562 * 24 23 22 26 26 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 28 28 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 29 29 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 30 30 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 31 31 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 33 33 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 34 34 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 35 35 H 1.09004 * 109.47116 * 299.99649 * 17 16 14 36 36 H 1.08993 * 109.47352 * 59.99893 * 17 16 14 37 37 H 1.08999 * 109.46890 * 299.99755 * 19 18 17 38 38 H 1.09001 * 109.47077 * 59.99461 * 19 18 17 39 39 H 1.08001 * 119.99454 * 359.97438 * 21 20 19 40 40 H 1.08005 * 119.99666 * 180.23256 * 22 21 20 41 41 H 1.07998 * 120.00358 * 179.72022 * 23 22 21 42 42 H 1.07996 * 120.00261 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.00009 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3521 -0.7599 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3355 2.6412 0.4309 16 6 0.0388 3.3434 2.6527 17 6 -1.3778 3.9050 2.5171 18 8 -1.7554 4.5448 3.7378 19 6 -3.0689 5.1073 3.7172 20 6 -3.3604 5.7518 5.0478 21 6 -3.9484 5.0148 6.0588 22 6 -4.2113 5.6047 7.2809 23 6 -3.8959 6.9344 7.4888 24 6 -3.3127 7.6728 6.4761 25 6 -3.0454 7.0817 5.2554 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8293 -0.0617 -2.9496 32 1 2.2720 2.1230 1.9979 33 1 0.0655 2.6181 3.4660 34 1 0.7332 4.1557 2.8675 35 1 -1.4048 4.6303 1.7038 36 1 -2.0718 3.0925 2.3026 37 1 -3.1307 5.8572 2.9286 38 1 -3.7984 4.3199 3.5276 39 1 -4.1993 3.9772 5.8947 40 1 -4.6673 5.0279 8.0720 41 1 -4.1054 7.3965 8.4421 42 1 -3.0665 8.7118 6.6383 43 1 -2.5902 7.6587 4.4641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183809616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:00 Heat of formation + Delta-G solvation = -91.843922 kcal Electronic energy + Delta-G solvation = -22209.299086 eV Core-core repulsion = 18832.160474 eV Total energy + Delta-G solvation = -3377.138612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.78929 -40.24051 -38.60482 -36.94331 -34.30234 -33.62183 -32.81338 -31.78577 -31.59339 -28.93777 -26.98127 -25.32803 -24.23574 -23.47089 -22.28224 -21.81958 -21.03511 -18.95333 -17.96099 -17.72667 -17.39957 -17.15538 -16.69405 -16.39064 -16.32397 -15.92629 -15.57252 -15.00981 -14.64639 -14.57302 -14.32709 -14.17774 -13.67844 -13.55554 -13.38892 -13.31732 -13.15598 -12.89546 -12.66434 -12.35168 -12.31299 -12.16150 -12.03156 -11.87901 -11.85052 -11.58082 -11.04362 -10.68628 -10.64461 -10.50115 -9.81810 -9.76090 -9.61357 -8.15614 -6.32751 0.33536 0.50514 1.45065 1.45617 1.55956 1.86086 2.23393 2.43703 2.84164 3.13520 3.24653 3.83173 3.90894 3.93083 4.08507 4.15658 4.28006 4.33934 4.34560 4.43550 4.50303 4.58244 4.59173 4.65841 4.76457 4.77424 4.84332 4.87884 5.07708 5.08095 5.16389 5.27186 5.44832 5.55525 5.57318 5.61556 5.64230 5.67713 5.80928 5.93860 6.09254 6.14988 6.18293 6.75770 7.00118 7.34476 7.59885 8.89616 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032760 B = 0.002405 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.503729 B =11639.330214 C =12083.562470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.277 3.723 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.705 5.705 14 C 0.502 3.498 15 O -0.590 6.590 16 C -0.127 4.127 17 C 0.086 3.914 18 O -0.394 6.394 19 C 0.099 3.901 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.130 4.130 23 C -0.120 4.120 24 C -0.131 4.131 25 C -0.114 4.114 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.264 0.736 32 H 0.405 0.595 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.129 0.871 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.563 10.809 18.779 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.173 3.827 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.354 5.354 14 C 0.290 3.710 15 O -0.471 6.471 16 C -0.166 4.166 17 C 0.009 3.991 18 O -0.314 6.314 19 C 0.023 3.977 20 C -0.108 4.108 21 C -0.132 4.132 22 C -0.148 4.148 23 C -0.138 4.138 24 C -0.148 4.148 25 C -0.132 4.132 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.240 0.760 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.147 0.853 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.161 0.839 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.958 10.697 18.091 24.691 hybrid contribution 1.006 -0.228 -0.655 1.222 sum -11.951 10.470 17.437 23.590 Atomic orbital electron populations 1.21671 0.96913 0.99152 1.00289 1.21788 0.93828 0.99179 1.01279 1.18372 0.93589 0.89216 0.81490 0.98347 1.21593 0.91525 1.38841 1.06637 0.91061 1.25772 1.03268 0.94455 0.95067 1.70050 1.37010 1.38374 1.09897 0.85379 0.79211 0.78839 0.77103 1.19712 1.21319 1.18956 1.46261 1.15745 1.55788 1.17631 1.20892 0.81826 0.78472 0.89845 1.90662 1.52432 1.61503 1.42551 1.21403 0.97552 1.02387 0.95306 1.21990 0.94984 0.96247 0.85886 1.87849 1.32867 1.74788 1.35885 1.21419 0.84334 0.97118 0.94822 1.19759 1.00749 0.94710 0.95549 1.21308 0.98407 1.00141 0.93295 1.21467 1.00283 0.95821 0.97234 1.21562 0.97877 0.94421 0.99940 1.21467 0.99175 1.01154 0.93045 1.21306 0.98963 0.94527 0.98428 0.93617 0.93628 0.95560 0.91083 0.94052 0.92636 0.76038 0.86531 0.86794 0.93271 0.93010 0.91783 0.91668 0.85287 0.83875 0.83632 0.83930 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.52 71.98 0.61 -4.88 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.81 16 3 C 0.28 14.08 2.24 44.24 0.10 14.18 16 4 H 0.00 -0.08 7.57 -2.39 -0.02 -0.10 16 5 C -0.55 -28.81 8.73 25.60 0.22 -28.59 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.01 0.77 5.29 84.65 0.45 1.22 16 8 N -0.91 -52.26 11.29 21.45 0.24 -52.02 16 9 Si 0.97 41.99 29.54 68.60 2.03 44.02 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 13 N -0.71 -28.44 5.02 -446.09 -2.24 -30.67 16 14 C 0.50 19.07 6.40 87.66 0.56 19.63 16 15 O -0.59 -27.06 13.15 -3.03 -0.04 -27.10 16 16 C -0.13 -3.45 6.07 29.85 0.18 -3.27 16 17 C 0.09 2.35 5.23 71.98 0.38 2.72 16 18 O -0.39 -10.12 10.33 -148.98 -1.54 -11.66 16 19 C 0.10 2.10 6.06 71.23 0.43 2.54 16 20 C -0.11 -2.19 5.51 -19.87 -0.11 -2.30 16 21 C -0.11 -2.06 9.70 22.27 0.22 -1.85 16 22 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 23 C -0.12 -1.65 10.05 22.27 0.22 -1.43 16 24 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 25 C -0.11 -2.10 9.70 22.27 0.22 -1.88 16 26 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.04 1.94 5.67 -2.39 -0.01 1.92 16 28 H 0.03 1.26 7.85 -2.39 -0.02 1.24 16 29 H 0.07 3.91 5.95 -2.38 -0.01 3.90 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.40 13.74 8.54 -92.70 -0.79 12.95 16 33 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 36 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 37 H 0.06 1.25 8.09 -2.39 -0.02 1.23 16 38 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 39 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 42 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 43 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -66.57 356.54 2.75 -63.83 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.20 Total: 26.77 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 4.09 Total: -13.17 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -2.00 Total: -82.69 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -1.58 Total: -38.75 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -66.57 2.75 -63.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183809616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.016 kcal (2) G-P(sol) polarization free energy of solvation -66.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds