Wall clock time and date at job start Tue Mar 31 2020 06:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47302 * 299.99971 * 16 14 13 18 18 C 1.53001 * 109.46988 * 59.99963 * 16 14 13 19 19 C 1.50701 * 109.47221 * 179.97438 * 16 14 13 20 20 C 1.38284 * 119.97274 * 299.72633 * 19 16 14 21 21 C 1.38243 * 120.11214 * 179.72523 * 20 19 16 22 22 C 1.38166 * 120.05712 * 0.54565 * 21 20 19 23 23 C 1.38708 * 119.94049 * 359.73486 * 22 21 20 24 24 O 1.35903 * 120.05441 * 179.97438 * 23 22 21 25 25 C 1.42895 * 116.99980 * 0.02562 * 24 23 22 26 26 C 1.38126 * 119.97422 * 120.00214 * 19 16 14 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 34 34 H 1.09005 * 109.47217 * 179.97438 * 18 16 14 35 35 H 1.08998 * 109.47361 * 299.99673 * 18 16 14 36 36 H 1.08993 * 109.47148 * 60.00540 * 18 16 14 37 37 H 1.08005 * 119.94627 * 359.97438 * 20 19 16 38 38 H 1.08004 * 119.97264 * 180.25669 * 21 20 19 39 39 H 1.07997 * 120.03213 * 179.70455 * 22 21 20 40 40 H 1.09002 * 109.47330 * 60.00522 * 25 24 23 41 41 H 1.09006 * 109.46900 * 180.02562 * 25 24 23 42 42 H 1.08995 * 109.47530 * 300.00367 * 25 24 23 43 43 H 1.08007 * 120.02674 * 0.02562 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 1 0.7280 4.1542 -2.8665 18 6 0.0806 2.3224 -3.7971 19 6 -1.3614 3.8860 -2.5230 20 6 -2.4158 3.0314 -2.2582 21 6 -3.6985 3.5311 -2.1316 22 6 -3.9317 4.8847 -2.2804 23 6 -2.8766 5.7433 -2.5517 24 8 -3.1034 7.0751 -2.6991 25 6 -4.4535 7.5224 -2.5611 26 6 -1.5893 5.2401 -2.6728 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8293 -0.0605 2.9501 33 1 2.2718 2.1232 -1.9978 34 1 -0.2081 2.8100 -4.7283 35 1 1.0915 1.9262 -3.8923 36 1 -0.6108 1.5070 -3.5850 37 1 -2.2363 1.9723 -2.1463 38 1 -4.5198 2.8621 -1.9207 39 1 -4.9347 5.2740 -2.1861 40 1 -4.8195 7.2715 -1.5654 41 1 -4.4946 8.6025 -2.7021 42 1 -5.0765 7.0345 -3.3107 43 1 -0.7661 5.9065 -2.8844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183865921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:16 Heat of formation + Delta-G solvation = -62.803226 kcal Electronic energy + Delta-G solvation = -23499.746827 eV Core-core repulsion = 20123.867514 eV Total energy + Delta-G solvation = -3375.879313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28580 -39.19219 -37.36555 -35.02743 -33.71333 -32.26340 -30.89356 -30.58841 -28.92262 -27.37588 -26.88124 -24.44377 -23.03993 -22.48204 -21.49749 -19.88831 -19.18598 -17.82790 -16.91005 -16.24182 -16.00340 -15.79226 -15.48488 -15.25223 -14.69051 -14.47569 -14.07562 -13.56760 -13.37712 -13.13681 -12.79726 -12.62084 -12.41710 -12.35385 -11.96717 -11.77784 -11.54239 -11.34198 -11.24809 -11.10550 -10.95679 -10.93523 -10.81003 -10.64424 -10.29487 -10.14484 -9.60203 -9.03913 -8.95458 -8.63288 -8.46498 -8.06142 -7.76675 -6.10742 -4.19950 1.41714 1.60785 3.21260 3.25332 3.32157 3.33697 3.46914 3.82069 4.22917 4.44204 4.70993 4.81353 4.98539 5.01570 5.08925 5.18952 5.21996 5.29581 5.31904 5.49636 5.52618 5.60933 5.76208 5.87565 5.93360 6.13871 6.21159 6.35912 6.40701 6.47558 6.57943 6.67993 6.78104 6.85420 7.06040 7.22484 7.39716 7.42383 7.50392 7.64420 7.76536 7.93316 8.20717 8.71960 8.80810 9.19705 9.47814 10.94524 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026195 B = 0.003518 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.636640 B = 7956.034414 C = 8229.539574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.506 3.494 15 O -0.539 6.539 16 C -0.079 4.079 17 H 0.099 0.901 18 C -0.138 4.138 19 C -0.017 4.017 20 C -0.116 4.116 21 C -0.084 4.084 22 C -0.212 4.212 23 C 0.118 3.882 24 O -0.321 6.321 25 C 0.029 3.971 26 C -0.145 4.145 27 H 0.049 0.951 28 H 0.021 0.979 29 H 0.039 0.961 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.238 7.754 -12.262 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.356 5.356 14 C 0.290 3.710 15 O -0.417 6.417 16 C -0.101 4.101 17 H 0.117 0.883 18 C -0.195 4.195 19 C -0.017 4.017 20 C -0.134 4.134 21 C -0.103 4.103 22 C -0.231 4.231 23 C 0.074 3.926 24 O -0.234 6.234 25 C -0.066 4.066 26 C -0.164 4.164 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.071 0.929 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.623 7.768 -11.414 18.708 hybrid contribution 1.015 -0.043 -0.062 1.018 sum -11.608 7.724 -11.476 18.059 Atomic orbital electron populations 1.21837 0.98395 0.97896 1.01237 1.21920 0.92578 0.99868 1.02181 1.18758 0.94079 0.89127 0.81098 0.93406 1.21245 0.90815 1.38898 1.06248 0.92134 1.24885 0.98542 0.94844 0.95428 1.69897 1.35085 1.37677 1.09301 0.86470 0.84963 0.77620 0.78172 1.20599 1.21111 1.19859 1.46466 1.14580 1.56078 1.18443 1.20091 0.82893 0.79410 0.88589 1.90692 1.51323 1.59448 1.40213 1.20397 0.94408 0.99515 0.95758 0.88252 1.21760 1.02913 0.98266 0.96588 1.19136 0.94142 0.92097 0.96334 1.20853 0.91874 1.00147 1.00503 1.20865 0.97015 0.94396 0.97974 1.21131 0.98164 0.94587 1.09180 1.18878 0.94079 0.82320 0.97345 1.86046 1.29272 1.21081 1.87039 1.22997 0.81853 1.00580 1.01162 1.20229 0.94613 0.94765 1.06772 0.93200 0.95993 0.94236 0.88401 0.95098 0.92608 0.78054 0.91803 0.91443 0.91898 0.85966 0.86026 0.85959 0.92758 0.88527 0.92882 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.69 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.59 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.71 11.29 55.43 0.63 -24.08 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.71 -14.31 4.91 -54.93 -0.27 -14.58 16 14 C 0.51 9.76 5.59 -10.99 -0.06 9.70 16 15 O -0.54 -12.33 12.27 5.56 0.07 -12.26 16 16 C -0.08 -1.16 2.90 -92.92 -0.27 -1.43 16 17 H 0.10 1.29 7.88 -51.93 -0.41 0.88 16 18 C -0.14 -1.64 8.90 37.16 0.33 -1.31 16 19 C -0.02 -0.25 4.39 -104.65 -0.46 -0.71 16 20 C -0.12 -1.74 7.93 -39.56 -0.31 -2.05 16 21 C -0.08 -1.12 10.04 -39.61 -0.40 -1.52 16 22 C -0.21 -2.68 9.04 -39.43 -0.36 -3.04 16 23 C 0.12 1.64 6.69 -39.22 -0.26 1.38 16 24 O -0.32 -4.05 10.50 -19.43 -0.20 -4.26 16 25 C 0.03 0.24 9.81 101.05 0.99 1.23 16 26 C -0.15 -2.11 9.61 -39.43 -0.38 -2.49 16 27 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 30 H 0.10 2.62 5.95 -51.93 -0.31 2.32 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.39 6.81 7.96 -40.82 -0.32 6.48 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.75 7.56 -51.93 -0.39 0.36 16 36 H 0.06 0.78 7.37 -51.93 -0.38 0.40 16 37 H 0.12 1.88 7.51 -52.48 -0.39 1.48 16 38 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.12 1.22 6.30 -52.49 -0.33 0.89 16 40 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 43 H 0.13 1.68 7.95 -52.48 -0.42 1.26 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -30.99 346.50 -7.64 -38.63 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.50 Total: 7.91 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -1.56 Total: -12.14 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.36 Total: -38.67 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.14 Total: -16.52 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.99 -7.64 -38.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183865921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.169 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds