Wall clock time and date at job start Tue Mar 31 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47355 * 2 1 4 4 H 1.09000 * 109.46652 * 305.88269 * 3 2 1 5 5 C 1.50698 * 109.47096 * 185.88457 * 3 2 1 6 6 H 1.07996 * 119.99981 * 244.81990 * 5 3 2 7 7 C 1.37879 * 120.00143 * 64.81776 * 5 3 2 8 8 N 1.31509 * 119.99869 * 5.96897 * 7 5 3 9 9 Si 1.86798 * 120.00004 * 185.96291 * 7 5 3 10 10 H 1.48497 * 109.46832 * 94.99659 * 9 7 5 11 11 H 1.48497 * 109.47082 * 214.99502 * 9 7 5 12 12 H 1.48504 * 109.47162 * 334.99962 * 9 7 5 13 13 N 1.46501 * 109.47214 * 65.88143 * 3 2 1 14 14 C 1.34770 * 119.99934 * 275.00370 * 13 3 2 15 15 O 1.21283 * 120.00684 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00152 * 180.02562 * 14 13 3 17 17 H 1.09008 * 109.46906 * 59.99349 * 16 14 13 18 18 C 1.53006 * 109.47022 * 299.99920 * 16 14 13 19 19 O 1.42893 * 109.47504 * 179.97438 * 16 14 13 20 20 C 1.35905 * 117.00333 * 203.79795 * 19 16 14 21 21 C 1.38726 * 120.05871 * 182.51812 * 20 19 16 22 22 C 1.38143 * 119.94181 * 179.70381 * 21 20 19 23 23 C 1.38260 * 120.05826 * 0.59185 * 22 21 20 24 24 C 1.50701 * 119.94611 * 179.70377 * 23 22 21 25 25 C 1.38264 * 120.11281 * 359.68421 * 23 22 21 26 26 C 1.38147 * 120.05328 * 0.02562 * 25 23 22 27 27 H 1.08999 * 109.47609 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46897 * 300.00257 * 1 2 3 29 29 H 1.08999 * 109.47041 * 60.00209 * 1 2 3 30 30 H 1.08999 * 109.46897 * 239.99743 * 2 1 3 31 31 H 1.09005 * 109.46658 * 119.99925 * 2 1 3 32 32 H 0.97000 * 119.99951 * 179.97438 * 8 7 5 33 33 H 0.96994 * 119.99846 * 94.99862 * 13 3 2 34 34 H 1.08998 * 109.46801 * 300.00042 * 18 16 14 35 35 H 1.09001 * 109.47117 * 59.99346 * 18 16 14 36 36 H 1.08996 * 109.47174 * 179.97438 * 18 16 14 37 37 H 1.07998 * 120.02657 * 359.97438 * 21 20 19 38 38 H 1.08005 * 119.97136 * 180.28093 * 22 21 20 39 39 H 1.08997 * 109.47110 * 269.97848 * 24 23 22 40 40 H 1.08999 * 109.47492 * 29.98079 * 24 23 22 41 41 H 1.09004 * 109.47160 * 149.98451 * 24 23 22 42 42 H 1.07997 * 119.97844 * 179.97438 * 25 23 22 43 43 H 1.07997 * 120.02766 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5933 1.9857 -0.8327 5 6 3.5400 1.4449 -0.1457 6 1 4.1599 1.8145 0.6577 7 6 4.1209 0.9752 -1.3045 8 7 3.3669 0.6351 -2.3269 9 14 5.9788 0.8220 -1.4224 10 1 6.3840 -0.5643 -1.0774 11 1 6.4144 1.1350 -2.8071 12 1 6.6150 1.7736 -0.4763 13 7 1.6707 2.0910 1.2606 14 6 0.4553 2.6573 1.3963 15 8 -0.3327 2.6304 0.4747 16 6 0.0756 3.3250 2.6929 17 1 0.7701 4.1394 2.8992 18 6 0.1361 2.3028 3.8298 19 8 -1.2512 3.8455 2.5900 20 6 -1.5775 4.8717 3.4192 21 6 -2.8640 5.3906 3.4095 22 6 -3.1947 6.4296 4.2578 23 6 -2.2416 6.9604 5.1071 24 6 -2.6033 8.0982 6.0267 25 6 -0.9571 6.4487 5.1146 26 6 -0.6229 5.4058 4.2726 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 3.7755 0.3050 -3.1424 33 1 2.3010 2.1129 1.9976 34 1 -0.5583 1.4884 3.6235 35 1 1.1484 1.9060 3.9082 36 1 -0.1381 2.7858 4.7677 37 1 -3.6075 4.9798 2.7426 38 1 -4.1974 6.8310 4.2539 39 1 -2.4179 9.0463 5.5219 40 1 -3.6579 8.0287 6.2933 41 1 -1.9957 8.0427 6.9299 42 1 -0.2142 6.8652 5.7787 43 1 0.3806 5.0067 4.2785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183873891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:01 Heat of formation + Delta-G solvation = -62.408023 kcal Electronic energy + Delta-G solvation = -23189.829921 eV Core-core repulsion = 19813.967745 eV Total energy + Delta-G solvation = -3375.862176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48677 -39.04623 -37.50722 -35.01385 -32.93344 -32.23280 -31.57400 -31.06462 -30.33595 -26.97413 -26.57111 -24.43973 -23.23737 -22.70117 -21.37811 -20.16934 -19.36119 -18.30444 -17.47132 -16.02425 -15.57697 -15.56309 -15.46001 -15.07926 -14.52817 -14.31350 -14.22794 -13.77721 -13.58745 -13.37341 -13.00501 -12.70872 -12.59461 -12.49652 -12.17143 -11.90719 -11.68147 -11.62622 -11.45639 -11.33450 -11.03844 -10.95045 -10.81056 -10.63532 -10.35223 -10.23549 -9.69399 -9.11699 -9.09801 -8.96327 -8.53150 -8.05881 -7.90350 -6.16899 -4.24260 1.24753 1.34734 2.96860 3.22218 3.26146 3.30274 3.31975 3.66088 4.12647 4.35038 4.68823 4.69742 4.76855 4.93171 5.02343 5.10892 5.16394 5.23442 5.24631 5.39105 5.41976 5.59508 5.61218 5.66693 5.76980 5.95044 6.05718 6.21753 6.30125 6.34670 6.40120 6.49772 6.59787 6.70667 6.98426 7.14841 7.29578 7.37023 7.41634 7.58624 7.68333 7.82033 8.05264 8.58353 8.74880 9.04828 9.42212 10.90852 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027502 B = 0.003229 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.877115 B = 8668.296988 C = 9188.212911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.271 3.729 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.703 5.703 14 C 0.506 3.494 15 O -0.524 6.524 16 C 0.061 3.939 17 H 0.094 0.906 18 C -0.172 4.172 19 O -0.282 6.282 20 C 0.134 3.866 21 C -0.149 4.149 22 C -0.081 4.081 23 C -0.135 4.135 24 C -0.107 4.107 25 C -0.079 4.079 26 C -0.211 4.211 27 H 0.024 0.976 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.122 0.878 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.095 9.253 16.396 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.169 3.831 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.352 5.352 14 C 0.289 3.711 15 O -0.401 6.401 16 C 0.001 3.999 17 H 0.111 0.889 18 C -0.230 4.230 19 O -0.194 6.194 20 C 0.088 3.912 21 C -0.168 4.168 22 C -0.099 4.099 23 C -0.135 4.135 24 C -0.164 4.164 25 C -0.097 4.097 26 C -0.229 4.229 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.140 0.860 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.764 9.043 15.343 19.850 hybrid contribution 1.574 -0.130 0.325 1.612 sum -7.191 8.914 15.668 19.408 Atomic orbital electron populations 1.21853 0.98033 0.98232 1.01553 1.21864 0.92944 0.99739 1.01434 1.18838 0.94606 0.89096 0.80539 0.92655 1.21186 0.90525 1.43764 1.02056 0.92038 1.24891 0.98507 0.95021 0.95145 1.69964 1.35244 1.42809 1.03648 0.86469 0.84917 0.78419 0.77518 1.20544 1.21095 1.19823 1.46405 1.13741 1.56287 1.18815 1.19785 0.83431 0.80055 0.87856 1.90715 1.50176 1.58402 1.40781 1.22393 0.83970 0.97198 0.96311 0.88891 1.22287 1.03987 0.99539 0.97187 1.86249 1.30590 1.46164 1.56401 1.19138 0.93937 0.88058 0.90109 1.20454 0.94576 0.99277 1.02490 1.20818 0.99101 0.95256 0.94684 1.19792 0.94105 0.99610 1.00005 1.20691 1.01718 0.96074 0.97883 1.20795 0.95786 0.95262 0.97879 1.21310 0.99746 1.01234 1.00642 0.95714 0.94013 0.93008 0.89729 0.94744 0.92515 0.77959 0.90789 0.90126 0.91319 0.85065 0.85566 0.91582 0.91834 0.91879 0.85967 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.53 37.16 0.32 -2.78 16 2 C -0.12 -2.86 5.49 -26.73 -0.15 -3.01 16 3 C 0.27 6.67 2.11 -69.08 -0.15 6.52 16 4 H 0.06 1.61 7.56 -51.93 -0.39 1.22 16 5 C -0.54 -13.87 8.67 -34.44 -0.30 -14.17 16 6 H 0.06 1.51 7.73 -52.49 -0.41 1.10 16 7 C 0.07 1.81 5.21 -17.82 -0.09 1.72 16 8 N -0.88 -24.62 11.95 55.43 0.66 -23.96 16 9 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.70 -14.06 4.92 -54.93 -0.27 -14.33 16 14 C 0.51 10.06 5.84 -10.99 -0.06 9.99 16 15 O -0.52 -12.67 13.64 -14.36 -0.20 -12.86 16 16 C 0.06 0.93 2.66 -27.88 -0.07 0.86 16 17 H 0.09 1.22 5.98 -51.92 -0.31 0.91 16 18 C -0.17 -2.10 9.16 37.16 0.34 -1.76 16 19 O -0.28 -4.73 9.34 -39.35 -0.37 -5.10 16 20 C 0.13 1.90 6.56 -39.22 -0.26 1.64 16 21 C -0.15 -1.91 9.99 -39.44 -0.39 -2.30 16 22 C -0.08 -0.85 9.69 -39.61 -0.38 -1.23 16 23 C -0.13 -1.35 5.88 -104.60 -0.62 -1.97 16 24 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 25 C -0.08 -0.83 9.69 -39.61 -0.38 -1.21 16 26 C -0.21 -2.53 8.37 -39.43 -0.33 -2.86 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.91 5.62 -51.93 -0.29 0.61 16 29 H 0.05 1.24 7.90 -51.93 -0.41 0.83 16 30 H 0.08 2.21 6.59 -51.93 -0.34 1.87 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.39 6.54 7.94 -40.82 -0.32 6.22 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 0.85 7.56 -51.93 -0.39 0.46 16 36 H 0.07 0.72 7.37 -51.93 -0.38 0.33 16 37 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 41 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.13 1.38 5.69 -52.49 -0.30 1.08 16 LS Contribution 349.74 15.07 5.27 5.27 Total: -1.00 -31.07 349.74 -8.58 -39.65 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.49 Total: 7.00 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -2.17 Total: -10.96 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.39 Total: -38.29 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.56 Total: -17.97 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.07 -8.58 -39.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183873891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.761 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds