Wall clock time and date at job start Tue Mar 31 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47302 * 299.99971 * 16 14 13 18 18 C 1.53001 * 109.46988 * 59.99963 * 16 14 13 19 19 C 1.50701 * 109.47221 * 179.97438 * 16 14 13 20 20 C 1.38284 * 119.97274 * 299.72633 * 19 16 14 21 21 C 1.38243 * 120.11214 * 179.72523 * 20 19 16 22 22 C 1.38166 * 120.05712 * 0.54565 * 21 20 19 23 23 C 1.38708 * 119.94049 * 359.73486 * 22 21 20 24 24 O 1.35903 * 120.05441 * 179.97438 * 23 22 21 25 25 C 1.42895 * 116.99980 * 0.02562 * 24 23 22 26 26 C 1.38126 * 119.97422 * 120.00214 * 19 16 14 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 34 34 H 1.09005 * 109.47217 * 179.97438 * 18 16 14 35 35 H 1.08998 * 109.47361 * 299.99673 * 18 16 14 36 36 H 1.08993 * 109.47148 * 60.00540 * 18 16 14 37 37 H 1.08005 * 119.94627 * 359.97438 * 20 19 16 38 38 H 1.08004 * 119.97264 * 180.25669 * 21 20 19 39 39 H 1.07997 * 120.03213 * 179.70455 * 22 21 20 40 40 H 1.09002 * 109.47330 * 60.00522 * 25 24 23 41 41 H 1.09006 * 109.46900 * 180.02562 * 25 24 23 42 42 H 1.08995 * 109.47530 * 300.00367 * 25 24 23 43 43 H 1.08007 * 120.02674 * 0.02562 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 1 0.7280 4.1542 -2.8665 18 6 0.0806 2.3224 -3.7971 19 6 -1.3614 3.8860 -2.5230 20 6 -2.4158 3.0314 -2.2582 21 6 -3.6985 3.5311 -2.1316 22 6 -3.9317 4.8847 -2.2804 23 6 -2.8766 5.7433 -2.5517 24 8 -3.1034 7.0751 -2.6991 25 6 -4.4535 7.5224 -2.5611 26 6 -1.5893 5.2401 -2.6728 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8293 -0.0605 2.9501 33 1 2.2718 2.1232 -1.9978 34 1 -0.2081 2.8100 -4.7283 35 1 1.0915 1.9262 -3.8923 36 1 -0.6108 1.5070 -3.5850 37 1 -2.2363 1.9723 -2.1463 38 1 -4.5198 2.8621 -1.9207 39 1 -4.9347 5.2740 -2.1861 40 1 -4.8195 7.2715 -1.5654 41 1 -4.4946 8.6025 -2.7021 42 1 -5.0765 7.0345 -3.3107 43 1 -0.7661 5.9065 -2.8844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183865921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:15 Heat of formation + Delta-G solvation = -81.683383 kcal Electronic energy + Delta-G solvation = -23500.565532 eV Core-core repulsion = 20123.867514 eV Total energy + Delta-G solvation = -3376.698018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.42999 -40.52824 -38.49260 -36.83194 -34.96520 -34.14252 -32.61847 -31.64881 -30.03397 -28.77802 -28.11532 -25.69353 -24.85565 -23.51677 -22.84668 -21.50732 -20.80105 -19.11957 -18.33435 -17.62637 -17.13148 -17.08295 -16.73687 -16.57764 -16.17207 -16.04709 -15.45623 -14.80147 -14.60241 -14.51396 -14.30458 -13.94736 -13.67615 -13.42794 -13.20653 -13.18094 -13.05890 -12.89933 -12.83914 -12.68016 -12.30998 -12.24939 -12.12594 -12.00850 -11.85944 -11.64162 -11.54591 -11.02356 -10.57802 -10.41944 -9.75884 -9.55555 -9.08807 -8.14454 -6.31537 0.36392 0.54694 1.45299 1.45602 1.56163 1.94069 2.32789 2.40863 2.64800 2.97923 3.15057 3.62809 3.87954 4.03713 4.16787 4.23029 4.29036 4.37844 4.41487 4.44829 4.52197 4.59266 4.60748 4.71395 4.74736 4.79865 4.91044 4.95254 5.09190 5.10706 5.27043 5.29703 5.34100 5.47263 5.52669 5.59272 5.67347 5.70992 5.82590 5.84292 5.97799 6.20493 6.49282 6.77553 7.06887 7.36135 7.66733 8.90710 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026195 B = 0.003518 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.636640 B = 7956.034414 C = 8229.539574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.006 1.006 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.259 1.259 13 N -0.705 5.705 14 C 0.503 3.497 15 O -0.578 6.578 16 C -0.068 4.068 17 H 0.119 0.881 18 C -0.133 4.133 19 C -0.031 4.031 20 C -0.136 4.136 21 C -0.089 4.089 22 C -0.210 4.210 23 C 0.111 3.889 24 O -0.336 6.336 25 C 0.019 3.981 26 C -0.161 4.161 27 H 0.022 0.978 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.264 0.736 33 H 0.402 0.598 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.059 0.941 41 H 0.119 0.881 42 H 0.068 0.932 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.407 8.548 -14.224 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.183 1.183 13 N -0.354 5.354 14 C 0.290 3.710 15 O -0.458 6.458 16 C -0.089 4.089 17 H 0.137 0.863 18 C -0.190 4.190 19 C -0.031 4.031 20 C -0.154 4.154 21 C -0.107 4.107 22 C -0.229 4.229 23 C 0.066 3.934 24 O -0.251 6.251 25 C -0.076 4.076 26 C -0.180 4.180 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.237 0.763 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.161 0.839 39 H 0.169 0.831 40 H 0.078 0.922 41 H 0.137 0.863 42 H 0.086 0.914 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.795 8.579 -13.424 20.433 hybrid contribution 0.950 -0.199 0.569 1.125 sum -11.846 8.380 -12.854 19.385 Atomic orbital electron populations 1.21664 0.96957 0.98964 1.00291 1.21760 0.93758 0.99156 1.01168 1.18313 0.93430 0.89136 0.81464 0.98783 1.21608 0.91598 1.38701 1.06630 0.91045 1.25765 1.03211 0.94461 0.95101 1.70057 1.37000 1.38489 1.09836 0.85399 0.79301 0.77324 0.78630 1.20586 1.21046 1.18334 1.46226 1.15550 1.56174 1.17417 1.20921 0.81781 0.78479 0.89824 1.90674 1.52306 1.60696 1.42162 1.20360 0.94738 1.00217 0.93598 0.86293 1.21770 1.03429 0.97465 0.96356 1.19217 0.94218 0.92517 0.97196 1.20922 0.92947 0.99764 1.01784 1.21166 0.97006 0.95248 0.97246 1.21441 0.99305 0.94134 1.07979 1.19055 0.94180 0.83188 0.96941 1.86028 1.31888 1.20292 1.86852 1.23329 0.80123 1.02101 1.02001 1.20405 0.95567 0.94693 1.07344 0.95900 0.93778 0.93370 0.91300 0.93981 0.92702 0.76264 0.89378 0.90438 0.92667 0.87091 0.83888 0.83150 0.92223 0.86287 0.91389 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.51 71.98 0.61 -4.84 16 2 C -0.12 -5.87 5.45 30.59 0.17 -5.70 16 3 C 0.28 14.32 2.24 44.24 0.10 14.42 16 4 H -0.01 -0.35 7.58 -2.38 -0.02 -0.37 16 5 C -0.55 -28.89 8.73 25.60 0.22 -28.67 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.01 0.79 5.29 84.66 0.45 1.23 16 8 N -0.92 -52.68 11.29 21.45 0.24 -52.44 16 9 Si 0.97 42.17 29.54 68.60 2.03 44.19 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 13 N -0.70 -28.55 4.91 -446.09 -2.19 -30.74 16 14 C 0.50 19.54 5.59 87.66 0.49 20.03 16 15 O -0.58 -27.30 12.27 -3.03 -0.04 -27.34 16 16 C -0.07 -1.91 2.90 -12.29 -0.04 -1.95 16 17 H 0.12 2.87 7.88 -2.39 -0.02 2.85 16 18 C -0.13 -2.92 8.90 71.98 0.64 -2.28 16 19 C -0.03 -0.92 4.39 -19.88 -0.09 -1.00 16 20 C -0.14 -4.05 7.93 22.28 0.18 -3.87 16 21 C -0.09 -2.25 10.04 22.25 0.22 -2.03 16 22 C -0.21 -4.92 9.04 22.37 0.20 -4.72 16 23 C 0.11 2.94 6.69 22.50 0.15 3.09 16 24 O -0.34 -7.93 10.50 -92.45 -0.97 -8.90 16 25 C 0.02 0.26 9.81 113.37 1.11 1.37 16 26 C -0.16 -4.56 9.61 22.37 0.21 -4.34 16 27 H 0.02 1.11 7.85 -2.39 -0.02 1.09 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 2.05 5.65 -2.38 -0.01 2.04 16 30 H 0.07 3.82 5.95 -2.39 -0.01 3.80 16 31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 33 H 0.40 13.73 7.96 -92.71 -0.74 12.99 16 34 H 0.09 1.53 8.14 -2.38 -0.02 1.52 16 35 H 0.08 1.54 7.56 -2.39 -0.02 1.52 16 36 H 0.05 1.30 7.37 -2.39 -0.02 1.28 16 37 H 0.11 3.47 7.51 -2.91 -0.02 3.44 16 38 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 39 H 0.15 2.55 6.30 -2.91 -0.02 2.53 16 40 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 41 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 43 H 0.13 3.43 7.95 -2.91 -0.02 3.41 16 Total: -1.00 -69.05 346.50 3.98 -65.08 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.27 Total: 29.41 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 4.64 Total: -19.26 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -1.95 Total: -83.18 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -1.01 Total: -36.24 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -69.05 3.98 -65.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183865921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.608 kcal (2) G-P(sol) polarization free energy of solvation -69.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds