Wall clock time and date at job start Tue Mar 31 2020 06:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47227 * 2 1 4 4 H 1.09001 * 109.47440 * 305.69668 * 3 2 1 5 5 C 1.50700 * 109.47105 * 185.69425 * 3 2 1 6 6 H 1.08005 * 119.99741 * 275.00495 * 5 3 2 7 7 C 1.37874 * 120.00127 * 95.00567 * 5 3 2 8 8 N 1.31519 * 119.99782 * 184.82689 * 7 5 3 9 9 Si 1.86791 * 119.99991 * 4.83162 * 7 5 3 10 10 H 1.48501 * 109.47552 * 84.86069 * 9 7 5 11 11 H 1.48502 * 109.47372 * 204.86165 * 9 7 5 12 12 H 1.48504 * 109.47016 * 324.86042 * 9 7 5 13 13 N 1.46503 * 109.47099 * 65.69689 * 3 2 1 14 14 C 1.34781 * 119.99720 * 274.99624 * 13 3 2 15 15 O 1.21273 * 119.99804 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99663 * 179.97438 * 14 13 3 17 17 C 1.52998 * 109.46760 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47268 * 60.00019 * 17 16 14 19 19 O 1.42901 * 109.47181 * 300.00203 * 17 16 14 20 20 C 1.50702 * 109.47051 * 180.02562 * 17 16 14 21 21 C 1.38238 * 119.99973 * 329.72655 * 20 17 16 22 22 C 1.38233 * 119.99820 * 179.78910 * 21 20 17 23 23 C 1.38237 * 120.00013 * 0.44220 * 22 21 20 24 24 C 1.38232 * 119.99957 * 359.81274 * 23 22 21 25 25 C 1.38230 * 120.00185 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46878 * 59.99263 * 1 2 3 27 27 H 1.09004 * 109.46880 * 299.99827 * 1 2 3 28 28 H 1.09000 * 109.47168 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46878 * 120.00737 * 2 1 3 30 30 H 1.09004 * 109.46880 * 240.00173 * 2 1 3 31 31 H 0.97003 * 119.99388 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00154 * 94.99717 * 13 3 2 33 33 H 1.09002 * 109.47208 * 300.00005 * 16 14 13 34 34 H 1.08999 * 109.47155 * 60.00335 * 16 14 13 35 35 H 1.09002 * 109.47196 * 59.99909 * 18 17 16 36 36 H 1.08997 * 109.47042 * 179.97438 * 18 17 16 37 37 H 1.08998 * 109.47146 * 299.99871 * 18 17 16 38 38 H 0.96700 * 113.99764 * 299.99713 * 19 17 16 39 39 H 1.08001 * 119.99557 * 359.97438 * 21 20 17 40 40 H 1.07999 * 119.99577 * 180.27062 * 22 21 20 41 41 H 1.07995 * 119.99534 * 179.83434 * 23 22 21 42 42 H 1.07995 * 119.99716 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00354 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5404 1.4447 -0.1410 6 1 4.1651 1.3332 0.7330 7 6 4.1157 1.5892 -1.3856 8 7 5.4205 1.4963 -1.5217 9 14 3.0419 1.9171 -2.8784 10 1 2.7755 3.3740 -2.9863 11 1 3.7402 1.4497 -4.1028 12 1 1.7562 1.1883 -2.7331 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6588 1.3902 15 8 -0.3343 2.6301 0.4664 16 6 0.0669 3.3269 2.6853 17 6 -1.3537 3.8833 2.5704 18 6 -2.3272 2.7397 2.2780 19 8 -1.4070 4.8375 1.5080 20 6 -1.7376 4.5519 3.8652 21 6 -1.2099 4.0989 5.0600 22 6 -1.5587 4.7150 6.2473 23 6 -2.4422 5.7782 6.2408 24 6 -2.9739 6.2277 5.0466 25 6 -2.6217 5.6145 3.8589 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5140 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 5.8252 1.5977 -2.3975 32 1 2.2949 2.1149 1.9978 33 1 0.1071 2.5988 3.4956 34 1 0.7607 4.1413 2.8938 35 1 -2.2866 2.0118 3.0883 36 1 -3.3393 3.1361 2.1966 37 1 -2.0494 2.2566 1.3413 38 1 -0.8138 5.5919 1.6269 39 1 -0.5229 3.2656 5.0654 40 1 -1.1430 4.3639 7.1802 41 1 -2.7167 6.2577 7.1687 42 1 -3.6638 7.0585 5.0416 43 1 -3.0368 5.9659 2.9259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183876589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:09 Heat of formation + Delta-G solvation = -70.314668 kcal Electronic energy + Delta-G solvation = -23823.172188 eV Core-core repulsion = 20446.967154 eV Total energy + Delta-G solvation = -3376.205033 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.28992 -38.93509 -36.94295 -35.01122 -32.80744 -32.32547 -31.52172 -31.01577 -29.75145 -28.14587 -26.98481 -23.54453 -22.82073 -22.56224 -20.84682 -19.86883 -19.46871 -18.00673 -17.00141 -16.46650 -15.81011 -15.63636 -15.19325 -15.03577 -14.66875 -14.31085 -14.03204 -13.81727 -13.53298 -13.08898 -12.85590 -12.68504 -12.52337 -12.19646 -12.02292 -11.90219 -11.78646 -11.56526 -11.42700 -11.12387 -10.93414 -10.74272 -10.65135 -10.61872 -10.00338 -9.95830 -9.83101 -9.19168 -9.08291 -8.90357 -8.84068 -8.68248 -7.92678 -6.23141 -4.26558 1.16329 1.24199 3.27183 3.35321 3.36744 3.43460 3.61075 3.92773 4.33496 4.34787 4.63297 4.72371 4.83874 4.92034 4.97536 5.13447 5.15327 5.31511 5.40822 5.56037 5.66805 5.77903 5.79426 5.87189 5.98072 6.06528 6.10075 6.10953 6.26516 6.30436 6.34612 6.44433 6.58510 6.69426 6.80615 6.83565 7.01997 7.02567 7.30683 7.40178 7.62768 7.79749 8.16812 8.62078 8.78213 9.08771 9.39809 10.88614 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026628 B = 0.003813 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.285769 B = 7341.232652 C = 7432.563241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.238 3.762 4 H 0.051 0.949 5 C -0.531 4.531 6 H 0.077 0.923 7 C 0.081 3.919 8 N -0.890 5.890 9 Si 0.874 3.126 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.259 1.259 13 N -0.707 5.707 14 C 0.501 3.499 15 O -0.531 6.531 16 C -0.173 4.173 17 C 0.195 3.805 18 C -0.146 4.146 19 O -0.534 6.534 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.103 4.103 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.029 0.971 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.267 0.733 32 H 0.390 0.610 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.102 0.898 38 H 0.369 0.631 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.031 6.390 14.428 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.135 3.865 4 H 0.069 0.931 5 C -0.569 4.569 6 H 0.095 0.905 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.701 3.299 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.183 1.183 13 N -0.356 5.356 14 C 0.286 3.714 15 O -0.409 6.409 16 C -0.213 4.213 17 C 0.154 3.846 18 C -0.203 4.203 19 O -0.338 6.338 20 C -0.112 4.112 21 C -0.132 4.132 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.121 4.121 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.223 0.777 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.215 0.785 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.859 5.929 13.364 20.845 hybrid contribution 0.452 0.630 0.002 0.775 sum -14.407 6.559 13.366 20.718 Atomic orbital electron populations 1.21916 0.97425 0.98761 1.02087 1.22068 0.93675 0.99572 1.01074 1.19123 0.95326 0.89007 0.83012 0.93140 1.21031 0.88836 1.51629 0.95380 0.90483 1.24944 0.94870 0.93696 0.98839 1.69891 1.09791 1.48487 1.24472 0.86891 0.81248 0.79646 0.82138 1.19890 1.21298 1.18327 1.46614 1.14621 1.56288 1.18091 1.20194 0.82800 0.79381 0.89026 1.90631 1.50135 1.59101 1.41024 1.22534 0.98271 1.02189 0.98327 1.19604 0.93204 0.88912 0.82929 1.21997 0.97868 0.95972 1.04471 1.86701 1.66459 1.35489 1.45114 1.20709 0.97835 0.96868 0.95753 1.21163 0.99906 1.00106 0.91992 1.21148 0.98268 0.96557 0.98009 1.21163 0.97760 0.97298 0.98000 1.21161 1.00218 1.00086 0.92618 1.21053 0.96975 0.95572 0.98512 0.93053 0.93081 0.95229 0.93159 0.92244 0.92280 0.77673 0.88634 0.89080 0.92221 0.92606 0.87995 0.78495 0.85683 0.86083 0.86314 0.86175 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.53 37.16 0.32 -2.51 16 2 C -0.12 -2.67 5.59 -26.73 -0.15 -2.82 16 3 C 0.24 5.52 1.89 -69.08 -0.13 5.38 16 4 H 0.05 1.30 4.73 -51.93 -0.25 1.05 16 5 C -0.53 -14.11 9.05 -34.44 -0.31 -14.42 16 6 H 0.08 2.16 8.06 -52.48 -0.42 1.74 16 7 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 8 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 9 Si 0.87 21.65 26.99 -169.99 -4.59 17.07 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.26 -6.32 6.82 56.52 0.39 -5.94 16 13 N -0.71 -13.59 5.03 -54.93 -0.28 -13.87 16 14 C 0.50 8.93 5.99 -10.98 -0.07 8.86 16 15 O -0.53 -11.10 10.10 -12.69 -0.13 -11.23 16 16 C -0.17 -2.24 4.26 -27.88 -0.12 -2.36 16 17 C 0.20 2.54 0.81 -91.77 -0.07 2.47 16 18 C -0.15 -2.04 8.51 37.16 0.32 -1.72 16 19 O -0.53 -7.74 10.86 -53.48 -0.58 -8.32 16 20 C -0.11 -1.26 4.80 -104.62 -0.50 -1.76 16 21 C -0.11 -1.15 9.14 -39.58 -0.36 -1.52 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 24 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 25 C -0.10 -1.11 9.35 -39.58 -0.37 -1.48 16 26 H 0.05 1.08 7.89 -51.93 -0.41 0.67 16 27 H 0.05 0.97 5.63 -51.93 -0.29 0.68 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.39 6.66 8.59 -40.82 -0.35 6.31 16 33 H 0.10 1.04 6.51 -51.93 -0.34 0.70 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 1.72 5.51 -51.93 -0.29 1.44 16 38 H 0.37 4.23 9.04 45.56 0.41 4.64 16 39 H 0.13 1.11 6.17 -52.49 -0.32 0.79 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.13 1.36 7.48 -52.49 -0.39 0.97 16 LS Contribution 342.44 15.07 5.16 5.16 Total: -1.00 -31.66 342.44 -7.99 -39.65 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.61 Total: 11.21 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -2.74 Total: -14.28 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.50 Total: -39.26 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.71 Total: -19.55 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.59 Total: 17.07 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.66 -7.99 -39.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183876589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.665 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds