Wall clock time and date at job start Tue Mar 31 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47355 * 2 1 4 4 H 1.09000 * 109.46652 * 305.88269 * 3 2 1 5 5 C 1.50698 * 109.47096 * 185.88457 * 3 2 1 6 6 H 1.07996 * 119.99981 * 244.81990 * 5 3 2 7 7 C 1.37879 * 120.00143 * 64.81776 * 5 3 2 8 8 N 1.31509 * 119.99869 * 5.96897 * 7 5 3 9 9 Si 1.86798 * 120.00004 * 185.96291 * 7 5 3 10 10 H 1.48497 * 109.46832 * 94.99659 * 9 7 5 11 11 H 1.48497 * 109.47082 * 214.99502 * 9 7 5 12 12 H 1.48504 * 109.47162 * 334.99962 * 9 7 5 13 13 N 1.46501 * 109.47214 * 65.88143 * 3 2 1 14 14 C 1.34770 * 119.99934 * 275.00370 * 13 3 2 15 15 O 1.21283 * 120.00684 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00152 * 180.02562 * 14 13 3 17 17 H 1.09008 * 109.46906 * 59.99349 * 16 14 13 18 18 C 1.53006 * 109.47022 * 299.99920 * 16 14 13 19 19 O 1.42893 * 109.47504 * 179.97438 * 16 14 13 20 20 C 1.35905 * 117.00333 * 203.79795 * 19 16 14 21 21 C 1.38726 * 120.05871 * 182.51812 * 20 19 16 22 22 C 1.38143 * 119.94181 * 179.70381 * 21 20 19 23 23 C 1.38260 * 120.05826 * 0.59185 * 22 21 20 24 24 C 1.50701 * 119.94611 * 179.70377 * 23 22 21 25 25 C 1.38264 * 120.11281 * 359.68421 * 23 22 21 26 26 C 1.38147 * 120.05328 * 0.02562 * 25 23 22 27 27 H 1.08999 * 109.47609 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46897 * 300.00257 * 1 2 3 29 29 H 1.08999 * 109.47041 * 60.00209 * 1 2 3 30 30 H 1.08999 * 109.46897 * 239.99743 * 2 1 3 31 31 H 1.09005 * 109.46658 * 119.99925 * 2 1 3 32 32 H 0.97000 * 119.99951 * 179.97438 * 8 7 5 33 33 H 0.96994 * 119.99846 * 94.99862 * 13 3 2 34 34 H 1.08998 * 109.46801 * 300.00042 * 18 16 14 35 35 H 1.09001 * 109.47117 * 59.99346 * 18 16 14 36 36 H 1.08996 * 109.47174 * 179.97438 * 18 16 14 37 37 H 1.07998 * 120.02657 * 359.97438 * 21 20 19 38 38 H 1.08005 * 119.97136 * 180.28093 * 22 21 20 39 39 H 1.08997 * 109.47110 * 269.97848 * 24 23 22 40 40 H 1.08999 * 109.47492 * 29.98079 * 24 23 22 41 41 H 1.09004 * 109.47160 * 149.98451 * 24 23 22 42 42 H 1.07997 * 119.97844 * 179.97438 * 25 23 22 43 43 H 1.07997 * 120.02766 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5933 1.9857 -0.8327 5 6 3.5400 1.4449 -0.1457 6 1 4.1599 1.8145 0.6577 7 6 4.1209 0.9752 -1.3045 8 7 3.3669 0.6351 -2.3269 9 14 5.9788 0.8220 -1.4224 10 1 6.3840 -0.5643 -1.0774 11 1 6.4144 1.1350 -2.8071 12 1 6.6150 1.7736 -0.4763 13 7 1.6707 2.0910 1.2606 14 6 0.4553 2.6573 1.3963 15 8 -0.3327 2.6304 0.4747 16 6 0.0756 3.3250 2.6929 17 1 0.7701 4.1394 2.8992 18 6 0.1361 2.3028 3.8298 19 8 -1.2512 3.8455 2.5900 20 6 -1.5775 4.8717 3.4192 21 6 -2.8640 5.3906 3.4095 22 6 -3.1947 6.4296 4.2578 23 6 -2.2416 6.9604 5.1071 24 6 -2.6033 8.0982 6.0267 25 6 -0.9571 6.4487 5.1146 26 6 -0.6229 5.4058 4.2726 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 3.7755 0.3050 -3.1424 33 1 2.3010 2.1129 1.9976 34 1 -0.5583 1.4884 3.6235 35 1 1.1484 1.9060 3.9082 36 1 -0.1381 2.7858 4.7677 37 1 -3.6075 4.9798 2.7426 38 1 -4.1974 6.8310 4.2539 39 1 -2.4179 9.0463 5.5219 40 1 -3.6579 8.0287 6.2933 41 1 -1.9957 8.0427 6.9299 42 1 -0.2142 6.8652 5.7787 43 1 0.3806 5.0067 4.2785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183873891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:01 Heat of formation + Delta-G solvation = -80.478029 kcal Electronic energy + Delta-G solvation = -23190.613495 eV Core-core repulsion = 19813.967745 eV Total energy + Delta-G solvation = -3376.645750 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.63964 -40.43891 -38.61257 -36.87006 -34.52885 -33.67167 -32.79763 -32.16718 -31.55929 -28.89297 -27.34682 -25.71838 -24.85765 -23.84672 -22.48064 -21.69664 -21.06137 -19.36056 -19.08334 -17.66696 -17.21725 -16.80216 -16.63002 -16.29091 -15.91470 -15.85803 -15.25175 -14.88830 -14.60509 -14.53216 -14.38055 -14.03671 -13.99921 -13.52190 -13.34522 -13.28619 -13.21244 -12.91379 -12.86156 -12.64429 -12.58805 -12.38675 -12.17927 -12.09201 -11.87993 -11.63411 -11.58569 -11.08796 -10.63134 -10.52232 -9.94768 -9.70773 -8.98086 -8.18821 -6.33807 0.39578 0.46404 1.45427 1.45601 1.56390 1.68896 1.77831 2.40865 2.77479 2.83707 3.13164 3.62369 3.79695 3.89065 3.93893 4.01471 4.13241 4.36308 4.45036 4.47637 4.52023 4.54865 4.65767 4.71711 4.75019 4.86097 4.92525 5.03558 5.10615 5.12565 5.19719 5.22828 5.39928 5.40177 5.41845 5.49689 5.59358 5.70428 5.73687 5.84962 5.92631 6.06835 6.43062 6.74796 6.91231 7.32059 7.50689 8.89565 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027502 B = 0.003229 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.877115 B = 8668.296988 C = 9188.212911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.076 0.924 7 C 0.015 3.985 8 N -0.918 5.918 9 Si 0.970 3.030 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.260 1.260 13 N -0.694 5.694 14 C 0.501 3.499 15 O -0.575 6.575 16 C 0.071 3.929 17 H 0.118 0.882 18 C -0.164 4.164 19 O -0.315 6.315 20 C 0.101 3.899 21 C -0.169 4.169 22 C -0.083 4.083 23 C -0.133 4.133 24 C -0.106 4.106 25 C -0.082 4.082 26 C -0.214 4.214 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.021 0.979 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.265 0.735 33 H 0.407 0.593 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.150 0.850 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.150 0.850 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.957 10.415 19.677 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.095 0.905 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.794 3.206 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.184 1.184 13 N -0.345 5.345 14 C 0.286 3.714 15 O -0.455 6.455 16 C 0.012 3.988 17 H 0.135 0.865 18 C -0.222 4.222 19 O -0.229 6.229 20 C 0.056 3.944 21 C -0.188 4.188 22 C -0.101 4.101 23 C -0.133 4.133 24 C -0.163 4.163 25 C -0.100 4.100 26 C -0.232 4.232 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.142 0.858 38 H 0.167 0.833 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.168 0.832 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.615 10.222 18.686 22.619 hybrid contribution 1.120 -0.380 -0.668 1.358 sum -6.495 9.841 18.018 21.533 Atomic orbital electron populations 1.21693 0.97065 0.99306 1.00244 1.21712 0.93690 0.98996 1.00807 1.18419 0.94076 0.89164 0.80906 0.98232 1.21557 0.91139 1.43312 1.02470 0.90546 1.25798 1.03255 0.94673 0.94787 1.70125 1.37329 1.43917 1.04269 0.85367 0.79101 0.78783 0.77300 1.19807 1.21596 1.18404 1.46104 1.14520 1.56009 1.17892 1.20660 0.82457 0.79147 0.89121 1.90692 1.51555 1.60176 1.43075 1.22305 0.84360 0.98266 0.93872 0.86494 1.22280 1.04883 0.98337 0.96677 1.86186 1.31092 1.47563 1.58052 1.19411 0.95122 0.88537 0.91304 1.20646 0.94390 1.00370 1.03388 1.21122 1.00524 0.94400 0.94008 1.20235 0.93793 0.99753 0.99545 1.20757 1.02764 0.94998 0.97737 1.21177 0.96659 0.94547 0.97643 1.21497 0.99818 1.01589 1.00316 0.93271 0.93698 0.95935 0.92529 0.92920 0.92647 0.75757 0.92225 0.88120 0.89027 0.85835 0.83266 0.90756 0.90707 0.90529 0.83236 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 8.53 71.98 0.61 -5.13 16 2 C -0.11 -5.47 5.49 30.59 0.17 -5.30 16 3 C 0.28 14.07 2.11 44.24 0.09 14.16 16 4 H 0.00 -0.02 7.56 -2.39 -0.02 -0.03 16 5 C -0.55 -28.28 8.67 25.60 0.22 -28.05 16 6 H 0.08 3.64 7.73 -2.91 -0.02 3.61 16 7 C 0.02 0.81 5.21 84.66 0.44 1.25 16 8 N -0.92 -53.02 11.95 21.45 0.26 -52.76 16 9 Si 0.97 41.49 29.54 68.60 2.03 43.52 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 13 N -0.69 -27.81 4.92 -446.10 -2.20 -30.00 16 14 C 0.50 20.26 5.84 87.66 0.51 20.77 16 15 O -0.58 -29.24 13.64 16.00 0.22 -29.02 16 16 C 0.07 2.12 2.66 29.85 0.08 2.20 16 17 H 0.12 2.86 5.98 -2.38 -0.01 2.85 16 18 C -0.16 -3.68 9.16 71.98 0.66 -3.02 16 19 O -0.32 -10.78 9.34 -73.44 -0.69 -11.47 16 20 C 0.10 2.84 6.56 22.51 0.15 2.99 16 21 C -0.17 -4.34 9.99 22.36 0.22 -4.12 16 22 C -0.08 -1.61 9.69 22.25 0.22 -1.40 16 23 C -0.13 -2.30 5.88 -19.85 -0.12 -2.42 16 24 C -0.11 -1.13 10.01 71.24 0.71 -0.42 16 25 C -0.08 -1.48 9.69 22.25 0.22 -1.26 16 26 C -0.21 -4.72 8.37 22.37 0.19 -4.53 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.04 1.99 5.62 -2.39 -0.01 1.98 16 29 H 0.02 1.11 7.90 -2.39 -0.02 1.09 16 30 H 0.06 3.06 6.59 -2.39 -0.02 3.05 16 31 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.41 13.09 7.94 -92.71 -0.74 12.35 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.10 1.82 7.56 -2.39 -0.02 1.80 16 36 H 0.09 1.66 7.37 -2.39 -0.02 1.64 16 37 H 0.12 3.19 8.06 -2.91 -0.02 3.16 16 38 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 41 H 0.08 0.64 8.08 -2.38 -0.02 0.62 16 42 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 43 H 0.14 2.64 5.69 -2.91 -0.02 2.62 16 Total: -1.00 -71.09 349.74 4.27 -66.82 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.27 Total: 27.18 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 4.38 Total: -14.26 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -1.94 Total: -82.77 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -0.47 Total: -40.49 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -71.09 4.27 -66.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183873891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.658 kcal (2) G-P(sol) polarization free energy of solvation -71.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds