Wall clock time and date at job start Tue Mar 31 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47256 * 90.00491 * 9 7 5 11 11 H 1.48506 * 109.46930 * 210.00332 * 9 7 5 12 12 H 1.48499 * 109.47104 * 330.00193 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 O 1.42904 * 109.47077 * 180.02562 * 16 14 13 18 18 C 1.35896 * 117.00192 * 180.02562 * 17 16 14 19 19 C 1.38756 * 120.05415 * 359.72513 * 18 17 16 20 20 C 1.38126 * 119.94114 * 179.69859 * 19 18 17 21 21 C 1.38287 * 120.05467 * 0.59597 * 20 19 18 22 22 C 1.50705 * 119.94355 * 179.69574 * 21 20 19 23 23 C 1.38241 * 120.11294 * 359.68817 * 21 20 19 24 24 C 1.38171 * 120.05600 * 0.02562 * 23 21 20 25 25 C 1.50700 * 120.02618 * 179.97438 * 24 23 21 26 26 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 27 27 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 33 33 H 1.08995 * 109.47765 * 299.99977 * 16 14 13 34 34 H 1.09000 * 109.47068 * 60.00791 * 16 14 13 35 35 H 1.08000 * 120.02785 * 359.97438 * 19 18 17 36 36 H 1.08001 * 119.97090 * 180.30163 * 20 19 18 37 37 H 1.09000 * 109.47334 * 269.98646 * 22 21 20 38 38 H 1.09004 * 109.46882 * 29.98396 * 22 21 20 39 39 H 1.08994 * 109.46906 * 149.98310 * 22 21 20 40 40 H 1.08002 * 119.97400 * 180.02562 * 23 21 20 41 41 H 1.09001 * 109.46937 * 270.02564 * 25 24 23 42 42 H 1.09000 * 109.47111 * 30.02843 * 25 24 23 43 43 H 1.08997 * 109.46959 * 150.02988 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5539 -0.3523 -0.7597 11 1 6.3836 0.9211 -2.8164 12 1 6.5576 2.0717 -0.6888 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 8 -1.2892 3.8570 2.5302 18 6 -1.8041 4.4998 3.6111 19 6 -1.0511 4.6233 4.7700 20 6 -1.5745 5.2827 5.8652 21 6 -2.8523 5.8087 5.8114 22 6 -3.4233 6.5216 7.0101 23 6 -3.6067 5.6818 4.6599 24 6 -3.0855 5.0283 3.5597 25 6 -3.9087 4.8899 2.3050 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0607 -2.9502 32 1 2.2720 2.1231 1.9978 33 1 0.0673 2.6131 3.4684 34 1 0.7277 4.1530 2.8678 35 1 -0.0551 4.2082 4.8142 36 1 -0.9870 5.3833 6.7658 37 1 -3.9418 5.8044 7.6465 38 1 -2.6158 6.9896 7.5732 39 1 -4.1252 7.2863 6.6776 40 1 -4.6042 6.0938 4.6203 41 1 -4.4881 3.9677 2.3505 42 1 -4.5852 5.7402 2.2186 43 1 -3.2482 4.8616 1.4384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183828228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:38 Heat of formation + Delta-G solvation = -84.290875 kcal Electronic energy + Delta-G solvation = -22902.414024 eV Core-core repulsion = 19525.602937 eV Total energy + Delta-G solvation = -3376.811087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.47228 -40.48730 -38.55679 -36.87824 -34.36757 -34.14676 -32.95398 -32.46683 -30.05461 -28.49257 -28.09780 -26.77066 -25.00319 -23.37580 -22.01184 -21.58497 -21.16671 -19.14498 -18.98986 -17.59771 -17.43965 -17.12699 -16.76938 -16.09526 -15.91820 -15.66834 -15.23036 -14.90235 -14.69107 -14.58706 -14.08596 -14.02210 -13.81530 -13.69876 -13.48790 -13.31379 -13.17858 -12.92030 -12.72618 -12.70373 -12.64178 -12.20444 -12.17826 -12.08116 -11.74933 -11.74064 -11.59556 -11.06834 -10.70377 -10.52252 -9.74823 -9.69421 -8.91975 -8.16515 -6.34123 0.38800 0.46418 1.45244 1.46002 1.56142 1.71896 1.75554 2.40945 2.77118 2.91571 3.13353 3.73785 3.87740 3.92105 4.03792 4.09856 4.13458 4.38272 4.40165 4.47454 4.55023 4.57800 4.70026 4.74086 4.77712 4.81596 4.92640 5.03066 5.04365 5.17684 5.23956 5.35191 5.39745 5.41568 5.51551 5.52944 5.59431 5.70461 5.77032 5.86780 5.94176 6.15197 6.42413 6.73513 6.92308 7.32326 7.51990 8.89013 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029342 B = 0.003025 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.023975 B = 9252.887652 C = 9830.119809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.698 5.698 14 C 0.498 3.502 15 O -0.574 6.574 16 C 0.050 3.950 17 O -0.315 6.315 18 C 0.095 3.905 19 C -0.207 4.207 20 C -0.091 4.091 21 C -0.128 4.128 22 C -0.106 4.106 23 C -0.088 4.088 24 C -0.132 4.132 25 C -0.104 4.104 26 H 0.023 0.977 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.265 0.735 32 H 0.408 0.592 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.148 0.852 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.609 9.811 19.463 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.349 5.349 14 C 0.284 3.716 15 O -0.454 6.454 16 C -0.028 4.028 17 O -0.229 6.229 18 C 0.050 3.950 19 C -0.226 4.226 20 C -0.108 4.108 21 C -0.128 4.128 22 C -0.162 4.162 23 C -0.106 4.106 24 C -0.133 4.133 25 C -0.161 4.161 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.243 0.757 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.165 0.835 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.224 9.659 18.423 23.178 hybrid contribution 1.342 -0.336 -0.458 1.457 sum -8.882 9.323 17.965 22.104 Atomic orbital electron populations 1.21685 0.97188 0.99148 1.00119 1.21796 0.93503 0.99153 1.01531 1.18402 0.93796 0.89130 0.81064 0.98461 1.21570 0.91188 1.38966 1.06798 0.90681 1.25787 1.03360 0.94397 0.95018 1.70053 1.37123 1.38351 1.09890 0.85356 0.79037 0.78918 0.77084 1.19633 1.21466 1.18784 1.46092 1.14877 1.55935 1.18004 1.20624 0.82388 0.79172 0.89459 1.90698 1.52318 1.60224 1.42126 1.22555 0.83896 1.00282 0.96082 1.86124 1.30469 1.69748 1.36532 1.19237 0.93930 0.95075 0.86769 1.21510 1.01773 1.05864 0.93447 1.21152 0.95396 0.96138 0.98163 1.20213 0.94826 1.00988 0.96755 1.20756 1.01473 0.99716 0.94292 1.21018 1.00385 0.97981 0.91222 1.19551 0.92940 1.02383 0.98441 1.20586 0.98824 1.02680 0.93960 0.95773 0.93507 0.93948 0.90933 0.93663 0.92600 0.75679 0.86550 0.86796 0.83654 0.83335 0.90569 0.90618 0.90827 0.83460 0.91448 0.89686 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.52 71.98 0.61 -5.08 16 2 C -0.12 -5.93 5.45 30.59 0.17 -5.77 16 3 C 0.28 14.16 2.24 44.24 0.10 14.26 16 4 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 5 C -0.55 -28.35 8.73 25.60 0.22 -28.13 16 6 H 0.08 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.01 0.77 5.29 84.65 0.45 1.22 16 8 N -0.92 -52.23 11.29 21.45 0.24 -51.98 16 9 Si 0.97 41.51 29.54 68.60 2.03 43.54 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 13 N -0.70 -27.80 5.02 -446.10 -2.24 -30.04 16 14 C 0.50 19.69 6.48 87.66 0.57 20.26 16 15 O -0.57 -28.52 13.64 16.01 0.22 -28.30 16 16 C 0.05 1.41 5.22 71.24 0.37 1.78 16 17 O -0.32 -10.47 8.71 -73.35 -0.64 -11.11 16 18 C 0.09 2.62 6.66 22.51 0.15 2.77 16 19 C -0.21 -4.45 9.04 22.37 0.20 -4.25 16 20 C -0.09 -1.60 9.69 22.25 0.22 -1.39 16 21 C -0.13 -2.20 5.88 -19.85 -0.12 -2.32 16 22 C -0.11 -1.12 10.01 71.24 0.71 -0.41 16 23 C -0.09 -1.73 9.35 22.25 0.21 -1.52 16 24 C -0.13 -3.37 5.89 -19.77 -0.12 -3.48 16 25 C -0.10 -2.57 9.79 71.24 0.70 -1.88 16 26 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 28 H 0.04 1.88 5.64 -2.39 -0.01 1.87 16 29 H 0.07 4.00 5.95 -2.39 -0.01 3.98 16 30 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.41 13.05 8.54 -92.70 -0.79 12.25 16 33 H 0.12 2.53 7.65 -2.39 -0.02 2.51 16 34 H 0.11 2.54 7.67 -2.39 -0.02 2.52 16 35 H 0.15 2.47 6.30 -2.91 -0.02 2.46 16 36 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.64 8.08 -2.38 -0.02 0.62 16 39 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 40 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 43 H 0.05 1.43 7.53 -2.39 -0.02 1.41 16 Total: -1.00 -70.28 351.46 4.27 -66.01 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.22 Total: 25.81 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 4.44 Total: -13.93 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -2.00 Total: -82.02 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.42 Total: -39.41 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -70.28 4.27 -66.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183828228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.277 kcal (2) G-P(sol) polarization free energy of solvation -70.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds