Wall clock time and date at job start Tue Mar 31 2020 06:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47067 * 2 1 4 4 H 1.09000 * 109.47748 * 305.00426 * 3 2 1 5 5 C 1.50700 * 109.46936 * 184.99922 * 3 2 1 6 6 H 1.08000 * 120.00338 * 239.99744 * 5 3 2 7 7 C 1.37880 * 119.99910 * 60.01104 * 5 3 2 8 8 N 1.31516 * 119.99795 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00252 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47312 * 59.99217 * 9 7 5 11 11 H 1.48502 * 109.47507 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46908 * 299.99332 * 9 7 5 13 13 N 1.46507 * 109.46805 * 65.00571 * 3 2 1 14 14 C 1.34771 * 119.99882 * 274.99807 * 13 3 2 15 15 O 1.21281 * 120.00159 * 359.97438 * 14 13 3 16 16 C 1.50694 * 120.00102 * 180.02562 * 14 13 3 17 17 H 1.09007 * 109.47475 * 60.00000 * 16 14 13 18 18 C 1.52998 * 109.47411 * 299.99958 * 16 14 13 19 19 C 1.50703 * 109.47586 * 179.97438 * 16 14 13 20 20 C 1.38294 * 119.97003 * 60.01819 * 19 16 14 21 21 C 1.38232 * 120.11124 * 179.97438 * 20 19 16 22 22 C 1.38173 * 120.05823 * 359.97438 * 21 20 19 23 23 C 1.38705 * 119.94203 * 359.76822 * 22 21 20 24 24 O 1.35904 * 120.05924 * 180.25551 * 23 22 21 25 25 C 1.42903 * 116.99671 * 0.25297 * 24 23 22 26 26 C 1.38122 * 119.97497 * 240.00490 * 19 16 14 27 27 H 1.09001 * 109.46728 * 299.99729 * 1 2 3 28 28 H 1.09005 * 109.47114 * 59.99089 * 1 2 3 29 29 H 1.08991 * 109.47387 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47115 * 240.00861 * 2 1 3 31 31 H 1.08992 * 109.47488 * 120.00386 * 2 1 3 32 32 H 0.96999 * 119.99988 * 180.02562 * 8 7 5 33 33 H 0.97004 * 120.00053 * 94.99792 * 13 3 2 34 34 H 1.09007 * 109.46836 * 300.00433 * 18 16 14 35 35 H 1.09007 * 109.46905 * 59.99496 * 18 16 14 36 36 H 1.08995 * 109.47581 * 180.02562 * 18 16 14 37 37 H 1.08003 * 119.94130 * 0.02562 * 20 19 16 38 38 H 1.08008 * 119.97134 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.02588 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.46945 * 300.00498 * 25 24 23 41 41 H 1.09006 * 109.46787 * 59.99781 * 25 24 23 42 42 H 1.08998 * 109.47112 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.02504 * 0.02562 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9817 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3370 -2.1730 9 14 6.0049 0.8800 -1.3813 10 1 6.5966 0.1452 -0.2345 11 1 6.3978 0.2159 -2.6501 12 1 6.5005 2.2800 -1.3809 13 7 1.6525 2.0974 1.2520 14 6 0.4352 2.6643 1.3672 15 8 -0.3392 2.6327 0.4344 16 6 0.0368 3.3384 2.6547 17 1 0.7282 4.1540 2.8670 18 6 0.0809 2.3221 3.7975 19 6 -1.3607 3.8868 2.5232 20 6 -2.4150 3.0337 2.2526 21 6 -3.6981 3.5335 2.1319 22 6 -3.9305 4.8873 2.2819 23 6 -2.8756 5.7443 2.5586 24 8 -3.1022 7.0755 2.7118 25 6 -4.4529 7.5230 2.5800 26 6 -1.5876 5.2410 2.6733 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8292 -0.0614 -2.9497 33 1 2.2720 2.1230 1.9979 34 1 -0.6105 1.5065 3.5852 35 1 1.0919 1.9258 3.8925 36 1 -0.2077 2.8095 4.7286 37 1 -2.2356 1.9751 2.1362 38 1 -4.5199 2.8651 1.9209 39 1 -4.9332 5.2772 2.1879 40 1 -4.8221 7.2756 1.5847 41 1 -5.0731 7.0320 3.3300 42 1 -4.4939 8.6025 2.7252 43 1 -0.7639 5.9068 2.8844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183865971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:24 Heat of formation + Delta-G solvation = -81.630284 kcal Electronic energy + Delta-G solvation = -23500.023329 eV Core-core repulsion = 20123.327614 eV Total energy + Delta-G solvation = -3376.695715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.43001 -40.52791 -38.49130 -36.83128 -34.96445 -34.14192 -32.61843 -31.64841 -30.03545 -28.77771 -28.11499 -25.69253 -24.85476 -23.51643 -22.84638 -21.50706 -20.80151 -19.11875 -18.33294 -17.62581 -17.13047 -17.08406 -16.73205 -16.57916 -16.17502 -16.04816 -15.45649 -14.80145 -14.59705 -14.51328 -14.30463 -13.94838 -13.67595 -13.42480 -13.20733 -13.17511 -13.05639 -12.90718 -12.86010 -12.63901 -12.30925 -12.25044 -12.15034 -12.00856 -11.86141 -11.63983 -11.54819 -11.03017 -10.57190 -10.41837 -9.75914 -9.55568 -9.08781 -8.14250 -6.31535 0.36340 0.54723 1.45382 1.47074 1.54697 1.94075 2.32838 2.40929 2.64792 2.97873 3.15047 3.62825 3.87945 4.03684 4.16736 4.23015 4.29024 4.37906 4.41496 4.44894 4.52176 4.59253 4.60823 4.71390 4.74752 4.79850 4.90954 4.95275 5.09169 5.10684 5.26992 5.29700 5.34082 5.47214 5.52657 5.59164 5.67240 5.71025 5.82579 5.84291 5.97841 6.20463 6.49278 6.77327 7.06903 7.36117 7.66724 8.90686 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.003517 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.187064 B = 7958.784116 C = 8233.504648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.006 1.006 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.705 5.705 14 C 0.503 3.497 15 O -0.578 6.578 16 C -0.068 4.068 17 H 0.119 0.881 18 C -0.133 4.133 19 C -0.031 4.031 20 C -0.135 4.135 21 C -0.089 4.089 22 C -0.210 4.210 23 C 0.111 3.889 24 O -0.336 6.336 25 C 0.019 3.981 26 C -0.161 4.161 27 H 0.047 0.953 28 H 0.022 0.978 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.264 0.736 33 H 0.402 0.598 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.119 0.881 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.400 8.544 14.214 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.012 0.988 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.354 5.354 14 C 0.290 3.710 15 O -0.458 6.458 16 C -0.089 4.089 17 H 0.137 0.863 18 C -0.190 4.190 19 C -0.032 4.032 20 C -0.154 4.154 21 C -0.107 4.107 22 C -0.228 4.228 23 C 0.066 3.934 24 O -0.251 6.251 25 C -0.076 4.076 26 C -0.180 4.180 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.237 0.763 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.129 0.871 38 H 0.161 0.839 39 H 0.169 0.831 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.137 0.863 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.788 8.577 13.407 20.417 hybrid contribution 0.953 -0.201 -0.548 1.118 sum -11.835 8.375 12.859 19.379 Atomic orbital electron populations 1.21664 0.96957 0.98965 1.00293 1.21763 0.93759 0.99160 1.01166 1.18309 0.93407 0.89131 0.81459 0.98780 1.21583 0.91614 1.38832 1.06648 0.91050 1.25766 1.03218 0.94451 0.95066 1.70049 1.37079 1.38391 1.09864 0.85453 0.79268 0.78407 0.77535 1.18836 1.21320 1.19734 1.46229 1.15550 1.56177 1.17415 1.20920 0.81783 0.78480 0.89829 1.90674 1.52298 1.60693 1.42168 1.20361 0.94746 1.00210 0.93600 0.86304 1.21769 1.03429 0.97457 0.96354 1.19221 0.94227 0.92517 0.97213 1.20921 0.92942 0.99789 1.01729 1.21166 0.96994 0.95240 0.97287 1.21442 0.99326 0.94146 1.07927 1.19053 0.94174 0.83207 0.96942 1.86031 1.31838 1.20356 1.86838 1.23330 0.80101 1.02096 1.02025 1.20406 0.95551 0.94680 1.07350 0.93366 0.95901 0.93777 0.91291 0.93996 0.92686 0.76263 0.92673 0.90433 0.89377 0.87102 0.83887 0.83148 0.92216 0.91393 0.86288 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.52 71.98 0.61 -4.84 16 2 C -0.12 -5.87 5.45 30.60 0.17 -5.71 16 3 C 0.28 14.35 2.24 44.24 0.10 14.45 16 4 H -0.01 -0.35 7.58 -2.39 -0.02 -0.37 16 5 C -0.55 -28.99 8.73 25.60 0.22 -28.77 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.81 5.29 84.66 0.45 1.26 16 8 N -0.92 -52.72 11.29 21.45 0.24 -52.47 16 9 Si 0.97 42.15 29.54 68.60 2.03 44.18 16 10 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 N -0.70 -28.56 4.91 -446.09 -2.19 -30.76 16 14 C 0.50 19.54 5.59 87.66 0.49 20.03 16 15 O -0.58 -27.30 12.25 -3.03 -0.04 -27.34 16 16 C -0.07 -1.92 2.90 -12.29 -0.04 -1.95 16 17 H 0.12 2.87 7.87 -2.38 -0.02 2.85 16 18 C -0.13 -2.92 8.90 71.98 0.64 -2.27 16 19 C -0.03 -0.93 4.40 -19.88 -0.09 -1.01 16 20 C -0.14 -4.04 7.93 22.28 0.18 -3.87 16 21 C -0.09 -2.26 10.04 22.25 0.22 -2.03 16 22 C -0.21 -4.92 9.04 22.37 0.20 -4.72 16 23 C 0.11 2.93 6.69 22.51 0.15 3.08 16 24 O -0.34 -7.92 10.50 -92.47 -0.97 -8.90 16 25 C 0.02 0.26 9.81 113.37 1.11 1.37 16 26 C -0.16 -4.55 9.61 22.37 0.21 -4.34 16 27 H 0.05 2.05 5.65 -2.39 -0.01 2.04 16 28 H 0.02 1.11 7.85 -2.38 -0.02 1.09 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 3.82 5.95 -2.38 -0.01 3.81 16 31 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.40 13.73 7.96 -92.71 -0.74 12.99 16 34 H 0.05 1.30 7.39 -2.38 -0.02 1.28 16 35 H 0.08 1.54 7.56 -2.38 -0.02 1.52 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.11 3.47 7.51 -2.91 -0.02 3.45 16 38 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 39 H 0.15 2.55 6.30 -2.91 -0.02 2.53 16 40 H 0.06 0.77 7.65 -2.39 -0.02 0.75 16 41 H 0.07 0.75 7.67 -2.38 -0.02 0.73 16 42 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.13 3.44 7.94 -2.91 -0.02 3.41 16 Total: -1.00 -69.04 346.50 3.98 -65.06 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.27 Total: 29.54 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 4.64 Total: -19.32 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -1.95 Total: -83.23 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -1.01 Total: -36.23 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -69.04 3.98 -65.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183865971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.566 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds