Wall clock time and date at job start Tue Mar 31 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47386 * 2 1 4 4 H 1.08996 * 109.46763 * 54.99568 * 3 2 1 5 5 C 1.50695 * 109.47394 * 174.99824 * 3 2 1 6 6 H 1.08002 * 120.00201 * 119.99458 * 5 3 2 7 7 C 1.37883 * 119.99946 * 300.00210 * 5 3 2 8 8 N 1.31512 * 119.99827 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99836 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46857 * 90.00586 * 9 7 5 11 11 H 1.48502 * 109.46948 * 210.00172 * 9 7 5 12 12 H 1.48495 * 109.47333 * 330.00316 * 9 7 5 13 13 N 1.46500 * 109.46630 * 294.99658 * 3 2 1 14 14 C 1.34780 * 119.99970 * 85.00098 * 13 3 2 15 15 O 1.21280 * 120.00031 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00056 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47149 * 59.99728 * 16 14 13 18 18 C 1.53001 * 109.46983 * 299.99797 * 16 14 13 19 19 O 1.42902 * 109.47113 * 179.97438 * 16 14 13 20 20 C 1.35903 * 117.00123 * 204.94775 * 19 16 14 21 21 C 1.38729 * 120.05685 * 174.27807 * 20 19 16 22 22 C 1.38141 * 119.94149 * 179.70225 * 21 20 19 23 23 C 1.38265 * 120.05784 * 0.59143 * 22 21 20 24 24 C 1.50700 * 119.94745 * 179.70196 * 23 22 21 25 25 C 1.38264 * 120.10940 * 359.68424 * 23 22 21 26 26 C 1.38139 * 120.05728 * 0.02562 * 25 23 22 27 27 H 1.09004 * 109.47343 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47585 * 300.00033 * 1 2 3 29 29 H 1.09008 * 109.47243 * 60.00534 * 1 2 3 30 30 H 1.09000 * 109.47383 * 239.99214 * 2 1 3 31 31 H 1.09007 * 109.46845 * 119.99830 * 2 1 3 32 32 H 0.96999 * 120.00039 * 180.02562 * 8 7 5 33 33 H 0.97003 * 120.00357 * 264.99684 * 13 3 2 34 34 H 1.09000 * 109.47122 * 299.99948 * 18 16 14 35 35 H 1.08999 * 109.47197 * 60.00426 * 18 16 14 36 36 H 1.09001 * 109.47311 * 179.97438 * 18 16 14 37 37 H 1.08000 * 120.02814 * 359.97438 * 21 20 19 38 38 H 1.07999 * 119.97095 * 180.27459 * 22 21 20 39 39 H 1.08999 * 109.46924 * 269.98283 * 24 23 22 40 40 H 1.08999 * 109.46971 * 29.97705 * 24 23 22 41 41 H 1.09001 * 109.47289 * 149.97948 * 24 23 22 42 42 H 1.08001 * 119.97142 * 179.97438 * 25 23 22 43 43 H 1.08004 * 120.03238 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2281 8 7 5.4539 0.8804 1.3364 9 14 3.0962 0.1100 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7939 0.2360 3.8755 12 1 1.7880 0.8093 2.6394 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4346 16 6 0.0367 3.3384 -2.6546 17 1 0.0682 2.6143 -3.4688 18 6 1.0073 4.4831 -2.9525 19 8 -1.2889 3.8574 -2.5302 20 6 -1.9982 4.0197 -3.6780 21 6 -3.3296 4.4055 -3.6233 22 6 -4.0467 4.5757 -4.7917 23 6 -3.4421 4.3499 -6.0145 24 6 -4.2286 4.5298 -7.2873 25 6 -2.1169 3.9597 -6.0715 26 6 -1.3937 3.7940 -4.9062 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 5.8770 0.4819 2.1130 33 1 2.2720 2.1230 -1.9979 34 1 0.9759 5.2072 -2.1384 35 1 2.0182 4.0869 -3.0476 36 1 0.7194 4.9705 -3.8840 37 1 -3.8039 4.5770 -2.6683 38 1 -5.0820 4.8804 -4.7499 39 1 -4.7067 3.5876 -7.5552 40 1 -4.9909 5.2946 -7.1383 41 1 -3.5572 4.8374 -8.0890 42 1 -1.6469 3.7836 -7.0278 43 1 -0.3587 3.4888 -4.9511 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183873872.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:59 Heat of formation + Delta-G solvation = -53.594969 kcal Electronic energy + Delta-G solvation = -23294.491407 eV Core-core repulsion = 19919.011394 eV Total energy + Delta-G solvation = -3375.480013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.57073 -39.21354 -37.62038 -35.29843 -33.04000 -32.29794 -31.82280 -31.23864 -30.47028 -27.53046 -26.62468 -24.47170 -23.15056 -22.60417 -21.53021 -20.51865 -19.60859 -18.34606 -17.59477 -16.36263 -15.81756 -15.54905 -15.49890 -15.34529 -14.53164 -14.44098 -14.33980 -13.83722 -13.65384 -13.58529 -13.17250 -12.95252 -12.61242 -12.53978 -12.27806 -12.16073 -11.89870 -11.80551 -11.66001 -11.63713 -11.14103 -10.94164 -10.91879 -10.78808 -10.64634 -9.95762 -9.58207 -9.28066 -9.16186 -9.09333 -8.79055 -8.15512 -8.10881 -6.24503 -4.27403 1.19860 1.29148 2.86305 3.09776 3.21674 3.33943 3.39138 3.61660 4.00647 4.28923 4.62732 4.66520 4.72325 4.86167 4.94691 5.05964 5.09380 5.11982 5.19594 5.33689 5.38256 5.56303 5.57124 5.60851 5.73207 5.90345 5.93478 5.99875 6.05315 6.15032 6.16952 6.24804 6.45250 6.61764 6.64853 6.67717 6.79968 6.92402 7.18596 7.24437 7.38127 7.46140 8.08754 8.44507 8.70973 8.84292 9.35969 10.87391 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034812 B = 0.003306 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.133447 B = 8468.409962 C = 8797.459529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.244 3.756 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.695 5.695 14 C 0.508 3.492 15 O -0.526 6.526 16 C 0.065 3.935 17 H 0.094 0.906 18 C -0.175 4.175 19 O -0.283 6.283 20 C 0.132 3.868 21 C -0.148 4.148 22 C -0.081 4.081 23 C -0.133 4.133 24 C -0.107 4.107 25 C -0.080 4.080 26 C -0.210 4.210 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.268 0.732 33 H 0.395 0.605 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.123 0.877 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.663 5.946 -15.818 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.141 3.859 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.345 5.345 14 C 0.291 3.709 15 O -0.403 6.403 16 C 0.005 3.995 17 H 0.112 0.888 18 C -0.233 4.233 19 O -0.195 6.195 20 C 0.086 3.914 21 C -0.167 4.167 22 C -0.099 4.099 23 C -0.133 4.133 24 C -0.164 4.164 25 C -0.098 4.098 26 C -0.228 4.228 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.229 0.771 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.141 0.859 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.097 5.908 -14.799 21.951 hybrid contribution 0.162 -0.603 0.231 0.666 sum -14.935 5.305 -14.568 21.527 Atomic orbital electron populations 1.21883 0.96905 0.99139 1.02264 1.22303 0.94362 0.99910 1.01230 1.19187 0.95721 0.88471 0.82496 0.93170 1.21016 0.88438 1.39980 1.07929 0.90125 1.24824 0.94871 0.95104 0.97647 1.69860 1.08680 1.44371 1.29859 0.86914 0.81010 0.79983 0.80929 1.20192 1.22115 1.18410 1.46073 1.14190 1.55990 1.18269 1.19858 0.83135 0.79602 0.88331 1.90708 1.51132 1.58657 1.39766 1.22329 0.82042 0.96847 0.98322 0.88848 1.22331 0.99134 0.98533 1.03277 1.86235 1.26133 1.78659 1.28486 1.19129 0.91621 0.95416 0.85240 1.20466 0.91651 1.05070 0.99500 1.20825 0.99414 0.98578 0.91092 1.19805 0.94783 1.03473 0.95287 1.20697 0.99425 1.01858 0.94435 1.20806 0.93558 0.97775 0.97651 1.21336 1.01287 1.08053 0.92138 0.94854 0.92798 0.93087 0.92213 0.92641 0.92228 0.77148 0.90602 0.89875 0.91151 0.85063 0.85543 0.91563 0.91803 0.91830 0.85917 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.15 0.32 -2.62 16 2 C -0.14 -3.06 5.11 -26.73 -0.14 -3.20 16 3 C 0.24 5.68 1.83 -69.08 -0.13 5.55 16 4 H 0.05 1.30 6.63 -51.93 -0.34 0.96 16 5 C -0.54 -14.13 9.31 -34.44 -0.32 -14.45 16 6 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.04 13.96 55.43 0.77 -25.26 16 9 Si 0.88 21.56 24.41 -169.99 -4.15 17.41 16 10 H -0.28 -6.52 6.83 56.52 0.39 -6.13 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 13 N -0.70 -13.26 4.91 -54.94 -0.27 -13.53 16 14 C 0.51 9.51 5.80 -10.99 -0.06 9.44 16 15 O -0.53 -11.90 13.64 -14.35 -0.20 -12.10 16 16 C 0.06 0.93 2.64 -27.88 -0.07 0.86 16 17 H 0.09 1.13 6.31 -51.93 -0.33 0.80 16 18 C -0.18 -2.10 9.07 37.16 0.34 -1.76 16 19 O -0.28 -4.52 9.33 -39.35 -0.37 -4.89 16 20 C 0.13 1.78 6.60 -39.22 -0.26 1.52 16 21 C -0.15 -1.81 9.99 -39.44 -0.39 -2.21 16 22 C -0.08 -0.82 9.69 -39.61 -0.38 -1.20 16 23 C -0.13 -1.27 5.88 -104.60 -0.62 -1.89 16 24 C -0.11 -0.73 10.01 36.01 0.36 -0.36 16 25 C -0.08 -0.79 9.69 -39.61 -0.38 -1.17 16 26 C -0.21 -2.38 8.24 -39.43 -0.33 -2.70 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 29 H 0.05 1.02 5.65 -51.92 -0.29 0.73 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.28 3.22 -51.92 -0.17 1.12 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.39 6.45 7.96 -40.82 -0.32 6.13 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.89 7.56 -51.93 -0.39 0.50 16 36 H 0.07 0.71 6.91 -51.93 -0.36 0.35 16 37 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 41 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.13 1.29 5.43 -52.48 -0.28 1.00 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -31.85 341.27 -7.53 -39.38 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.30 Total: 5.93 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -2.17 Total: -12.09 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.50 Total: -38.79 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.56 Total: -16.99 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.15 Total: 17.41 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.85 -7.53 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183873872.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.216 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds