Wall clock time and date at job start Tue Mar 31 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47391 * 2 1 4 4 H 1.09000 * 109.47196 * 54.99626 * 3 2 1 5 5 C 1.50696 * 109.47280 * 174.99913 * 3 2 1 6 6 H 1.08004 * 119.99772 * 120.00406 * 5 3 2 7 7 C 1.37874 * 120.00035 * 299.99860 * 5 3 2 8 8 N 1.31512 * 119.99837 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00153 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47200 * 59.99737 * 9 7 5 11 11 H 1.48496 * 109.47130 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46774 * 300.00041 * 9 7 5 13 13 N 1.46506 * 109.47171 * 295.00022 * 3 2 1 14 14 C 1.34773 * 119.99968 * 84.99494 * 13 3 2 15 15 O 1.21283 * 120.00360 * 359.73034 * 14 13 3 16 16 C 1.50706 * 120.00081 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.47012 * 59.72084 * 16 14 13 18 18 C 1.52998 * 109.46708 * 299.72691 * 16 14 13 19 19 C 1.50696 * 109.47259 * 179.72770 * 16 14 13 20 20 C 1.38293 * 119.97424 * 60.00008 * 19 16 14 21 21 C 1.38238 * 120.11225 * 179.97438 * 20 19 16 22 22 C 1.38168 * 120.05486 * 0.02562 * 21 20 19 23 23 C 1.38710 * 119.94706 * 0.02562 * 22 21 20 24 24 O 1.35899 * 120.05635 * 180.02562 * 23 22 21 25 25 C 1.42898 * 117.00258 * 359.97438 * 24 23 22 26 26 C 1.38123 * 119.97129 * 239.72287 * 19 16 14 27 27 H 1.08997 * 109.47115 * 60.00159 * 1 2 3 28 28 H 1.08996 * 109.46808 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47123 * 300.00164 * 1 2 3 30 30 H 1.09000 * 109.46809 * 239.99514 * 2 1 3 31 31 H 1.09007 * 109.46859 * 120.00329 * 2 1 3 32 32 H 0.97002 * 119.99944 * 179.97438 * 8 7 5 33 33 H 0.96998 * 119.99507 * 265.00350 * 13 3 2 34 34 H 1.09002 * 109.46792 * 179.97438 * 18 16 14 35 35 H 1.09002 * 109.47539 * 299.99802 * 18 16 14 36 36 H 1.09005 * 109.47120 * 60.00102 * 18 16 14 37 37 H 1.07993 * 119.94193 * 359.97438 * 20 19 16 38 38 H 1.07997 * 119.97400 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.02795 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.46884 * 59.99975 * 25 24 23 41 41 H 1.08992 * 109.47251 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.47000 * 300.00609 * 25 24 23 43 43 H 1.08002 * 120.02446 * 359.97438 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8811 1.3819 10 1 6.4995 2.2813 1.3822 11 1 6.3977 0.2177 2.6510 12 1 6.5975 0.1471 0.2350 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6643 -1.3670 15 8 -0.3412 2.6279 -0.4360 16 6 0.0364 3.3376 -2.6549 17 1 0.0722 2.6141 -3.4694 18 6 1.0028 4.4863 -2.9504 19 6 -1.3637 3.8798 -2.5257 20 6 -1.6538 4.8194 -1.5533 21 6 -2.9371 5.3190 -1.4326 22 6 -3.9335 4.8801 -2.2832 23 6 -3.6454 3.9369 -3.2587 24 8 -4.6236 3.5040 -4.0969 25 6 -5.9265 4.0625 -3.9167 26 6 -2.3550 3.4420 -3.3822 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8292 -0.0610 2.9500 33 1 2.2721 2.1230 -1.9978 34 1 0.7146 4.9730 -3.8821 35 1 0.9671 5.2099 -2.1359 36 1 2.0156 4.0942 -3.0439 37 1 -0.8765 5.1634 -0.8872 38 1 -3.1610 6.0530 -0.6727 39 1 -4.9358 5.2710 -2.1888 40 1 -5.8807 5.1430 -4.0532 41 1 -6.6106 3.6321 -4.6480 42 1 -6.2820 3.8382 -2.9110 43 1 -2.1268 2.7118 -4.1446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183865952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:22 Heat of formation + Delta-G solvation = -62.677004 kcal Electronic energy + Delta-G solvation = -23476.581072 eV Core-core repulsion = 20100.707232 eV Total energy + Delta-G solvation = -3375.873839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.28166 -39.18503 -37.37153 -35.02843 -33.71383 -32.26493 -30.91840 -30.53090 -28.90481 -27.37477 -26.90983 -24.43464 -23.01390 -22.47269 -21.50630 -19.87270 -19.19125 -17.82909 -16.93681 -16.21769 -15.94728 -15.79736 -15.48652 -15.24693 -14.83408 -14.43916 -13.90074 -13.65170 -13.32822 -13.21049 -12.83643 -12.63907 -12.38966 -12.22951 -11.96421 -11.83496 -11.45599 -11.36374 -11.22628 -11.11807 -10.99062 -10.93682 -10.77922 -10.65117 -10.30111 -10.12976 -9.59069 -9.04252 -8.94910 -8.63366 -8.46670 -8.06165 -7.76077 -6.10574 -4.20040 1.41713 1.60971 3.20975 3.25956 3.31531 3.32393 3.46914 3.82160 4.23157 4.43619 4.71309 4.81363 4.98354 5.01334 5.09269 5.20395 5.20967 5.29354 5.33069 5.50696 5.53112 5.60951 5.76515 5.89119 5.94187 6.14259 6.23728 6.35967 6.43257 6.50336 6.58363 6.70537 6.78610 6.85462 7.08283 7.23974 7.41018 7.42221 7.50785 7.64516 7.76956 7.93234 8.21047 8.71896 8.80576 9.19648 9.47679 10.94607 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030284 B = 0.003488 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.372244 B = 8025.505094 C = 8333.948621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.708 5.708 14 C 0.506 3.494 15 O -0.539 6.539 16 C -0.079 4.079 17 H 0.098 0.902 18 C -0.138 4.138 19 C -0.017 4.017 20 C -0.115 4.115 21 C -0.084 4.084 22 C -0.212 4.212 23 C 0.118 3.882 24 O -0.321 6.321 25 C 0.029 3.971 26 C -0.145 4.145 27 H 0.039 0.961 28 H 0.021 0.979 29 H 0.049 0.951 30 H 0.030 0.970 31 H 0.098 0.902 32 H 0.265 0.735 33 H 0.387 0.613 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.912 8.492 -11.943 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.356 5.356 14 C 0.290 3.710 15 O -0.417 6.417 16 C -0.100 4.100 17 H 0.116 0.884 18 C -0.195 4.195 19 C -0.017 4.017 20 C -0.133 4.133 21 C -0.103 4.103 22 C -0.231 4.231 23 C 0.074 3.926 24 O -0.235 6.235 25 C -0.066 4.066 26 C -0.164 4.164 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.071 0.929 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.426 8.210 -11.205 18.637 hybrid contribution 1.050 0.027 -0.051 1.052 sum -11.376 8.237 -11.256 17.999 Atomic orbital electron populations 1.21832 0.98323 0.97949 1.01276 1.21935 0.92603 0.99909 1.02181 1.18749 0.94041 0.89120 0.81073 0.93385 1.21202 0.90793 1.39021 1.06226 0.92183 1.24882 0.98510 0.94854 0.95419 1.69887 1.35173 1.37570 1.09332 0.86533 0.84991 0.78282 0.77435 1.20216 1.21168 1.20182 1.46467 1.14591 1.56041 1.18467 1.20093 0.82809 0.79460 0.88631 1.90693 1.51101 1.59487 1.40390 1.20395 0.92688 0.98584 0.98372 0.88352 1.21762 0.98374 0.97248 1.02165 1.19138 0.93521 0.94858 0.94204 1.20865 0.96889 0.97580 0.98008 1.20869 0.92640 0.98983 0.97760 1.21133 1.00374 1.02094 0.99461 1.18876 0.88585 0.94539 0.90638 1.86043 1.18184 1.64490 1.54736 1.22996 0.82343 0.98769 1.02481 1.20219 0.90066 1.03509 1.02613 0.94217 0.95990 0.93218 0.95114 0.88384 0.92541 0.78058 0.91847 0.91819 0.91391 0.85900 0.86011 0.85964 0.92871 0.88530 0.92768 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.61 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -13.94 8.73 -34.44 -0.30 -14.24 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.69 11.29 55.43 0.63 -24.06 16 9 Si 0.90 20.51 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.71 -14.31 4.92 -54.93 -0.27 -14.58 16 14 C 0.51 9.76 5.60 -10.98 -0.06 9.70 16 15 O -0.54 -12.32 12.22 5.56 0.07 -12.25 16 16 C -0.08 -1.15 2.90 -92.92 -0.27 -1.42 16 17 H 0.10 1.26 7.87 -51.93 -0.41 0.85 16 18 C -0.14 -1.68 8.90 37.16 0.33 -1.35 16 19 C -0.02 -0.25 4.39 -104.65 -0.46 -0.71 16 20 C -0.12 -1.75 7.93 -39.56 -0.31 -2.06 16 21 C -0.08 -1.12 10.04 -39.61 -0.40 -1.52 16 22 C -0.21 -2.68 9.04 -39.43 -0.36 -3.04 16 23 C 0.12 1.63 6.69 -39.22 -0.26 1.37 16 24 O -0.32 -4.03 10.50 -19.42 -0.20 -4.24 16 25 C 0.03 0.24 9.81 101.05 0.99 1.23 16 26 C -0.15 -2.10 9.61 -39.43 -0.38 -2.48 16 27 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 33 H 0.39 6.80 7.97 -40.82 -0.33 6.48 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.81 7.39 -51.93 -0.38 0.43 16 36 H 0.07 0.78 7.58 -51.93 -0.39 0.38 16 37 H 0.12 1.92 7.51 -52.49 -0.39 1.52 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.12 1.22 6.30 -52.49 -0.33 0.89 16 40 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 43 H 0.13 1.66 7.94 -52.49 -0.42 1.24 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -30.90 346.50 -7.64 -38.55 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.51 Total: 8.16 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -1.56 Total: -12.29 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.36 Total: -38.64 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.14 Total: -16.49 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.90 -7.64 -38.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183865952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.131 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds