Wall clock time and date at job start Tue Mar 31 2020 06:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46589 * 2 1 4 4 H 1.08996 * 109.47078 * 304.89992 * 3 2 1 5 5 C 1.50708 * 109.46671 * 184.90056 * 3 2 1 6 6 H 1.07995 * 119.99756 * 245.45081 * 5 3 2 7 7 C 1.37875 * 119.99872 * 65.45560 * 5 3 2 8 8 N 1.31519 * 120.00244 * 9.46760 * 7 5 3 9 9 Si 1.86798 * 120.00067 * 189.46829 * 7 5 3 10 10 H 1.48500 * 109.47197 * 84.99237 * 9 7 5 11 11 H 1.48500 * 109.47174 * 204.99392 * 9 7 5 12 12 H 1.48508 * 109.47008 * 324.99308 * 9 7 5 13 13 N 1.46499 * 109.47293 * 64.90534 * 3 2 1 14 14 C 1.34781 * 119.99815 * 275.00099 * 13 3 2 15 15 O 1.21282 * 119.99512 * 359.97438 * 14 13 3 16 16 C 1.50692 * 120.00150 * 180.02562 * 14 13 3 17 17 H 1.09004 * 109.46853 * 299.99886 * 16 14 13 18 18 C 1.53001 * 109.47054 * 59.99112 * 16 14 13 19 19 C 1.50692 * 109.47486 * 179.97438 * 16 14 13 20 20 C 1.38284 * 119.97313 * 299.73076 * 19 16 14 21 21 C 1.38247 * 120.11382 * 179.72357 * 20 19 16 22 22 C 1.38172 * 120.05439 * 0.54269 * 21 20 19 23 23 C 1.38713 * 119.94214 * 359.73137 * 22 21 20 24 24 O 1.35901 * 120.05741 * 179.97438 * 23 22 21 25 25 C 1.42901 * 116.99735 * 0.02562 * 24 23 22 26 26 C 1.38129 * 119.97147 * 119.99386 * 19 16 14 27 27 H 1.09008 * 109.46496 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47254 * 299.99403 * 1 2 3 29 29 H 1.08997 * 109.47615 * 60.00307 * 1 2 3 30 30 H 1.09000 * 109.47254 * 240.00597 * 2 1 3 31 31 H 1.08991 * 109.47100 * 120.00165 * 2 1 3 32 32 H 0.96997 * 120.00585 * 180.02562 * 8 7 5 33 33 H 0.96999 * 119.99889 * 94.98877 * 13 3 2 34 34 H 1.09003 * 109.47081 * 60.00982 * 18 16 14 35 35 H 1.09010 * 109.46886 * 180.02562 * 18 16 14 36 36 H 1.08995 * 109.47794 * 300.00257 * 18 16 14 37 37 H 1.08005 * 119.94516 * 359.97302 * 20 19 16 38 38 H 1.07995 * 119.97794 * 180.25040 * 21 20 19 39 39 H 1.07998 * 120.03369 * 179.70871 * 22 21 20 40 40 H 1.08996 * 109.46983 * 180.02562 * 25 24 23 41 41 H 1.08998 * 109.46829 * 300.00102 * 25 24 23 42 42 H 1.08996 * 109.47020 * 60.00266 * 25 24 23 43 43 H 1.07995 * 120.02957 * 0.03402 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6066 1.9811 -0.8428 5 6 3.5421 1.4443 -0.1214 6 1 4.1492 1.8092 0.6938 7 6 4.1411 0.9802 -1.2732 8 7 3.4096 0.7116 -2.3327 9 14 5.9918 0.7330 -1.3291 10 1 6.3290 -0.6065 -0.7836 11 1 6.4617 0.8277 -2.7346 12 1 6.6561 1.7812 -0.5133 13 7 1.6503 2.0982 1.2508 14 6 0.4328 2.6651 1.3637 15 8 -0.3401 2.6327 0.4296 16 6 0.0322 3.3401 2.6501 17 1 0.0623 2.6164 3.4648 18 6 1.0022 4.4849 2.9489 19 6 -1.3651 3.8882 2.5159 20 6 -1.6464 4.8331 1.5463 21 6 -2.9285 5.3337 1.4169 22 6 -3.9298 4.8991 2.2640 23 6 -3.6490 3.9555 3.2411 24 8 -4.6320 3.5267 4.0759 25 6 -5.9321 4.0899 3.8902 26 6 -2.3626 3.4504 3.3652 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8310 0.3848 -3.1429 33 1 2.2686 2.1242 1.9978 34 1 0.9721 5.2086 2.1343 35 1 0.7127 4.9729 3.8797 36 1 2.0130 4.0889 3.0459 37 1 -0.8640 5.1777 0.8862 38 1 -3.1466 6.0686 0.6562 39 1 -4.9303 5.2939 2.1656 40 1 -6.6204 3.6632 4.6197 41 1 -5.8829 5.1702 4.0262 42 1 -6.2846 3.8661 2.8834 43 1 -2.1414 2.7159 4.1254 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183865937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:18 Heat of formation + Delta-G solvation = -83.160845 kcal Electronic energy + Delta-G solvation = -23470.217274 eV Core-core repulsion = 20093.455188 eV Total energy + Delta-G solvation = -3376.762085 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.42185 -40.52260 -38.49828 -36.81358 -34.97169 -34.14890 -32.68636 -31.62745 -30.02581 -28.81058 -28.11268 -25.71883 -24.81591 -23.51151 -22.89059 -21.53309 -20.80999 -19.12611 -18.34918 -17.52574 -17.18421 -17.07206 -16.74644 -16.57253 -16.19776 -16.09769 -15.26549 -15.01780 -14.58568 -14.45443 -14.30565 -14.05351 -13.58300 -13.43414 -13.31293 -13.20454 -13.01653 -12.89354 -12.88904 -12.61023 -12.33868 -12.24837 -12.15554 -12.05479 -11.86662 -11.64723 -11.58869 -11.06990 -10.54352 -10.43600 -9.76196 -9.56289 -9.08781 -8.17453 -6.30134 0.36350 0.54475 1.45213 1.46358 1.55575 1.94217 2.33462 2.41021 2.64687 2.97914 3.14224 3.62903 3.88046 4.04311 4.16733 4.22503 4.29148 4.38265 4.42068 4.44660 4.47175 4.53906 4.59390 4.69773 4.74234 4.76386 4.90490 4.94586 5.06954 5.10991 5.24728 5.26763 5.33873 5.43293 5.52177 5.55750 5.65441 5.70903 5.77337 5.82782 5.97626 6.10564 6.49410 6.79589 7.07132 7.36545 7.67221 8.91127 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030350 B = 0.003481 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.344910 B = 8041.209134 C = 8305.967594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 C 0.279 3.721 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.965 3.035 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.263 1.263 13 N -0.704 5.704 14 C 0.503 3.497 15 O -0.578 6.578 16 C -0.067 4.067 17 H 0.124 0.876 18 C -0.134 4.134 19 C -0.030 4.030 20 C -0.138 4.138 21 C -0.089 4.089 22 C -0.210 4.210 23 C 0.112 3.888 24 O -0.335 6.335 25 C 0.019 3.981 26 C -0.159 4.159 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.023 0.977 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.264 0.736 33 H 0.403 0.597 34 H 0.050 0.950 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.119 0.881 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.315 8.192 14.607 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.152 4.152 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.187 1.187 13 N -0.353 5.353 14 C 0.290 3.710 15 O -0.458 6.458 16 C -0.088 4.088 17 H 0.141 0.859 18 C -0.191 4.191 19 C -0.031 4.031 20 C -0.157 4.157 21 C -0.107 4.107 22 C -0.228 4.228 23 C 0.067 3.933 24 O -0.249 6.249 25 C -0.076 4.076 26 C -0.177 4.177 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.238 0.762 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.138 0.862 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.832 7.964 13.905 20.529 hybrid contribution 1.002 -0.184 -0.649 1.208 sum -11.830 7.781 13.255 19.396 Atomic orbital electron populations 1.21669 0.96837 0.99139 1.00386 1.21706 0.93900 0.99302 1.00244 1.18320 0.93575 0.88860 0.81752 0.98067 1.21555 0.91428 1.43481 1.02038 0.90900 1.25767 1.03046 0.94914 0.94635 1.70140 1.37733 1.44906 1.02776 0.85463 0.79441 0.79032 0.77039 1.19672 1.21565 1.18684 1.46212 1.15549 1.56156 1.17430 1.20928 0.81714 0.78484 0.89900 1.90678 1.52382 1.60669 1.42096 1.20358 0.93162 0.99437 0.95856 0.85857 1.21771 0.98184 0.96260 1.02895 1.19206 0.93877 0.95200 0.94792 1.20916 0.97565 0.98690 0.98481 1.21149 0.92085 0.99180 0.98299 1.21437 1.01438 1.01466 0.98492 1.19052 0.88822 0.94467 0.90939 1.86029 1.19369 1.64952 1.54582 1.23329 0.80794 0.99785 1.03659 1.20396 0.90457 1.03844 1.03030 0.93595 0.93501 0.95748 0.93217 0.93288 0.92737 0.76242 0.93096 0.89271 0.90491 0.87518 0.84070 0.83154 0.86236 0.91457 0.92222 0.84430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.51 71.98 0.61 -4.98 16 2 C -0.11 -5.49 5.50 30.60 0.17 -5.32 16 3 C 0.28 14.17 2.11 44.25 0.09 14.27 16 4 H 0.00 0.09 7.52 -2.39 -0.02 0.07 16 5 C -0.55 -28.69 8.66 25.60 0.22 -28.47 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 7 C 0.02 0.90 5.16 84.65 0.44 1.34 16 8 N -0.92 -53.41 12.16 21.45 0.26 -53.15 16 9 Si 0.97 42.03 29.55 68.60 2.03 44.06 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 13 N -0.70 -28.38 4.91 -446.09 -2.19 -30.58 16 14 C 0.50 19.50 5.59 87.65 0.49 19.99 16 15 O -0.58 -27.35 12.27 -3.04 -0.04 -27.39 16 16 C -0.07 -1.88 2.90 -12.29 -0.04 -1.91 16 17 H 0.12 2.84 7.88 -2.38 -0.02 2.82 16 18 C -0.13 -3.06 8.90 71.98 0.64 -2.42 16 19 C -0.03 -0.89 4.39 -19.88 -0.09 -0.98 16 20 C -0.14 -4.23 7.93 22.28 0.18 -4.05 16 21 C -0.09 -2.31 10.04 22.26 0.22 -2.09 16 22 C -0.21 -4.93 9.04 22.37 0.20 -4.72 16 23 C 0.11 2.91 6.69 22.51 0.15 3.06 16 24 O -0.34 -7.71 10.50 -92.44 -0.97 -8.68 16 25 C 0.02 0.25 9.81 113.37 1.11 1.36 16 26 C -0.16 -4.38 9.61 22.37 0.21 -4.16 16 27 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.05 2.06 5.65 -2.39 -0.01 2.04 16 29 H 0.02 1.20 7.84 -2.39 -0.02 1.18 16 30 H 0.05 2.70 6.80 -2.39 -0.02 2.69 16 31 H 0.05 2.20 8.14 -2.39 -0.02 2.19 16 32 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.40 13.58 7.94 -92.71 -0.74 12.85 16 34 H 0.05 1.29 7.37 -2.39 -0.02 1.28 16 35 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.08 1.61 7.56 -2.39 -0.02 1.59 16 37 H 0.11 3.52 7.51 -2.91 -0.02 3.49 16 38 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 39 H 0.15 2.56 6.30 -2.91 -0.02 2.54 16 40 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 42 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 43 H 0.14 3.35 7.94 -2.91 -0.02 3.33 16 Total: -1.00 -69.43 347.86 3.98 -65.45 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.27 Total: 29.38 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 4.62 Total: -19.09 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -1.93 Total: -83.73 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.01 Total: -36.07 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -69.43 3.98 -65.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183865937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.710 kcal (2) G-P(sol) polarization free energy of solvation -69.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds