Wall clock time and date at job start Tue Mar 31 2020 06:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47391 * 2 1 4 4 H 1.09000 * 109.47196 * 54.99626 * 3 2 1 5 5 C 1.50696 * 109.47280 * 174.99913 * 3 2 1 6 6 H 1.08004 * 119.99772 * 120.00406 * 5 3 2 7 7 C 1.37874 * 120.00035 * 299.99860 * 5 3 2 8 8 N 1.31512 * 119.99837 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00153 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47200 * 59.99737 * 9 7 5 11 11 H 1.48496 * 109.47130 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46774 * 300.00041 * 9 7 5 13 13 N 1.46506 * 109.47171 * 295.00022 * 3 2 1 14 14 C 1.34773 * 119.99968 * 84.99494 * 13 3 2 15 15 O 1.21283 * 120.00360 * 359.73034 * 14 13 3 16 16 C 1.50706 * 120.00081 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.47012 * 59.72084 * 16 14 13 18 18 C 1.52998 * 109.46708 * 299.72691 * 16 14 13 19 19 C 1.50696 * 109.47259 * 179.72770 * 16 14 13 20 20 C 1.38293 * 119.97424 * 60.00008 * 19 16 14 21 21 C 1.38238 * 120.11225 * 179.97438 * 20 19 16 22 22 C 1.38168 * 120.05486 * 0.02562 * 21 20 19 23 23 C 1.38710 * 119.94706 * 0.02562 * 22 21 20 24 24 O 1.35899 * 120.05635 * 180.02562 * 23 22 21 25 25 C 1.42898 * 117.00258 * 359.97438 * 24 23 22 26 26 C 1.38123 * 119.97129 * 239.72287 * 19 16 14 27 27 H 1.08997 * 109.47115 * 60.00159 * 1 2 3 28 28 H 1.08996 * 109.46808 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47123 * 300.00164 * 1 2 3 30 30 H 1.09000 * 109.46809 * 239.99514 * 2 1 3 31 31 H 1.09007 * 109.46859 * 120.00329 * 2 1 3 32 32 H 0.97002 * 119.99944 * 179.97438 * 8 7 5 33 33 H 0.96998 * 119.99507 * 265.00350 * 13 3 2 34 34 H 1.09002 * 109.46792 * 179.97438 * 18 16 14 35 35 H 1.09002 * 109.47539 * 299.99802 * 18 16 14 36 36 H 1.09005 * 109.47120 * 60.00102 * 18 16 14 37 37 H 1.07993 * 119.94193 * 359.97438 * 20 19 16 38 38 H 1.07997 * 119.97400 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.02795 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.46884 * 59.99975 * 25 24 23 41 41 H 1.08992 * 109.47251 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.47000 * 300.00609 * 25 24 23 43 43 H 1.08002 * 120.02446 * 359.97438 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8811 1.3819 10 1 6.4995 2.2813 1.3822 11 1 6.3977 0.2177 2.6510 12 1 6.5975 0.1471 0.2350 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6643 -1.3670 15 8 -0.3412 2.6279 -0.4360 16 6 0.0364 3.3376 -2.6549 17 1 0.0722 2.6141 -3.4694 18 6 1.0028 4.4863 -2.9504 19 6 -1.3637 3.8798 -2.5257 20 6 -1.6538 4.8194 -1.5533 21 6 -2.9371 5.3190 -1.4326 22 6 -3.9335 4.8801 -2.2832 23 6 -3.6454 3.9369 -3.2587 24 8 -4.6236 3.5040 -4.0969 25 6 -5.9265 4.0625 -3.9167 26 6 -2.3550 3.4420 -3.3822 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8292 -0.0610 2.9500 33 1 2.2721 2.1230 -1.9978 34 1 0.7146 4.9730 -3.8821 35 1 0.9671 5.2099 -2.1359 36 1 2.0156 4.0942 -3.0439 37 1 -0.8765 5.1634 -0.8872 38 1 -3.1610 6.0530 -0.6727 39 1 -4.9358 5.2710 -2.1888 40 1 -5.8807 5.1430 -4.0532 41 1 -6.6106 3.6321 -4.6480 42 1 -6.2820 3.8382 -2.9110 43 1 -2.1268 2.7118 -4.1446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183865952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:21 Heat of formation + Delta-G solvation = -81.426509 kcal Electronic energy + Delta-G solvation = -23477.394111 eV Core-core repulsion = 20100.707232 eV Total energy + Delta-G solvation = -3376.686879 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.42418 -40.52497 -38.50113 -36.83441 -34.97502 -34.14479 -32.62631 -31.62774 -30.03049 -28.80666 -28.11404 -25.71925 -24.82111 -23.51279 -22.87132 -21.50005 -20.80936 -19.12828 -18.35129 -17.53440 -17.17629 -17.07390 -16.75260 -16.57430 -16.19564 -16.10622 -15.25858 -15.00974 -14.57937 -14.45694 -14.30480 -14.04139 -13.58931 -13.47160 -13.20838 -13.18567 -13.00592 -12.89564 -12.88180 -12.64456 -12.33411 -12.25282 -12.15250 -12.02788 -11.86508 -11.64206 -11.55857 -11.03531 -10.56491 -10.42397 -9.76427 -9.55331 -9.08900 -8.13822 -6.31049 0.36157 0.54393 1.45795 1.47408 1.55064 1.94000 2.33148 2.40922 2.64742 2.97593 3.15662 3.62642 3.87840 4.03997 4.16543 4.22461 4.28928 4.38106 4.41872 4.44797 4.49985 4.58138 4.59230 4.70362 4.75083 4.78853 4.90289 4.94434 5.07867 5.11262 5.25948 5.27973 5.33734 5.45809 5.51972 5.58354 5.67170 5.71082 5.82391 5.82849 5.97565 6.19795 6.49296 6.77727 7.06953 7.36555 7.66815 8.91206 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030284 B = 0.003488 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.372244 B = 8025.505094 C = 8333.948621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.281 3.719 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.705 5.705 14 C 0.503 3.497 15 O -0.578 6.578 16 C -0.067 4.067 17 H 0.122 0.878 18 C -0.134 4.134 19 C -0.030 4.030 20 C -0.138 4.138 21 C -0.089 4.089 22 C -0.210 4.210 23 C 0.112 3.888 24 O -0.335 6.335 25 C 0.019 3.981 26 C -0.159 4.159 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.023 0.977 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.264 0.736 33 H 0.403 0.597 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.067 0.933 41 H 0.119 0.881 42 H 0.059 0.941 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.164 9.048 -14.060 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.354 5.354 14 C 0.290 3.710 15 O -0.458 6.458 16 C -0.088 4.088 17 H 0.140 0.860 18 C -0.191 4.191 19 C -0.031 4.031 20 C -0.156 4.156 21 C -0.107 4.107 22 C -0.228 4.228 23 C 0.067 3.933 24 O -0.250 6.250 25 C -0.076 4.076 26 C -0.178 4.178 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.237 0.763 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.160 0.840 39 H 0.169 0.831 40 H 0.086 0.914 41 H 0.138 0.862 42 H 0.078 0.922 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.680 8.783 -13.369 20.412 hybrid contribution 0.983 -0.110 0.605 1.159 sum -11.697 8.673 -12.764 19.364 Atomic orbital electron populations 1.21661 0.97139 0.98899 1.00186 1.21789 0.93550 0.99454 1.01189 1.18302 0.93475 0.88962 0.81519 0.98553 1.21567 0.91512 1.38788 1.06618 0.90963 1.25765 1.03196 0.94463 0.95083 1.70049 1.37081 1.38436 1.09866 0.85453 0.79284 0.78442 0.77490 1.19631 1.21373 1.18913 1.46225 1.15581 1.56111 1.17454 1.20925 0.81713 0.78501 0.89886 1.90674 1.52115 1.60683 1.42350 1.20360 0.93179 0.99479 0.95822 0.85970 1.21769 0.98197 0.96189 1.02935 1.19207 0.93876 0.95260 0.94748 1.20914 0.97563 0.98683 0.98450 1.21150 0.92102 0.99156 0.98287 1.21437 1.01466 1.01397 0.98533 1.19051 0.88852 0.94475 0.90908 1.86028 1.19457 1.64975 1.54497 1.23330 0.80690 0.99856 1.03689 1.20395 0.90468 1.03950 1.02964 0.93765 0.93879 0.95765 0.94095 0.91145 0.92695 0.76258 0.89287 0.93010 0.90501 0.87454 0.84019 0.83145 0.91435 0.86244 0.92224 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.51 71.98 0.61 -5.02 16 2 C -0.12 -6.02 5.45 30.59 0.17 -5.86 16 3 C 0.28 14.36 2.24 44.24 0.10 14.46 16 4 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 5 C -0.55 -28.71 8.73 25.60 0.22 -28.49 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 7 C 0.01 0.80 5.29 84.65 0.45 1.25 16 8 N -0.92 -52.64 11.29 21.45 0.24 -52.40 16 9 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 11 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 N -0.70 -28.55 4.92 -446.10 -2.19 -30.75 16 14 C 0.50 19.55 5.60 87.66 0.49 20.04 16 15 O -0.58 -27.33 12.22 -3.04 -0.04 -27.37 16 16 C -0.07 -1.89 2.90 -12.29 -0.04 -1.93 16 17 H 0.12 2.86 7.87 -2.39 -0.02 2.84 16 18 C -0.13 -3.05 8.90 71.98 0.64 -2.40 16 19 C -0.03 -0.90 4.39 -19.88 -0.09 -0.99 16 20 C -0.14 -4.20 7.93 22.28 0.18 -4.02 16 21 C -0.09 -2.29 10.04 22.25 0.22 -2.07 16 22 C -0.21 -4.92 9.04 22.37 0.20 -4.72 16 23 C 0.11 2.92 6.69 22.51 0.15 3.07 16 24 O -0.34 -7.75 10.50 -92.42 -0.97 -8.72 16 25 C 0.02 0.25 9.81 113.37 1.11 1.36 16 26 C -0.16 -4.41 9.61 22.37 0.21 -4.20 16 27 H 0.04 1.98 5.64 -2.39 -0.01 1.96 16 28 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.02 1.20 7.84 -2.39 -0.02 1.18 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 3.93 5.95 -2.38 -0.01 3.92 16 32 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.40 13.72 7.97 -92.71 -0.74 12.98 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.30 7.39 -2.39 -0.02 1.28 16 36 H 0.08 1.60 7.58 -2.38 -0.02 1.59 16 37 H 0.11 3.51 7.51 -2.91 -0.02 3.49 16 38 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 39 H 0.15 2.56 6.30 -2.91 -0.02 2.54 16 40 H 0.07 0.73 7.66 -2.38 -0.02 0.71 16 41 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 43 H 0.14 3.37 7.94 -2.91 -0.02 3.35 16 Total: -1.00 -68.71 346.50 3.98 -64.74 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: 0.27 Total: 30.01 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 4.64 Total: -19.50 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -1.95 Total: -83.14 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -1.01 Total: -36.09 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -68.71 3.98 -64.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183865952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.687 kcal (2) G-P(sol) polarization free energy of solvation -68.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds