Wall clock time and date at job start Tue Mar 31 2020 06:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47067 * 2 1 4 4 H 1.09000 * 109.47748 * 305.00426 * 3 2 1 5 5 C 1.50700 * 109.46936 * 184.99922 * 3 2 1 6 6 H 1.08000 * 120.00338 * 239.99744 * 5 3 2 7 7 C 1.37880 * 119.99910 * 60.01104 * 5 3 2 8 8 N 1.31516 * 119.99795 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00252 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47312 * 59.99217 * 9 7 5 11 11 H 1.48502 * 109.47507 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46908 * 299.99332 * 9 7 5 13 13 N 1.46507 * 109.46805 * 65.00571 * 3 2 1 14 14 C 1.34771 * 119.99882 * 274.99807 * 13 3 2 15 15 O 1.21281 * 120.00159 * 359.97438 * 14 13 3 16 16 C 1.50694 * 120.00102 * 180.02562 * 14 13 3 17 17 H 1.09007 * 109.47475 * 60.00000 * 16 14 13 18 18 C 1.52998 * 109.47411 * 299.99958 * 16 14 13 19 19 C 1.50703 * 109.47586 * 179.97438 * 16 14 13 20 20 C 1.38294 * 119.97003 * 60.01819 * 19 16 14 21 21 C 1.38232 * 120.11124 * 179.97438 * 20 19 16 22 22 C 1.38173 * 120.05823 * 359.97438 * 21 20 19 23 23 C 1.38705 * 119.94203 * 359.76822 * 22 21 20 24 24 O 1.35904 * 120.05924 * 180.25551 * 23 22 21 25 25 C 1.42903 * 116.99671 * 0.25297 * 24 23 22 26 26 C 1.38122 * 119.97497 * 240.00490 * 19 16 14 27 27 H 1.09001 * 109.46728 * 299.99729 * 1 2 3 28 28 H 1.09005 * 109.47114 * 59.99089 * 1 2 3 29 29 H 1.08991 * 109.47387 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47115 * 240.00861 * 2 1 3 31 31 H 1.08992 * 109.47488 * 120.00386 * 2 1 3 32 32 H 0.96999 * 119.99988 * 180.02562 * 8 7 5 33 33 H 0.97004 * 120.00053 * 94.99792 * 13 3 2 34 34 H 1.09007 * 109.46836 * 300.00433 * 18 16 14 35 35 H 1.09007 * 109.46905 * 59.99496 * 18 16 14 36 36 H 1.08995 * 109.47581 * 180.02562 * 18 16 14 37 37 H 1.08003 * 119.94130 * 0.02562 * 20 19 16 38 38 H 1.08008 * 119.97134 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.02588 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.46945 * 300.00498 * 25 24 23 41 41 H 1.09006 * 109.46787 * 59.99781 * 25 24 23 42 42 H 1.08998 * 109.47112 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.02504 * 0.02562 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9817 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3370 -2.1730 9 14 6.0049 0.8800 -1.3813 10 1 6.5966 0.1452 -0.2345 11 1 6.3978 0.2159 -2.6501 12 1 6.5005 2.2800 -1.3809 13 7 1.6525 2.0974 1.2520 14 6 0.4352 2.6643 1.3672 15 8 -0.3392 2.6327 0.4344 16 6 0.0368 3.3384 2.6547 17 1 0.7282 4.1540 2.8670 18 6 0.0809 2.3221 3.7975 19 6 -1.3607 3.8868 2.5232 20 6 -2.4150 3.0337 2.2526 21 6 -3.6981 3.5335 2.1319 22 6 -3.9305 4.8873 2.2819 23 6 -2.8756 5.7443 2.5586 24 8 -3.1022 7.0755 2.7118 25 6 -4.4529 7.5230 2.5800 26 6 -1.5876 5.2410 2.6733 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8292 -0.0614 -2.9497 33 1 2.2720 2.1230 1.9979 34 1 -0.6105 1.5065 3.5852 35 1 1.0919 1.9258 3.8925 36 1 -0.2077 2.8095 4.7286 37 1 -2.2356 1.9751 2.1362 38 1 -4.5199 2.8651 1.9209 39 1 -4.9332 5.2772 2.1879 40 1 -4.8221 7.2756 1.5847 41 1 -5.0731 7.0320 3.3300 42 1 -4.4939 8.6025 2.7252 43 1 -0.7639 5.9068 2.8844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183865971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:24 Heat of formation + Delta-G solvation = -62.760027 kcal Electronic energy + Delta-G solvation = -23499.205054 eV Core-core repulsion = 20123.327614 eV Total energy + Delta-G solvation = -3375.877440 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.28510 -39.19195 -37.36404 -35.02653 -33.71201 -32.26237 -30.89297 -30.58759 -28.92392 -27.37578 -26.88046 -24.44257 -23.03861 -22.48124 -21.49663 -19.88781 -19.18595 -17.82685 -16.90981 -16.24094 -16.00392 -15.79004 -15.48374 -15.24888 -14.69157 -14.47691 -14.07700 -13.56719 -13.37685 -13.13694 -12.79601 -12.61822 -12.41782 -12.35359 -11.96563 -11.77926 -11.54060 -11.33796 -11.24122 -11.10462 -10.97243 -10.94513 -10.78838 -10.64324 -10.30388 -10.14191 -9.60503 -9.04367 -8.95358 -8.63170 -8.46411 -8.06071 -7.76637 -6.10472 -4.19860 1.41696 1.60863 3.21280 3.26375 3.31840 3.32849 3.46955 3.82104 4.22903 4.44267 4.71037 4.81390 4.98493 5.01589 5.08961 5.18974 5.22030 5.29575 5.31925 5.49743 5.52702 5.60986 5.76208 5.87557 5.93385 6.13907 6.21140 6.35931 6.40762 6.47649 6.58011 6.68037 6.78204 6.85444 7.06100 7.22525 7.39720 7.42397 7.50402 7.64318 7.76614 7.93370 8.20818 8.71926 8.80740 9.19702 9.47848 10.94733 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.003517 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.187064 B = 7958.784116 C = 8233.504648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.708 5.708 14 C 0.506 3.494 15 O -0.539 6.539 16 C -0.079 4.079 17 H 0.099 0.901 18 C -0.138 4.138 19 C -0.017 4.017 20 C -0.115 4.115 21 C -0.085 4.085 22 C -0.212 4.212 23 C 0.118 3.882 24 O -0.321 6.321 25 C 0.029 3.971 26 C -0.145 4.145 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.387 0.613 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.096 0.904 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.233 7.749 12.259 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.356 5.356 14 C 0.290 3.710 15 O -0.417 6.417 16 C -0.101 4.101 17 H 0.117 0.883 18 C -0.195 4.195 19 C -0.017 4.017 20 C -0.133 4.133 21 C -0.103 4.103 22 C -0.230 4.230 23 C 0.074 3.926 24 O -0.234 6.234 25 C -0.066 4.066 26 C -0.164 4.164 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.620 7.765 11.405 18.698 hybrid contribution 1.020 -0.045 0.079 1.024 sum -11.600 7.719 11.483 18.056 Atomic orbital electron populations 1.21836 0.98398 0.97898 1.01237 1.21924 0.92575 0.99871 1.02185 1.18754 0.94054 0.89123 0.81092 0.93403 1.21211 0.90819 1.39014 1.06246 0.92183 1.24884 0.98533 0.94847 0.95403 1.69886 1.35179 1.37570 1.09345 0.86530 0.84966 0.78301 0.77422 1.20184 1.21167 1.20198 1.46468 1.14579 1.56080 1.18440 1.20089 0.82894 0.79409 0.88592 1.90692 1.51317 1.59449 1.40220 1.20397 0.94416 0.99509 0.95759 0.88260 1.21759 1.02912 0.98260 0.96586 1.19140 0.94154 0.92098 0.96355 1.20853 0.91860 1.00178 1.00436 1.20866 0.97010 0.94390 0.98022 1.21131 0.98183 0.94600 1.09126 1.18878 0.94079 0.82341 0.97351 1.86048 1.29218 1.21146 1.87029 1.22998 0.81837 1.00576 1.01180 1.20229 0.94594 0.94754 1.06774 0.94232 0.93205 0.95991 0.88397 0.95099 0.92543 0.78057 0.91900 0.91442 0.91802 0.85957 0.86027 0.85959 0.92759 0.92881 0.88528 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.52 37.16 0.32 -2.69 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.76 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.71 -14.32 4.91 -54.93 -0.27 -14.59 16 14 C 0.51 9.76 5.59 -10.99 -0.06 9.70 16 15 O -0.54 -12.33 12.25 5.56 0.07 -12.26 16 16 C -0.08 -1.16 2.90 -92.93 -0.27 -1.43 16 17 H 0.10 1.29 7.87 -51.92 -0.41 0.88 16 18 C -0.14 -1.64 8.90 37.16 0.33 -1.31 16 19 C -0.02 -0.26 4.40 -104.64 -0.46 -0.72 16 20 C -0.12 -1.73 7.93 -39.56 -0.31 -2.05 16 21 C -0.08 -1.13 10.04 -39.61 -0.40 -1.52 16 22 C -0.21 -2.68 9.04 -39.43 -0.36 -3.03 16 23 C 0.12 1.64 6.69 -39.22 -0.26 1.37 16 24 O -0.32 -4.05 10.50 -19.44 -0.20 -4.26 16 25 C 0.03 0.24 9.81 101.05 0.99 1.23 16 26 C -0.14 -2.10 9.61 -39.43 -0.38 -2.48 16 27 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 28 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.39 6.80 7.96 -40.82 -0.32 6.48 16 34 H 0.06 0.78 7.39 -51.92 -0.38 0.40 16 35 H 0.07 0.75 7.56 -51.93 -0.39 0.36 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.12 1.88 7.51 -52.48 -0.39 1.49 16 38 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 39 H 0.12 1.22 6.30 -52.49 -0.33 0.89 16 40 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 41 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.13 1.68 7.94 -52.49 -0.42 1.26 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -30.98 346.50 -7.64 -38.62 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.51 Total: 7.95 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -1.56 Total: -12.15 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.36 Total: -38.69 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.14 Total: -16.52 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.98 -7.64 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183865971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.137 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds